Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48508 * 109.46753 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47263 * 120.00249 * 3 2 1 7 7 C 1.37876 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00334 * 189.64524 * 7 2 1 9 9 C 1.50702 * 119.99651 * 9.64368 * 7 2 1 10 10 H 1.09004 * 109.46724 * 185.36801 * 9 7 2 11 11 N 1.46505 * 109.47014 * 305.36277 * 9 7 2 12 12 C 1.34783 * 120.00036 * 275.00204 * 11 9 7 13 13 O 1.21277 * 119.99504 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99688 * 179.97438 * 12 11 9 15 15 C 1.52997 * 117.50206 * 248.61860 * 14 12 11 16 16 C 1.53002 * 60.00350 * 252.51669 * 15 14 12 17 17 C 1.50698 * 109.47575 * 65.36247 * 9 7 2 18 18 C 1.38651 * 120.78866 * 273.53140 * 17 9 7 19 19 C 1.38202 * 119.15827 * 179.97438 * 18 17 9 20 20 N 1.31870 * 120.76981 * 359.97438 * 19 18 17 21 21 C 1.31876 * 121.72397 * 0.02562 * 20 19 18 22 22 C 1.38205 * 120.76231 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99704 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00009 * 94.99905 * 11 9 7 25 25 H 1.08996 * 115.55287 * 34.33381 * 14 12 11 26 26 H 1.09007 * 117.49783 * 0.02562 * 15 14 12 27 27 H 1.08995 * 117.49711 * 145.02201 * 15 14 12 28 28 H 1.08998 * 117.49340 * 252.51097 * 16 15 14 29 29 H 1.08997 * 117.51826 * 107.48037 * 16 15 14 30 30 H 1.07999 * 120.42026 * 0.25350 * 18 17 9 31 31 H 1.08001 * 119.61974 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.61961 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.42115 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0730 -1.2007 0.1562 9 6 1.2670 -2.4898 -0.2198 10 1 1.9551 -3.3255 -0.0923 11 7 0.1772 -2.6019 0.7529 12 6 0.4197 -3.0977 1.9826 13 8 1.5402 -3.4505 2.2839 14 6 -0.7012 -3.2125 2.9832 15 6 -0.6566 -2.2901 4.2031 16 6 -0.3619 -3.7831 4.3618 17 6 0.6992 -2.5148 -1.6154 18 6 -0.5411 -1.9576 -1.8871 19 6 -1.0293 -1.9988 -3.1794 20 7 -0.3301 -2.5588 -4.1472 21 6 0.8527 -3.0983 -3.9254 22 6 1.4046 -3.0955 -2.6583 23 1 -0.4850 0.8401 0.0004 24 1 -0.7189 -2.3194 0.5120 25 1 -1.6803 -3.4502 2.5673 26 1 0.1835 -1.5999 4.2817 27 1 -1.6063 -1.9207 4.5897 28 1 -1.1179 -4.3958 4.8528 29 1 0.6720 -4.0756 4.5447 30 1 -1.1163 -1.4933 -1.0998 31 1 -1.9947 -1.5675 -3.3993 32 1 1.3959 -3.5483 -4.7432 33 1 2.3734 -3.5393 -2.4829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259686983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = 5.896022 kcal Electronic energy + Delta-G solvation = -17701.821547 eV Core-core repulsion = 14920.564255 eV Total energy + Delta-G solvation = -2781.257292 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07597 -40.27957 -37.37228 -36.32653 -33.87359 -32.89262 -31.79367 -29.32003 -26.01800 -24.61966 -24.02195 -23.23586 -22.26459 -20.72536 -18.65308 -18.49663 -17.50039 -16.83657 -16.58069 -16.26030 -15.89651 -15.74994 -15.25891 -14.65978 -14.54255 -14.29858 -14.11004 -13.55726 -13.33540 -12.95925 -12.81519 -12.38566 -12.33873 -12.00407 -11.77064 -11.42834 -11.30470 -10.91317 -10.50204 -10.28652 -10.14966 -9.78703 -9.44745 -8.22585 -6.36295 0.47111 0.64584 1.35420 1.37384 1.43446 1.88113 2.34569 2.62315 3.06200 3.14403 3.18880 3.77671 3.93686 4.05765 4.11889 4.18728 4.25898 4.40735 4.51546 4.62231 4.76769 4.83488 4.95374 4.99841 5.11568 5.21352 5.29592 5.37788 5.65552 5.81896 6.00488 6.05602 6.10176 6.60840 7.10052 7.22384 7.33964 7.75394 8.75696 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.009585 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.993954 B = 2920.574959 C = 3857.900884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.052 3.948 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.549 4.549 8 H 0.041 0.959 9 C 0.297 3.703 10 H 0.031 0.969 11 N -0.674 5.674 12 C 0.522 3.478 13 O -0.613 6.613 14 C -0.199 4.199 15 C -0.146 4.146 16 C -0.142 4.142 17 C -0.024 4.024 18 C -0.150 4.150 19 C 0.074 3.926 20 N -0.518 5.518 21 C 0.082 3.918 22 C -0.188 4.188 23 H 0.271 0.729 24 H 0.400 0.600 25 H 0.144 0.856 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.177 0.823 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -3.399 1.098 7.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.153 4.153 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.587 4.587 8 H 0.059 0.941 9 C 0.194 3.806 10 H 0.049 0.951 11 N -0.321 5.321 12 C 0.309 3.691 13 O -0.497 6.497 14 C -0.220 4.220 15 C -0.183 4.183 16 C -0.179 4.179 17 C -0.033 4.033 18 C -0.170 4.170 19 C -0.081 4.081 20 N -0.228 5.228 21 C -0.074 4.074 22 C -0.209 4.209 23 H 0.080 0.920 24 H 0.237 0.763 25 H 0.161 0.839 26 H 0.089 0.911 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.134 -3.516 0.416 7.082 hybrid contribution 0.952 1.306 0.701 1.762 sum -5.181 -2.210 1.116 5.742 Atomic orbital electron populations 1.69708 1.05968 1.27862 1.46904 1.25336 0.95815 1.00915 0.93213 0.85861 0.78991 0.80102 0.78130 1.20410 1.19678 1.20986 1.21352 0.93981 0.91983 1.51416 0.94086 1.17343 0.85592 0.95068 0.82560 0.95131 1.46226 1.13142 1.60199 1.12574 1.20201 0.88955 0.76746 0.83193 1.90546 1.26113 1.53890 1.79179 1.22261 0.99298 1.10311 0.90099 1.22900 1.04012 0.93422 0.98016 1.22965 1.03256 0.96317 0.95338 1.20811 0.93453 0.92110 0.96891 1.22440 0.96920 0.98482 0.99153 1.23009 0.99906 0.96362 0.88855 1.67613 1.08162 1.10958 1.36073 1.22918 0.92027 0.96600 0.95858 1.22077 1.01715 1.02788 0.94283 0.91955 0.76296 0.83877 0.91149 0.84958 0.84707 0.90094 0.83059 0.81373 0.80579 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.52 8.94 21.45 0.19 -41.32 16 2 C 0.05 2.64 5.19 84.65 0.44 3.08 16 3 Si 0.94 41.97 29.55 68.60 2.03 43.99 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.55 -29.61 8.82 25.60 0.23 -29.38 16 8 H 0.04 2.34 7.83 -2.92 -0.02 2.32 16 9 C 0.30 14.55 2.47 43.50 0.11 14.66 16 10 H 0.03 1.61 7.52 -2.38 -0.02 1.59 16 11 N -0.67 -30.13 4.07 -449.67 -1.83 -31.96 16 12 C 0.52 23.29 7.57 87.66 0.66 23.95 16 13 O -0.61 -32.44 15.92 -3.02 -0.05 -32.48 16 14 C -0.20 -6.47 6.19 -11.54 -0.07 -6.54 16 15 C -0.15 -4.21 10.23 30.59 0.31 -3.90 16 16 C -0.14 -3.92 10.04 30.60 0.31 -3.61 16 17 C -0.02 -1.02 4.85 -19.67 -0.10 -1.12 16 18 C -0.15 -6.02 8.01 22.36 0.18 -5.84 16 19 C 0.07 2.69 11.18 84.68 0.95 3.64 16 20 N -0.52 -19.01 10.36 -195.84 -2.03 -21.04 16 21 C 0.08 2.85 11.18 84.68 0.95 3.79 16 22 C -0.19 -7.29 9.81 22.36 0.22 -7.07 16 23 H 0.27 12.38 8.31 -92.70 -0.77 11.61 16 24 H 0.40 16.54 6.11 -92.71 -0.57 15.98 16 25 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.08 2.64 7.67 -2.39 -0.02 2.62 16 30 H 0.15 6.19 4.88 -2.91 -0.01 6.18 16 31 H 0.17 4.97 8.06 -2.91 -0.02 4.94 16 32 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -62.88 284.78 3.06 -59.83 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.56 Total: 31.33 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.18 Total: -8.35 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.67 Total: -94.32 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.48 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -62.88 3.06 -59.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.724 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds