Wall clock time and date at job start Mon Mar 30 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47362 * 270.00509 * 3 2 1 5 5 H 1.48509 * 109.46894 * 30.00304 * 3 2 1 6 6 H 1.48500 * 109.47521 * 150.00142 * 3 2 1 7 7 C 1.37874 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00809 * 170.36458 * 7 2 1 9 9 C 1.50701 * 119.99759 * 350.36642 * 7 2 1 10 10 H 1.09001 * 109.47608 * 174.55356 * 9 7 2 11 11 N 1.46501 * 109.47493 * 54.55490 * 9 7 2 12 12 C 1.34774 * 120.00138 * 84.99167 * 11 9 7 13 13 O 1.21280 * 120.00280 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00072 * 180.02562 * 12 11 9 15 15 C 1.52994 * 117.49928 * 248.63070 * 14 12 11 16 16 C 1.52997 * 117.49833 * 180.02562 * 14 12 11 17 17 C 1.50700 * 109.47372 * 294.55337 * 9 7 2 18 18 C 1.38648 * 120.78759 * 269.36237 * 17 9 7 19 19 C 1.38207 * 119.16105 * 179.74246 * 18 17 9 20 20 N 1.31872 * 120.76104 * 0.25216 * 19 18 17 21 21 C 1.31868 * 121.73093 * 359.97438 * 20 19 18 22 22 C 1.38207 * 120.75942 * 359.97438 * 21 20 19 23 23 H 0.96999 * 120.00121 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99831 * 265.00609 * 11 9 7 25 25 H 1.09001 * 115.54591 * 34.34113 * 14 12 11 26 26 H 1.08997 * 117.50302 * 359.97438 * 15 14 12 27 27 H 1.09001 * 117.50235 * 145.02458 * 15 14 12 28 28 H 1.08998 * 117.50440 * 214.98161 * 16 14 12 29 29 H 1.09001 * 117.50040 * 0.02562 * 16 14 12 30 30 H 1.07998 * 120.42630 * 0.02562 * 18 17 9 31 31 H 1.07999 * 119.61977 * 180.27246 * 19 18 17 32 32 H 1.07994 * 119.61918 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.41606 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0732 -1.2006 -0.1571 9 6 1.2671 -2.4900 0.2173 10 1 1.9548 -3.3257 0.0878 11 7 0.1762 -2.6004 -0.7543 12 6 0.4172 -3.0940 -1.9850 13 8 1.5372 -3.4472 -2.2881 14 6 -0.7048 -3.2071 -2.9847 15 6 -1.1706 -4.6132 -3.3678 16 6 -0.3672 -3.7758 -4.3643 17 6 0.7008 -2.5172 1.6136 18 6 1.4323 -3.0463 2.6659 19 6 0.8824 -3.0494 3.9339 20 7 -0.3241 -2.5616 4.1470 21 6 -1.0499 -2.0548 3.1696 22 6 -0.5654 -2.0170 1.8758 23 1 -0.4850 0.8400 0.0004 24 1 -0.7196 -2.3181 -0.5119 25 1 -1.4599 -2.4226 -2.9345 26 1 -0.6653 -5.4565 -2.8972 27 1 -2.2325 -4.7541 -3.5697 28 1 -0.9002 -3.3656 -5.2220 29 1 0.6664 -4.0686 -4.5488 30 1 2.4211 -3.4467 2.4978 31 1 1.4475 -3.4556 4.7597 32 1 -2.0343 -1.6650 3.3826 33 1 -1.1645 -1.6002 1.0796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259686986.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:16 Heat of formation + Delta-G solvation = 5.587693 kcal Electronic energy + Delta-G solvation = -17667.600675 eV Core-core repulsion = 14886.330012 eV Total energy + Delta-G solvation = -2781.270662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08444 -40.28554 -37.38203 -36.32450 -33.87704 -32.89669 -31.80519 -29.31485 -26.02999 -24.61976 -24.02375 -23.24243 -22.26090 -20.73096 -18.67629 -18.48304 -17.46534 -16.89666 -16.57986 -16.26516 -15.84799 -15.81068 -15.16578 -14.87235 -14.43549 -14.29867 -14.08187 -13.57172 -13.33587 -12.94506 -12.81634 -12.37946 -12.35374 -11.99406 -11.77810 -11.44724 -11.33305 -10.90478 -10.50200 -10.28169 -10.15271 -9.79799 -9.45670 -8.23167 -6.36726 0.46829 0.64325 1.33844 1.37530 1.45206 1.87014 2.34648 2.66642 3.04396 3.10236 3.17590 3.77300 3.92212 4.04228 4.11254 4.18243 4.28213 4.44602 4.51830 4.60309 4.75830 4.82420 4.94993 4.99468 5.11980 5.18644 5.28970 5.37335 5.64816 5.79385 5.99446 6.05028 6.09893 6.60745 7.09740 7.22036 7.33734 7.75081 8.75699 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.009757 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.141288 B = 2869.183266 C = 3930.772027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.051 3.949 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.042 0.958 9 C 0.297 3.703 10 H 0.031 0.969 11 N -0.674 5.674 12 C 0.523 3.477 13 O -0.613 6.613 14 C -0.205 4.205 15 C -0.134 4.134 16 C -0.150 4.150 17 C -0.022 4.022 18 C -0.188 4.188 19 C 0.083 3.917 20 N -0.518 5.518 21 C 0.076 3.924 22 C -0.148 4.148 23 H 0.270 0.730 24 H 0.400 0.600 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -4.507 -0.642 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.154 4.154 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.060 0.940 9 C 0.194 3.806 10 H 0.049 0.951 11 N -0.322 5.322 12 C 0.310 3.690 13 O -0.497 6.497 14 C -0.226 4.226 15 C -0.172 4.172 16 C -0.187 4.187 17 C -0.031 4.031 18 C -0.208 4.208 19 C -0.073 4.073 20 N -0.228 5.228 21 C -0.080 4.080 22 C -0.168 4.168 23 H 0.080 0.920 24 H 0.237 0.763 25 H 0.151 0.849 26 H 0.104 0.896 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.195 0.805 32 H 0.187 0.813 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.207 -4.625 0.045 7.741 hybrid contribution 0.909 1.424 -0.792 1.866 sum -5.298 -3.201 -0.747 6.235 Atomic orbital electron populations 1.69754 1.06031 1.27805 1.47111 1.25359 0.95829 1.01011 0.93226 0.85794 0.79121 0.80221 0.77922 1.20795 1.19870 1.20350 1.21375 0.93997 0.91912 1.51329 0.93990 1.17346 0.85580 0.95086 0.82596 0.95081 1.46232 1.13078 1.60429 1.12449 1.20168 0.88907 0.76777 0.83139 1.90546 1.26028 1.53938 1.79197 1.22238 1.00791 1.01571 0.97976 1.22992 1.02068 0.90859 1.01244 1.22945 1.01441 1.02579 0.91759 1.20795 0.93503 0.91908 0.96870 1.22059 1.01597 1.03008 0.94126 1.22924 0.91934 0.96488 0.95950 1.67614 1.07555 1.11609 1.36013 1.22992 1.00006 0.96299 0.88677 1.22257 0.96695 0.98860 0.98980 0.92050 0.76291 0.84896 0.89607 0.84644 0.85439 0.90043 0.84933 0.80537 0.81325 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.05 9.19 21.45 0.20 -41.85 16 2 C 0.05 2.58 5.21 84.65 0.44 3.02 16 3 Si 0.94 42.16 29.55 68.60 2.03 44.18 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.55 -29.61 8.82 25.60 0.23 -29.38 16 8 H 0.04 2.40 7.83 -2.91 -0.02 2.37 16 9 C 0.30 14.54 2.46 43.50 0.11 14.65 16 10 H 0.03 1.63 7.53 -2.39 -0.02 1.61 16 11 N -0.67 -30.25 4.06 -449.68 -1.83 -32.07 16 12 C 0.52 23.40 7.57 87.66 0.66 24.07 16 13 O -0.61 -32.42 15.92 -3.03 -0.05 -32.47 16 14 C -0.20 -6.73 6.19 -11.54 -0.07 -6.80 16 15 C -0.13 -3.38 10.23 30.58 0.31 -3.07 16 16 C -0.15 -4.19 10.04 30.58 0.31 -3.89 16 17 C -0.02 -0.94 4.84 -19.67 -0.10 -1.04 16 18 C -0.19 -7.26 9.82 22.36 0.22 -7.04 16 19 C 0.08 2.87 11.18 84.68 0.95 3.82 16 20 N -0.52 -18.93 10.36 -195.84 -2.03 -20.96 16 21 C 0.08 2.74 11.18 84.68 0.95 3.68 16 22 C -0.15 -5.92 8.04 22.36 0.18 -5.74 16 23 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 24 H 0.40 16.63 5.95 -92.71 -0.55 16.08 16 25 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.08 2.67 7.67 -2.39 -0.02 2.66 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 31 H 0.18 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.15 5.90 5.04 -2.91 -0.01 5.88 16 Total: -1.00 -63.05 285.04 3.08 -59.97 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.58 Total: 30.91 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.18 Total: -7.72 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.66 Total: -94.89 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.05 3.08 -59.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686986.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.561 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds