Wall clock time and date at job start Mon Mar 30 2020 04:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39284 * 125.81946 * 2 1 4 4 C 1.38657 * 133.33119 * 0.22514 * 3 2 1 5 5 C 1.38109 * 119.84959 * 180.02562 * 4 3 2 6 6 C 1.38439 * 120.28270 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.85550 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46961 * 90.00416 * 7 6 5 9 9 C 1.50695 * 109.46959 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99957 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00194 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99415 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47232 * 89.99533 * 13 11 9 15 15 H 1.48499 * 109.47166 * 209.99621 * 13 11 9 16 16 H 1.48508 * 109.47357 * 329.99788 * 13 11 9 17 17 C 1.38102 * 120.28169 * 359.95754 * 6 5 4 18 18 C 1.38654 * 119.85378 * 0.09446 * 17 6 5 19 19 N 1.39289 * 133.33659 * 179.97438 * 18 17 6 20 20 H 0.97002 * 125.81805 * 359.97438 * 19 18 17 21 21 C 1.34634 * 108.36313 * 179.97438 * 19 18 17 22 22 O 1.21686 * 125.16487 * 180.02562 * 21 19 18 23 23 H 1.09000 * 109.46989 * 179.71688 * 1 2 3 24 24 H 1.09004 * 109.47006 * 299.71716 * 1 2 3 25 25 H 1.08995 * 109.47308 * 59.71687 * 1 2 3 26 26 H 1.07998 * 120.08019 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.85676 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.46724 * 210.00598 * 7 6 5 29 29 H 1.08998 * 109.47102 * 329.99819 * 7 6 5 30 30 H 1.08994 * 109.47242 * 299.99838 * 8 7 6 31 31 H 1.09004 * 109.46853 * 59.99683 * 8 7 6 32 32 H 0.97009 * 119.99616 * 180.02562 * 12 11 9 33 33 H 1.08008 * 120.07165 * 179.97438 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1294 0.0000 4 6 2.0191 2.4912 0.0040 5 6 3.0662 3.3918 0.0022 6 6 4.3750 2.9407 -0.0030 7 6 5.5102 3.9319 -0.0044 8 6 5.8990 4.2639 1.4376 9 6 7.0346 5.2546 1.4363 10 1 7.4388 5.6114 0.5005 11 6 7.5582 5.7047 2.6297 12 7 7.0662 5.2698 3.7692 13 14 8.9653 6.9332 2.6281 14 1 8.4173 8.3135 2.6337 15 1 9.8028 6.7282 3.8371 16 1 9.7943 6.7348 1.4120 17 6 4.6447 1.5862 -0.0056 18 6 3.6002 0.6744 -0.0049 19 7 3.5462 -0.7174 -0.0074 20 1 4.3102 -1.3151 -0.0105 21 6 2.2530 -1.0918 -0.0046 22 8 1.8564 -2.2422 -0.0052 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3633 0.5095 0.8925 25 1 -0.3633 0.5182 -0.8874 26 1 0.9994 2.8469 0.0084 27 1 2.8630 4.4525 0.0057 28 1 6.3676 3.5016 -0.5221 29 1 5.1969 4.8424 -0.5151 30 1 5.0417 4.6941 1.9552 31 1 6.2123 3.3532 1.9483 32 1 7.4343 5.5868 4.6089 33 1 5.6671 1.2380 -0.0101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:39 Heat of formation + Delta-G solvation = -11.503808 kcal Electronic energy + Delta-G solvation = -16856.683197 eV Core-core repulsion = 14074.671391 eV Total energy + Delta-G solvation = -2782.011806 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.45448 -39.64708 -37.51479 -35.99199 -35.45919 -33.36007 -31.01860 -29.83209 -28.50408 -26.53023 -23.74152 -23.57941 -22.31767 -21.82614 -19.07021 -18.66844 -18.23411 -17.58779 -16.73399 -16.62149 -16.46563 -15.79623 -14.94906 -14.84560 -14.50689 -14.41827 -14.23196 -13.99188 -13.52179 -13.26485 -12.90262 -12.80084 -12.49727 -12.15774 -11.96063 -11.84049 -11.65573 -11.59024 -11.17019 -10.97168 -10.49805 -9.34634 -8.75854 -8.14417 -6.25426 0.27357 0.41277 1.31072 1.44907 1.45349 1.56299 1.76087 2.27806 2.45365 2.77079 3.19210 3.56194 3.83811 4.01734 4.24656 4.37024 4.43742 4.49947 4.59357 4.74911 4.77126 4.88316 4.97101 5.08516 5.23816 5.31917 5.48876 5.58098 5.62406 5.74094 5.86474 5.92301 5.94805 6.24878 6.30042 6.92846 7.10065 7.44043 8.96621 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046755 B = 0.004290 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.720952 B = 6525.556071 C = 6719.519622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.538 5.538 3 C 0.065 3.935 4 C -0.089 4.089 5 C -0.108 4.108 6 C -0.065 4.065 7 C -0.063 4.063 8 C 0.034 3.966 9 C -0.540 4.540 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.961 3.039 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.110 4.110 18 C 0.077 3.923 19 N -0.635 5.635 20 H 0.441 0.559 21 C 0.669 3.331 22 O -0.601 6.601 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.162 0.838 27 H 0.147 0.853 28 H 0.065 0.935 29 H 0.073 0.927 30 H -0.005 1.005 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -6.015 -9.280 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.261 5.261 3 C -0.036 4.036 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.100 4.100 8 C -0.003 4.003 9 C -0.578 4.578 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.786 3.214 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.131 4.131 18 C -0.025 4.025 19 N -0.280 5.280 20 H 0.284 0.716 21 C 0.371 3.629 22 O -0.482 6.482 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.179 0.821 27 H 0.165 0.835 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.013 0.987 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.805 -6.797 -9.108 16.386 hybrid contribution 1.271 0.091 0.545 1.385 sum -10.534 -6.707 -8.563 15.141 Atomic orbital electron populations 1.22048 0.72916 1.05134 1.04845 1.45073 1.08381 1.03831 1.68769 1.18224 0.87800 0.89855 1.07700 1.20272 1.01252 0.87434 1.02030 1.21068 0.90836 1.00660 1.00190 1.19944 0.95843 0.93159 0.97715 1.20550 0.94760 0.96682 0.98028 1.18948 0.94788 0.94664 0.91908 1.21752 1.17847 1.25532 0.92704 0.91744 1.25933 0.99821 0.98632 0.95316 1.70108 1.43783 1.45613 0.97963 0.85507 0.79005 0.79136 0.77758 1.19800 1.21255 1.18620 1.20035 0.97593 0.91176 1.04266 1.18046 0.94761 0.83139 1.06570 1.42884 1.08304 1.06021 1.70833 0.71576 1.16100 0.81470 0.84540 0.80809 1.90999 1.77344 1.18248 1.61564 0.89333 0.89005 0.88490 0.82069 0.83547 0.91648 0.90797 0.98653 0.99268 0.92956 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 11.16 127.77 1.43 2.88 16 2 N -0.54 -13.47 3.19 -671.89 -2.14 -15.61 16 3 C 0.06 1.69 6.83 38.39 0.26 1.95 16 4 C -0.09 -2.03 10.02 22.34 0.22 -1.81 16 5 C -0.11 -2.90 9.68 22.29 0.22 -2.68 16 6 C -0.06 -2.06 5.13 -19.85 -0.10 -2.16 16 7 C -0.06 -2.34 5.28 29.85 0.16 -2.18 16 8 C 0.03 1.69 4.95 29.85 0.15 1.84 16 9 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 10 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 11 C 0.00 0.03 5.46 84.66 0.46 0.49 16 12 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 13 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 17 C -0.11 -3.28 9.71 22.34 0.22 -3.06 16 18 C 0.08 2.17 7.26 38.39 0.28 2.44 16 19 N -0.64 -16.93 6.15 -317.46 -1.95 -18.88 16 20 H 0.44 9.57 8.96 -92.71 -0.83 8.74 16 21 C 0.67 20.01 8.83 179.14 1.58 21.59 16 22 O -0.60 -21.22 17.53 -4.30 -0.08 -21.30 16 23 H 0.09 1.50 7.67 -2.39 -0.02 1.48 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.06 2.34 8.08 -2.38 -0.02 2.32 16 29 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 33 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -69.84 290.02 3.54 -66.30 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.29 Total: 9.83 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.10 Total: -9.82 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.81 Total: -90.04 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.08 Total: -21.30 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.84 3.54 -66.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.801 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds