Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09006 * 109.59981 * 300.04547 * 9 7 2 11 11 C 1.53342 * 109.60266 * 60.53204 * 9 7 2 12 12 C 1.53080 * 108.41140 * 187.30192 * 11 9 7 13 13 C 1.50176 * 109.88822 * 311.08625 * 12 11 9 14 14 O 1.21283 * 118.24708 * 197.60208 * 13 12 11 15 15 N 1.33355 * 123.50970 * 17.58572 * 13 12 11 16 16 C 1.45753 * 124.10624 * 357.79333 * 15 13 12 17 17 H 1.08998 * 109.13357 * 258.84870 * 16 15 13 18 18 C 1.50693 * 109.29949 * 139.36439 * 16 15 13 19 19 C 1.38649 * 120.79162 * 318.68722 * 18 16 15 20 20 C 1.38213 * 119.15903 * 179.75853 * 19 18 16 21 21 N 1.31867 * 120.76231 * 0.52596 * 20 19 18 22 22 C 1.31867 * 121.72968 * 359.74176 * 21 20 19 23 23 C 1.38204 * 120.76147 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.68070 * 307.02211 * 11 9 7 26 26 H 1.09000 * 109.67527 * 67.55829 * 11 9 7 27 27 H 1.09005 * 109.40511 * 190.96085 * 12 11 9 28 28 H 1.08992 * 109.33327 * 71.17368 * 12 11 9 29 29 H 0.96996 * 117.94808 * 177.77703 * 15 13 12 30 30 H 1.07993 * 120.42101 * 359.97438 * 19 18 16 31 31 H 1.07995 * 119.61273 * 180.29475 * 20 19 18 32 32 H 1.08001 * 119.61685 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.41296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6190 -2.5606 0.8807 11 6 0.3837 -2.5868 -1.2669 12 6 -0.5039 -3.8293 -1.1582 13 6 0.3277 -5.0190 -0.7730 14 8 -0.1342 -6.1255 -0.9556 15 7 1.5469 -4.9240 -0.2412 16 6 2.2419 -3.6638 -0.0105 17 1 2.9748 -3.5098 -0.8024 18 6 2.9496 -3.7215 1.3187 19 6 2.3377 -4.2917 2.4245 20 6 3.0197 -4.3311 3.6260 21 7 4.2332 -3.8255 3.7296 22 6 4.8436 -3.2709 2.7007 23 6 4.2260 -3.2006 1.4663 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2399 -1.6964 -1.3463 26 1 1.0224 -2.6676 -2.1465 27 1 -0.9823 -4.0179 -2.1193 28 1 -1.2686 -3.6612 -0.4000 29 1 1.9995 -5.7450 0.0078 30 1 1.3421 -4.7030 2.3471 31 1 2.5518 -4.7779 4.4907 32 1 5.8376 -2.8670 2.8241 33 1 4.7310 -2.7447 0.6275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259735983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -14.352974 kcal Electronic energy + Delta-G solvation = -17898.851686 eV Core-core repulsion = 15116.716331 eV Total energy + Delta-G solvation = -2782.135355 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27281 -39.16493 -36.37287 -33.52859 -32.30575 -31.32542 -30.79875 -28.75446 -25.33576 -23.73863 -23.05985 -21.81570 -21.20187 -18.32186 -17.34188 -16.62713 -15.93493 -15.72688 -15.25874 -14.93132 -14.57202 -14.43168 -13.57405 -13.38193 -13.23777 -12.97889 -12.76667 -12.52919 -11.42555 -11.38514 -11.07121 -11.03919 -10.77038 -10.73806 -10.07608 -9.99951 -9.33110 -9.23520 -9.16685 -8.88879 -8.78081 -8.61955 -8.42710 -6.21333 -4.28782 1.51000 1.63456 3.16547 3.18384 3.27783 3.29194 3.81931 4.20687 4.29216 4.76849 4.96991 5.12129 5.13290 5.37896 5.51560 5.56171 5.79523 5.88827 5.90746 6.02078 6.09035 6.18117 6.34389 6.39248 6.70459 6.82657 6.92522 7.06540 7.24875 7.45461 7.62286 7.72892 7.85287 8.13797 8.29031 8.69740 8.74825 9.37505 10.85110 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.011724 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.987111 B = 2387.591463 C = 3925.446228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.051 3.949 10 H 0.039 0.961 11 C -0.118 4.118 12 C -0.136 4.136 13 C 0.526 3.474 14 O -0.583 6.583 15 N -0.713 5.713 16 C 0.177 3.823 17 H 0.079 0.921 18 C -0.020 4.020 19 C -0.160 4.160 20 C 0.091 3.909 21 N -0.495 5.495 22 C 0.090 3.910 23 C -0.150 4.150 24 H 0.263 0.737 25 H 0.108 0.892 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.387 0.613 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -4.559 1.331 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.032 3.968 10 H 0.057 0.943 11 C -0.156 4.156 12 C -0.176 4.176 13 C 0.315 3.685 14 O -0.464 6.464 15 N -0.363 5.363 16 C 0.073 3.927 17 H 0.097 0.903 18 C -0.029 4.029 19 C -0.181 4.181 20 C -0.066 4.066 21 N -0.205 5.205 22 C -0.066 4.066 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.221 0.779 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.843 -4.812 1.966 7.105 hybrid contribution 0.165 0.856 -0.636 1.079 sum 5.008 -3.956 1.331 6.519 Atomic orbital electron populations 1.69857 1.05912 1.26819 1.49703 1.24905 0.94858 0.99183 0.94616 0.86519 0.80164 0.83573 0.77709 1.19634 1.20896 1.20987 1.20976 0.92996 0.89581 1.51728 0.92033 1.18995 0.92075 0.90353 0.95329 0.94279 1.21834 0.98437 0.96714 0.98596 1.21737 0.98994 0.94095 1.02759 1.20522 0.81251 0.91242 0.75518 1.90669 1.70713 1.28594 1.56400 1.45725 1.17633 1.09659 1.63258 1.20350 0.95441 0.84957 0.91937 0.90292 1.20469 0.93257 0.93162 0.95993 1.21922 1.01072 1.01479 0.93586 1.22591 0.90826 0.96454 0.96717 1.67588 1.10403 1.09937 1.32576 1.22615 0.99556 0.95922 0.88521 1.21962 0.95346 1.00248 0.99454 0.92705 0.87389 0.93853 0.89819 0.88924 0.77868 0.85374 0.83375 0.83250 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.87 11.36 55.43 0.63 -22.24 16 2 C 0.07 1.66 5.28 -17.82 -0.09 1.57 16 3 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -12.19 8.09 -34.44 -0.28 -12.47 16 8 H 0.06 1.42 6.95 -52.49 -0.36 1.06 16 9 C 0.05 1.10 1.58 -91.63 -0.15 0.95 16 10 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 11 C -0.12 -2.43 5.18 -26.51 -0.14 -2.56 16 12 C -0.14 -2.52 6.03 -28.10 -0.17 -2.69 16 13 C 0.53 10.05 7.71 -11.87 -0.09 9.96 16 14 O -0.58 -12.60 17.78 5.55 0.10 -12.50 16 15 N -0.71 -12.19 4.50 -55.99 -0.25 -12.44 16 16 C 0.18 3.17 2.70 -69.53 -0.19 2.98 16 17 H 0.08 1.38 8.00 -51.93 -0.42 0.96 16 18 C -0.02 -0.34 4.45 -104.32 -0.46 -0.80 16 19 C -0.16 -2.60 9.38 -39.44 -0.37 -2.97 16 20 C 0.09 1.39 11.18 -17.55 -0.20 1.20 16 21 N -0.50 -8.05 10.36 -13.25 -0.14 -8.19 16 22 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 23 C -0.15 -2.36 9.07 -39.44 -0.36 -2.72 16 24 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.11 2.50 6.01 -51.93 -0.31 2.19 16 26 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.39 6.03 8.63 -40.82 -0.35 5.68 16 30 H 0.13 2.02 7.83 -52.49 -0.41 1.61 16 31 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.13 1.92 7.93 -52.48 -0.42 1.50 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -27.84 278.98 -7.11 -34.94 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.94 Total: 8.02 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.69 Total: -6.40 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.10 Total: -12.50 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.84 -7.11 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds