Wall clock time and date at job start Mon Mar 30 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47362 * 270.00509 * 3 2 1 5 5 H 1.48509 * 109.46894 * 30.00304 * 3 2 1 6 6 H 1.48500 * 109.47521 * 150.00142 * 3 2 1 7 7 C 1.37874 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00809 * 170.36458 * 7 2 1 9 9 C 1.50701 * 119.99759 * 350.36642 * 7 2 1 10 10 H 1.09001 * 109.47608 * 174.55356 * 9 7 2 11 11 N 1.46501 * 109.47493 * 54.55490 * 9 7 2 12 12 C 1.34774 * 120.00138 * 84.99167 * 11 9 7 13 13 O 1.21280 * 120.00280 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00072 * 180.02562 * 12 11 9 15 15 C 1.52994 * 117.49928 * 248.63070 * 14 12 11 16 16 C 1.52997 * 117.49833 * 180.02562 * 14 12 11 17 17 C 1.50700 * 109.47372 * 294.55337 * 9 7 2 18 18 C 1.38648 * 120.78759 * 269.36237 * 17 9 7 19 19 C 1.38207 * 119.16105 * 179.74246 * 18 17 9 20 20 N 1.31872 * 120.76104 * 0.25216 * 19 18 17 21 21 C 1.31868 * 121.73093 * 359.97438 * 20 19 18 22 22 C 1.38207 * 120.75942 * 359.97438 * 21 20 19 23 23 H 0.96999 * 120.00121 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99831 * 265.00609 * 11 9 7 25 25 H 1.09001 * 115.54591 * 34.34113 * 14 12 11 26 26 H 1.08997 * 117.50302 * 359.97438 * 15 14 12 27 27 H 1.09001 * 117.50235 * 145.02458 * 15 14 12 28 28 H 1.08998 * 117.50440 * 214.98161 * 16 14 12 29 29 H 1.09001 * 117.50040 * 0.02562 * 16 14 12 30 30 H 1.07998 * 120.42630 * 0.02562 * 18 17 9 31 31 H 1.07999 * 119.61977 * 180.27246 * 19 18 17 32 32 H 1.07994 * 119.61918 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.41606 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0732 -1.2006 -0.1571 9 6 1.2671 -2.4900 0.2173 10 1 1.9548 -3.3257 0.0878 11 7 0.1762 -2.6004 -0.7543 12 6 0.4172 -3.0940 -1.9850 13 8 1.5372 -3.4472 -2.2881 14 6 -0.7048 -3.2071 -2.9847 15 6 -1.1706 -4.6132 -3.3678 16 6 -0.3672 -3.7758 -4.3643 17 6 0.7008 -2.5172 1.6136 18 6 1.4323 -3.0463 2.6659 19 6 0.8824 -3.0494 3.9339 20 7 -0.3241 -2.5616 4.1470 21 6 -1.0499 -2.0548 3.1696 22 6 -0.5654 -2.0170 1.8758 23 1 -0.4850 0.8400 0.0004 24 1 -0.7196 -2.3181 -0.5119 25 1 -1.4599 -2.4226 -2.9345 26 1 -0.6653 -5.4565 -2.8972 27 1 -2.2325 -4.7541 -3.5697 28 1 -0.9002 -3.3656 -5.2220 29 1 0.6664 -4.0686 -4.5488 30 1 2.4211 -3.4467 2.4978 31 1 1.4475 -3.4556 4.7597 32 1 -2.0343 -1.6650 3.3826 33 1 -1.1645 -1.6002 1.0796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259686986.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:17 Heat of formation + Delta-G solvation = 22.878281 kcal Electronic energy + Delta-G solvation = -17666.850899 eV Core-core repulsion = 14886.330012 eV Total energy + Delta-G solvation = -2780.520886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48065 -38.69843 -35.91052 -34.63293 -31.98099 -31.25971 -30.27602 -27.51669 -24.30409 -23.05696 -22.51667 -22.10862 -20.61918 -19.07003 -17.00441 -16.73195 -15.89124 -15.30560 -14.81259 -14.72476 -14.43089 -14.15119 -13.51071 -13.24289 -12.86237 -12.78709 -12.34576 -11.86412 -11.76065 -11.26876 -11.11518 -10.98493 -10.71395 -10.25380 -10.18486 -10.02906 -9.89055 -9.06114 -8.73889 -8.69901 -8.50002 -8.25148 -7.63207 -6.32155 -4.39355 1.99151 2.23398 3.17412 3.24403 3.28978 3.44263 4.22723 4.26305 4.39182 4.70323 5.00669 5.16719 5.17950 5.29616 5.39811 5.63847 5.80051 5.85953 5.92208 6.02133 6.13358 6.19036 6.30677 6.44764 6.48021 6.56835 6.83861 6.98157 7.40744 7.58913 7.63654 7.84493 7.92333 8.58057 8.73613 8.85278 9.29264 9.45929 10.69307 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.009757 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.141288 B = 2869.183266 C = 3930.772027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.294 3.706 10 H 0.057 0.943 11 N -0.678 5.678 12 C 0.536 3.464 13 O -0.567 6.567 14 C -0.183 4.183 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.002 4.002 18 C -0.177 4.177 19 C 0.077 3.923 20 N -0.511 5.511 21 C 0.074 3.926 22 C -0.141 4.141 23 H 0.266 0.734 24 H 0.394 0.606 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -4.632 -1.057 6.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.127 4.127 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.192 3.808 10 H 0.075 0.925 11 N -0.326 5.326 12 C 0.320 3.680 13 O -0.448 6.448 14 C -0.204 4.204 15 C -0.199 4.199 16 C -0.191 4.191 17 C -0.011 4.011 18 C -0.198 4.198 19 C -0.080 4.080 20 N -0.221 5.221 21 C -0.082 4.082 22 C -0.161 4.161 23 H 0.076 0.924 24 H 0.229 0.771 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.299 -4.751 -0.379 6.418 hybrid contribution 0.315 1.523 -0.682 1.698 sum -3.983 -3.228 -1.061 5.236 Atomic orbital electron populations 1.69730 1.06129 1.27292 1.48008 1.24948 0.94921 0.99477 0.93391 0.86479 0.80138 0.82527 0.78330 1.20436 1.20962 1.19634 1.21343 0.94813 0.90079 1.49101 0.91462 1.17576 0.85294 0.97111 0.80849 0.92499 1.46333 1.13304 1.60614 1.12373 1.19261 0.88094 0.77945 0.82656 1.90580 1.23756 1.52096 1.78386 1.22300 1.01568 0.98582 0.97940 1.22843 1.00123 0.93352 1.03587 1.22836 1.01887 1.02771 0.91629 1.20859 0.92364 0.90255 0.97670 1.21832 1.01105 1.02959 0.93869 1.22382 0.92218 0.97808 0.95580 1.67492 1.07121 1.11471 1.36000 1.22573 0.98953 0.97169 0.89515 1.22291 0.97142 0.98431 0.98242 0.92429 0.77053 0.86530 0.88676 0.88581 0.88754 0.87731 0.85906 0.84193 0.84272 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.30 9.19 55.43 0.51 -20.79 16 2 C 0.08 1.96 5.21 -17.82 -0.09 1.87 16 3 Si 0.90 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.44 8.82 -34.44 -0.30 -13.74 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 9 C 0.29 6.94 2.46 -70.23 -0.17 6.76 16 10 H 0.06 1.40 7.53 -51.93 -0.39 1.01 16 11 N -0.68 -14.88 4.06 -56.07 -0.23 -15.11 16 12 C 0.54 11.71 7.57 -10.99 -0.08 11.63 16 13 O -0.57 -14.34 15.92 5.56 0.09 -14.26 16 14 C -0.18 -3.10 6.19 -91.77 -0.57 -3.67 16 15 C -0.16 -2.23 10.23 -26.75 -0.27 -2.50 16 16 C -0.15 -2.28 10.04 -26.75 -0.27 -2.55 16 17 C 0.00 -0.05 4.84 -104.32 -0.50 -0.55 16 18 C -0.18 -3.47 9.82 -39.44 -0.39 -3.85 16 19 C 0.08 1.41 11.18 -17.55 -0.20 1.21 16 20 N -0.51 -9.97 10.36 -13.25 -0.14 -10.11 16 21 C 0.07 1.41 11.18 -17.55 -0.20 1.21 16 22 C -0.14 -2.88 8.04 -39.44 -0.32 -3.20 16 23 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 24 H 0.39 8.13 5.95 -40.82 -0.24 7.89 16 25 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.71 7.67 -51.93 -0.40 1.32 16 30 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.15 3.09 5.04 -52.48 -0.26 2.82 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -28.75 285.04 -7.66 -36.41 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -3.80 Total: 11.46 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.36 Total: -7.39 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.14 Total: -46.00 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.75 -7.66 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686986.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.289 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds