Wall clock time and date at job start Mon Mar 30 2020 04:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39284 * 125.81946 * 2 1 4 4 C 1.38657 * 133.33119 * 0.22514 * 3 2 1 5 5 C 1.38109 * 119.84959 * 180.02562 * 4 3 2 6 6 C 1.38439 * 120.28270 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.85550 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46961 * 90.00416 * 7 6 5 9 9 C 1.50695 * 109.46959 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99957 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00194 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99415 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47232 * 89.99533 * 13 11 9 15 15 H 1.48499 * 109.47166 * 209.99621 * 13 11 9 16 16 H 1.48508 * 109.47357 * 329.99788 * 13 11 9 17 17 C 1.38102 * 120.28169 * 359.95754 * 6 5 4 18 18 C 1.38654 * 119.85378 * 0.09446 * 17 6 5 19 19 N 1.39289 * 133.33659 * 179.97438 * 18 17 6 20 20 H 0.97002 * 125.81805 * 359.97438 * 19 18 17 21 21 C 1.34634 * 108.36313 * 179.97438 * 19 18 17 22 22 O 1.21686 * 125.16487 * 180.02562 * 21 19 18 23 23 H 1.09000 * 109.46989 * 179.71688 * 1 2 3 24 24 H 1.09004 * 109.47006 * 299.71716 * 1 2 3 25 25 H 1.08995 * 109.47308 * 59.71687 * 1 2 3 26 26 H 1.07998 * 120.08019 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.85676 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.46724 * 210.00598 * 7 6 5 29 29 H 1.08998 * 109.47102 * 329.99819 * 7 6 5 30 30 H 1.08994 * 109.47242 * 299.99838 * 8 7 6 31 31 H 1.09004 * 109.46853 * 59.99683 * 8 7 6 32 32 H 0.97009 * 119.99616 * 180.02562 * 12 11 9 33 33 H 1.08008 * 120.07165 * 179.97438 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1294 0.0000 4 6 2.0191 2.4912 0.0040 5 6 3.0662 3.3918 0.0022 6 6 4.3750 2.9407 -0.0030 7 6 5.5102 3.9319 -0.0044 8 6 5.8990 4.2639 1.4376 9 6 7.0346 5.2546 1.4363 10 1 7.4388 5.6114 0.5005 11 6 7.5582 5.7047 2.6297 12 7 7.0662 5.2698 3.7692 13 14 8.9653 6.9332 2.6281 14 1 8.4173 8.3135 2.6337 15 1 9.8028 6.7282 3.8371 16 1 9.7943 6.7348 1.4120 17 6 4.6447 1.5862 -0.0056 18 6 3.6002 0.6744 -0.0049 19 7 3.5462 -0.7174 -0.0074 20 1 4.3102 -1.3151 -0.0105 21 6 2.2530 -1.0918 -0.0046 22 8 1.8564 -2.2422 -0.0052 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3633 0.5095 0.8925 25 1 -0.3633 0.5182 -0.8874 26 1 0.9994 2.8469 0.0084 27 1 2.8630 4.4525 0.0057 28 1 6.3676 3.5016 -0.5221 29 1 5.1969 4.8424 -0.5151 30 1 5.0417 4.6941 1.9552 31 1 6.2123 3.3532 1.9483 32 1 7.4343 5.5868 4.6089 33 1 5.6671 1.2380 -0.0101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:40 Heat of formation + Delta-G solvation = 8.271015 kcal Electronic energy + Delta-G solvation = -16855.825696 eV Core-core repulsion = 14074.671391 eV Total energy + Delta-G solvation = -2781.154305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34051 -38.44679 -36.23831 -34.95783 -33.61743 -31.69908 -29.77981 -28.54553 -27.37773 -24.84437 -22.51151 -22.11222 -21.25394 -20.34876 -17.96795 -17.31340 -16.50195 -16.33961 -15.60996 -15.47149 -14.53419 -14.50203 -13.88891 -13.67076 -13.58823 -12.99437 -12.59800 -12.51984 -12.37035 -11.86636 -11.30854 -11.07983 -10.92806 -10.82610 -10.67108 -10.51907 -10.21573 -9.88485 -9.46273 -9.13555 -8.38654 -8.22674 -7.57223 -6.02915 -4.06222 1.40042 1.57912 2.31982 2.91986 3.30054 3.36675 3.37421 3.39667 3.91828 4.43617 4.62347 4.74012 5.13997 5.14391 5.32874 5.33177 5.40034 5.49794 5.56372 5.62135 5.97704 6.10770 6.24034 6.46179 6.56950 6.61780 6.78930 6.91848 6.97824 7.03910 7.36774 7.64251 7.76981 7.96579 8.22508 8.36598 9.00953 9.58244 11.07980 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046755 B = 0.004290 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.720952 B = 6525.556071 C = 6719.519622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.542 5.542 3 C 0.067 3.933 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.043 4.043 7 C -0.078 4.078 8 C 0.029 3.971 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.106 4.106 18 C 0.088 3.912 19 N -0.643 5.643 20 H 0.433 0.567 21 C 0.680 3.320 22 O -0.571 6.571 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 -6.888 -8.296 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.265 5.265 3 C -0.032 4.032 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.045 4.045 7 C -0.115 4.115 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.127 4.127 18 C -0.013 4.013 19 N -0.288 5.288 20 H 0.274 0.726 21 C 0.382 3.618 22 O -0.448 6.448 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.076 -7.680 -8.102 15.726 hybrid contribution 1.107 0.394 0.241 1.199 sum -9.969 -7.286 -7.862 14.638 Atomic orbital electron populations 1.21697 0.75270 1.04516 1.02641 1.44845 1.07017 1.04740 1.69929 1.17968 0.87893 0.89156 1.08210 1.19990 0.99921 0.88428 1.04006 1.20873 0.91308 0.99573 1.00788 1.20116 0.95742 0.93348 0.95305 1.20844 0.93421 0.95359 1.01902 1.19092 0.96389 0.96696 0.88648 1.21251 1.17262 1.25317 0.92352 0.92541 1.25016 0.97061 0.96609 0.95661 1.69971 1.42065 1.43971 0.97286 0.86605 0.82329 0.81596 0.77531 1.20649 1.21261 1.19848 1.20023 0.97074 0.91271 1.04314 1.17999 0.94341 0.82901 1.06064 1.42900 1.08184 1.06093 1.71617 0.72620 1.15916 0.80977 0.84451 0.80490 1.91027 1.76805 1.17051 1.59962 0.89072 0.90919 0.91012 0.85682 0.84866 0.92001 0.91766 0.96277 0.96393 0.92965 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.16 59.84 0.67 1.61 16 2 N -0.54 -7.32 3.19 -126.33 -0.40 -7.72 16 3 C 0.07 0.95 6.83 -83.80 -0.57 0.38 16 4 C -0.10 -1.32 10.02 -39.47 -0.40 -1.72 16 5 C -0.11 -1.52 9.68 -39.55 -0.38 -1.91 16 6 C -0.04 -0.70 5.13 -104.59 -0.54 -1.24 16 7 C -0.08 -1.46 5.28 -27.88 -0.15 -1.61 16 8 C 0.03 0.70 4.95 -27.89 -0.14 0.56 16 9 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 10 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.11 -1.60 9.71 -39.48 -0.38 -1.99 16 18 C 0.09 1.29 7.26 -83.80 -0.61 0.69 16 19 N -0.64 -8.77 6.15 -14.30 -0.09 -8.85 16 20 H 0.43 4.74 8.96 -40.82 -0.37 4.37 16 21 C 0.68 10.46 8.83 -87.17 -0.77 9.69 16 22 O -0.57 -10.17 17.53 5.20 0.09 -10.08 16 23 H 0.09 0.85 7.67 -51.93 -0.40 0.46 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -32.42 290.02 -8.09 -40.52 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.10 Total: -0.21 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.68 Total: -8.50 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.25 Total: -42.12 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.42 -8.09 -40.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.791 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds