Wall clock time and date at job start Mon Mar 30 2020 04:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46984 * 2 1 4 4 N 1.46501 * 109.46819 * 240.00420 * 2 1 3 5 5 C 1.34636 * 125.76286 * 54.27361 * 4 2 1 6 6 O 1.21694 * 125.22371 * 359.97438 * 5 4 2 7 7 N 1.34667 * 109.55648 * 180.02562 * 5 4 2 8 8 H 0.96995 * 125.90809 * 179.97438 * 7 5 4 9 9 C 1.39369 * 108.19197 * 359.97438 * 7 5 4 10 10 C 1.38838 * 133.21521 * 179.97438 * 9 7 5 11 11 C 1.38686 * 120.40481 * 180.02562 * 10 9 7 12 12 C 1.37619 * 120.60440 * 359.97438 * 11 10 9 13 13 C 1.40780 * 119.99579 * 359.97438 * 12 11 10 14 14 C 1.41067 * 120.33733 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00344 * 141.80455 * 14 13 12 16 16 C 1.39962 * 119.99707 * 321.80868 * 14 13 12 17 17 N 1.30855 * 119.99686 * 170.56641 * 16 14 13 18 18 Si 1.86800 * 120.00236 * 350.55834 * 16 14 13 19 19 H 1.48497 * 109.46771 * 89.73904 * 18 16 14 20 20 H 1.48498 * 109.47302 * 209.73724 * 18 16 14 21 21 H 1.48501 * 109.47164 * 329.74301 * 18 16 14 22 22 C 1.38459 * 125.76173 * 233.97044 * 4 2 1 23 23 H 1.08999 * 109.47705 * 59.99617 * 1 2 3 24 24 H 1.09001 * 109.46809 * 299.99669 * 1 2 3 25 25 H 1.09002 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47705 * 120.00383 * 2 1 3 27 27 H 1.08992 * 109.46857 * 60.00515 * 3 2 1 28 28 H 1.08997 * 109.47079 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46809 * 300.00329 * 3 2 1 30 30 H 1.08000 * 119.80575 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.69880 * 179.97438 * 11 10 9 32 32 H 1.07998 * 120.00077 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99919 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 1.6790 -0.3996 -2.4663 6 8 0.9132 0.4840 -2.8034 7 7 2.3165 -1.2372 -3.3063 8 1 2.2434 -1.2375 -4.2735 9 6 3.0996 -2.1036 -2.5457 10 6 3.9507 -3.1506 -2.8726 11 6 4.6138 -3.8531 -1.8775 12 6 4.4396 -3.5240 -0.5527 13 6 3.5823 -2.4653 -0.1973 14 6 3.3980 -2.1222 1.1585 15 1 3.3082 -1.0850 1.4457 16 6 3.3316 -3.1260 2.1316 17 7 3.3467 -2.8087 3.4010 18 14 3.2214 -4.9187 1.6183 19 1 4.5896 -5.4793 1.4813 20 1 2.4739 -5.6836 2.6485 21 1 2.5130 -5.0183 0.3169 22 6 2.9110 -1.7487 -1.2120 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 4.0974 -3.4198 -3.9082 31 1 5.2729 -4.6658 -2.1447 32 1 4.9611 -4.0772 0.2143 33 1 3.3011 -3.5044 4.0754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:01 Heat of formation + Delta-G solvation = -5.502303 kcal Electronic energy + Delta-G solvation = -18252.137369 eV Core-core repulsion = 15470.385808 eV Total energy + Delta-G solvation = -2781.751561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.20260 -39.10062 -37.31140 -36.83753 -35.10143 -33.06677 -31.54319 -29.45291 -28.18064 -26.91242 -24.42469 -23.31409 -22.71573 -20.74716 -19.81421 -18.73118 -17.79546 -17.15184 -16.95864 -16.51277 -16.20748 -15.48187 -15.29670 -14.71003 -14.49515 -14.35508 -14.01705 -13.71685 -13.32039 -13.11330 -13.05951 -12.78844 -12.57883 -12.47185 -12.17982 -11.81469 -11.56139 -11.52977 -11.10192 -11.03956 -10.89290 -9.09476 -8.77130 -8.58317 -6.42739 0.63521 0.80040 1.34491 1.44840 1.55344 1.60134 2.00788 2.18713 2.61045 2.66719 3.38211 3.82236 4.05568 4.10924 4.31482 4.39174 4.53893 4.60768 4.66837 4.74457 4.81339 4.82913 4.92932 5.06294 5.20091 5.22233 5.30941 5.40530 5.63627 5.85012 5.91085 6.04258 6.23843 6.27726 6.51496 6.75173 6.84736 7.42235 8.28370 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.011371 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.493899 B = 2461.882543 C = 3409.491089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 C -0.151 4.151 4 N -0.514 5.514 5 C 0.659 3.341 6 O -0.607 6.607 7 N -0.634 5.634 8 H 0.439 0.561 9 C 0.103 3.897 10 C -0.199 4.199 11 C -0.066 4.066 12 C -0.241 4.241 13 C 0.096 3.904 14 C -0.480 4.480 15 H 0.072 0.928 16 C 0.052 3.948 17 N -0.854 5.854 18 Si 0.956 3.044 19 H -0.249 1.249 20 H -0.288 1.288 21 H -0.254 1.254 22 C -0.016 4.016 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.113 0.887 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -1.962 -6.806 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 C -0.209 4.209 4 N -0.234 5.234 5 C 0.361 3.639 6 O -0.490 6.490 7 N -0.279 5.279 8 H 0.282 0.718 9 C 0.001 3.999 10 C -0.221 4.221 11 C -0.085 4.085 12 C -0.262 4.262 13 C 0.092 3.908 14 C -0.510 4.510 15 H 0.090 0.910 16 C -0.161 4.161 17 N -0.481 5.481 18 Si 0.780 3.220 19 H -0.174 1.174 20 H -0.215 1.215 21 H -0.178 1.178 22 C -0.117 4.117 23 H 0.080 0.920 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.131 0.869 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.469 -1.294 -6.562 6.705 hybrid contribution -0.107 -0.398 -0.074 0.419 sum -0.575 -1.693 -6.636 6.872 Atomic orbital electron populations 1.22057 0.93551 1.01937 1.03529 1.21633 0.95461 0.93642 0.86369 1.22048 1.00702 0.94890 1.03211 1.44866 1.41292 1.31030 1.06253 1.16123 0.83073 0.83400 0.81298 1.90898 1.42112 1.36209 1.79755 1.42817 1.43525 1.31734 1.09810 0.71848 1.18172 0.97789 0.95828 0.88137 1.19875 1.03278 0.98563 1.00420 1.20829 0.97887 0.98494 0.91292 1.21058 1.04446 1.03743 0.96976 1.16973 0.90527 0.91748 0.91600 1.19276 1.46044 0.95420 0.90226 0.91029 1.26626 0.90809 1.04646 0.94049 1.69670 1.38437 1.37986 1.02037 0.85613 0.80150 0.77489 0.78758 1.17363 1.21525 1.17780 1.18501 1.01069 0.97438 0.94658 0.92003 0.88993 0.93531 0.87172 0.88956 0.93550 0.92567 0.83727 0.83395 0.86939 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.14 71.98 0.66 -4.79 16 2 C 0.13 5.23 3.33 44.99 0.15 5.38 16 3 C -0.15 -5.34 9.30 71.98 0.67 -4.67 16 4 N -0.51 -22.18 2.64 -624.51 -1.65 -23.83 16 5 C 0.66 27.59 8.25 179.13 1.48 29.07 16 6 O -0.61 -27.18 15.55 -4.33 -0.07 -27.25 16 7 N -0.63 -22.43 6.17 -317.47 -1.96 -24.39 16 8 H 0.44 12.05 8.96 -92.71 -0.83 11.22 16 9 C 0.10 3.94 7.25 38.34 0.28 4.22 16 10 C -0.20 -6.53 10.07 22.52 0.23 -6.30 16 11 C -0.07 -2.22 10.00 22.23 0.22 -2.00 16 12 C -0.24 -9.96 7.08 22.75 0.16 -9.80 16 13 C 0.10 4.48 4.98 -21.24 -0.11 4.38 16 14 C -0.48 -24.37 8.14 23.38 0.19 -24.18 16 15 H 0.07 3.90 6.12 -2.91 -0.02 3.88 16 16 C 0.05 2.60 5.48 85.26 0.47 3.07 16 17 N -0.85 -43.92 13.93 21.83 0.30 -43.61 16 18 Si 0.96 39.56 24.55 68.60 1.68 41.24 16 19 H -0.25 -9.47 6.66 99.48 0.66 -8.81 16 20 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.25 -10.75 6.88 99.48 0.68 -10.07 16 22 C -0.02 -0.72 6.78 39.08 0.27 -0.46 16 23 H 0.06 2.30 6.58 -2.39 -0.02 2.28 16 24 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.11 4.93 4.43 -2.39 -0.01 4.92 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.04 7.35 -2.39 -0.02 2.03 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.11 4.59 5.11 -2.91 -0.01 4.57 16 33 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 Total: -1.00 -59.00 268.81 3.23 -55.77 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.25 Total: 28.14 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.66 Total: -6.08 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.30 Total: -91.82 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.07 Total: -27.25 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.68 Total: 41.24 kcal Total: -59.00 3.23 -55.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.267 kcal (2) G-P(sol) polarization free energy of solvation -58.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds