Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09006 * 109.59981 * 300.04547 * 9 7 2 11 11 C 1.53342 * 109.60266 * 60.53204 * 9 7 2 12 12 C 1.53080 * 108.41140 * 187.30192 * 11 9 7 13 13 C 1.50176 * 109.88822 * 311.08625 * 12 11 9 14 14 O 1.21283 * 118.24708 * 197.60208 * 13 12 11 15 15 N 1.33355 * 123.50970 * 17.58572 * 13 12 11 16 16 C 1.45753 * 124.10624 * 357.79333 * 15 13 12 17 17 H 1.08998 * 109.13357 * 258.84870 * 16 15 13 18 18 C 1.50693 * 109.29949 * 139.36439 * 16 15 13 19 19 C 1.38649 * 120.79162 * 318.68722 * 18 16 15 20 20 C 1.38213 * 119.15903 * 179.75853 * 19 18 16 21 21 N 1.31867 * 120.76231 * 0.52596 * 20 19 18 22 22 C 1.31867 * 121.72968 * 359.74176 * 21 20 19 23 23 C 1.38204 * 120.76147 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.68070 * 307.02211 * 11 9 7 26 26 H 1.09000 * 109.67527 * 67.55829 * 11 9 7 27 27 H 1.09005 * 109.40511 * 190.96085 * 12 11 9 28 28 H 1.08992 * 109.33327 * 71.17368 * 12 11 9 29 29 H 0.96996 * 117.94808 * 177.77703 * 15 13 12 30 30 H 1.07993 * 120.42101 * 359.97438 * 19 18 16 31 31 H 1.07995 * 119.61273 * 180.29475 * 20 19 18 32 32 H 1.08001 * 119.61685 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.41296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6190 -2.5606 0.8807 11 6 0.3837 -2.5868 -1.2669 12 6 -0.5039 -3.8293 -1.1582 13 6 0.3277 -5.0190 -0.7730 14 8 -0.1342 -6.1255 -0.9556 15 7 1.5469 -4.9240 -0.2412 16 6 2.2419 -3.6638 -0.0105 17 1 2.9748 -3.5098 -0.8024 18 6 2.9496 -3.7215 1.3187 19 6 2.3377 -4.2917 2.4245 20 6 3.0197 -4.3311 3.6260 21 7 4.2332 -3.8255 3.7296 22 6 4.8436 -3.2709 2.7007 23 6 4.2260 -3.2006 1.4663 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2399 -1.6964 -1.3463 26 1 1.0224 -2.6676 -2.1465 27 1 -0.9823 -4.0179 -2.1193 28 1 -1.2686 -3.6612 -0.4000 29 1 1.9995 -5.7450 0.0078 30 1 1.3421 -4.7030 2.3471 31 1 2.5518 -4.7779 4.4907 32 1 5.8376 -2.8670 2.8241 33 1 4.7310 -2.7447 0.6275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259735983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -31.308012 kcal Electronic energy + Delta-G solvation = -17899.586912 eV Core-core repulsion = 15116.716331 eV Total energy + Delta-G solvation = -2782.870580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67681 -40.54673 -37.94522 -35.19872 -33.79800 -32.89608 -32.00707 -30.34459 -26.96957 -25.32747 -24.29242 -23.35415 -22.62894 -19.91495 -18.91881 -18.08908 -17.46315 -17.13569 -16.57838 -16.48662 -16.15675 -15.93899 -14.93407 -14.88723 -14.54335 -14.50322 -14.28916 -14.00040 -13.10472 -12.98205 -12.78038 -12.50574 -12.43214 -12.32740 -11.75595 -11.68815 -10.95120 -10.81247 -10.59200 -10.41817 -10.26355 -9.97047 -9.95794 -8.09321 -6.20404 0.31019 0.36450 1.43602 1.48972 1.56181 1.62409 2.34245 2.49913 2.98106 3.21979 3.60543 3.68341 3.79535 4.02054 4.26465 4.29323 4.34246 4.36071 4.46453 4.61561 4.79230 4.82039 4.97101 5.07938 5.14258 5.29065 5.45150 5.64106 5.83043 5.85237 5.86479 5.99905 6.19565 6.42795 6.87475 7.09209 7.22306 7.47911 8.96406 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.011724 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.987111 B = 2387.591463 C = 3925.446228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.052 3.948 10 H 0.008 0.992 11 C -0.111 4.111 12 C -0.129 4.129 13 C 0.528 3.472 14 O -0.607 6.607 15 N -0.700 5.700 16 C 0.189 3.811 17 H 0.089 0.911 18 C -0.037 4.037 19 C -0.170 4.170 20 C 0.089 3.911 21 N -0.510 5.510 22 C 0.090 3.910 23 C -0.156 4.156 24 H 0.260 0.740 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.398 0.602 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -4.756 1.501 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.219 1.219 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.033 3.967 10 H 0.026 0.974 11 C -0.149 4.149 12 C -0.169 4.169 13 C 0.317 3.683 14 O -0.491 6.491 15 N -0.349 5.349 16 C 0.084 3.916 17 H 0.107 0.893 18 C -0.045 4.045 19 C -0.190 4.190 20 C -0.067 4.067 21 N -0.220 5.220 22 C -0.066 4.066 23 C -0.176 4.176 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.234 0.766 30 H 0.145 0.855 31 H 0.191 0.809 32 H 0.198 0.802 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.399 -5.014 2.143 8.407 hybrid contribution -0.285 0.914 -0.646 1.155 sum 6.114 -4.100 1.496 7.512 Atomic orbital electron populations 1.69978 1.07034 1.27081 1.51127 1.25555 0.95448 1.01882 0.94962 0.85710 0.79718 0.80478 0.77018 1.18453 1.21041 1.21851 1.21313 0.93467 0.90391 1.50241 0.91358 1.18854 0.92368 0.91208 0.94234 0.97410 1.21659 0.98315 0.96541 0.98422 1.21661 0.98607 0.92957 1.03673 1.20508 0.81632 0.90790 0.75408 1.90663 1.71362 1.29324 1.57729 1.45559 1.17041 1.10020 1.62237 1.20119 0.94526 0.83750 0.93178 0.89337 1.20473 0.94077 0.94427 0.95566 1.22002 1.01184 1.01871 0.93979 1.22992 0.90632 0.95912 0.97207 1.67674 1.10768 1.10379 1.33135 1.23123 1.00614 0.95003 0.87899 1.22172 0.94961 1.00074 1.00379 0.93067 0.89994 0.93300 0.88149 0.89111 0.76644 0.85516 0.80891 0.80249 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.75 11.36 21.45 0.24 -47.50 16 2 C 0.02 1.03 5.28 84.66 0.45 1.48 16 3 Si 0.94 39.79 29.54 68.60 2.03 41.82 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.52 -24.05 8.09 25.60 0.21 -23.84 16 8 H 0.07 3.03 6.95 -2.91 -0.02 3.01 16 9 C 0.05 2.22 1.58 -11.45 -0.02 2.21 16 10 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 11 C -0.11 -4.56 5.18 30.74 0.16 -4.40 16 12 C -0.13 -4.73 6.03 29.71 0.18 -4.55 16 13 C 0.53 19.64 7.71 87.71 0.68 20.32 16 14 O -0.61 -25.65 17.78 -3.04 -0.05 -25.71 16 15 N -0.70 -23.02 4.50 -450.24 -2.03 -25.05 16 16 C 0.19 6.48 2.70 44.36 0.12 6.60 16 17 H 0.09 2.91 8.00 -2.39 -0.02 2.89 16 18 C -0.04 -1.18 4.45 -19.67 -0.09 -1.27 16 19 C -0.17 -5.31 9.38 22.36 0.21 -5.10 16 20 C 0.09 2.56 11.18 84.68 0.95 3.51 16 21 N -0.51 -15.40 10.36 -195.84 -2.03 -17.43 16 22 C 0.09 2.47 11.18 84.68 0.95 3.42 16 23 C -0.16 -4.55 9.07 22.36 0.20 -4.35 16 24 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 25 H 0.08 3.85 6.01 -2.39 -0.01 3.84 16 26 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 27 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 28 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.40 11.77 8.63 -92.71 -0.80 10.97 16 30 H 0.13 3.91 7.83 -2.91 -0.02 3.89 16 31 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.15 3.83 7.93 -2.91 -0.02 3.80 16 Total: -1.00 -57.88 278.98 2.48 -55.41 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.33 Total: 24.44 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 3.99 Total: -5.97 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -3.81 Total: -89.98 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -57.88 2.48 -55.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -57.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds