Wall clock time and date at job start Mon Mar 30 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 C 1.50701 * 109.46852 * 120.00345 * 2 1 3 5 5 H 1.08002 * 120.00276 * 120.00541 * 4 2 1 6 6 C 1.37883 * 120.00078 * 299.99748 * 4 2 1 7 7 N 1.31516 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47187 * 90.00151 * 8 6 4 10 10 H 1.48497 * 109.47189 * 209.99810 * 8 6 4 11 11 H 1.48503 * 109.47063 * 330.00088 * 8 6 4 12 12 C 1.50697 * 109.47125 * 239.99825 * 2 1 3 13 13 C 1.38147 * 120.07961 * 300.00182 * 12 2 1 14 14 C 1.38397 * 120.28323 * 179.97438 * 13 12 2 15 15 C 1.38142 * 120.28507 * 0.02562 * 14 13 12 16 16 C 1.38621 * 119.85102 * 359.97438 * 15 14 13 17 17 N 1.39288 * 133.34500 * 179.97438 * 16 15 14 18 18 H 0.97010 * 125.81776 * 0.05779 * 17 16 15 19 19 C 1.34639 * 108.36880 * 180.02562 * 17 16 15 20 20 O 1.21677 * 125.15843 * 179.97438 * 19 17 16 21 21 N 1.34634 * 109.67904 * 0.02562 * 19 17 16 22 22 C 1.46506 * 125.81647 * 179.97438 * 21 19 17 23 23 C 1.38626 * 120.07211 * 120.29084 * 12 2 1 24 24 H 1.08997 * 109.46917 * 59.99929 * 1 2 3 25 25 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47201 * 300.00002 * 1 2 3 27 27 H 0.96995 * 119.99845 * 179.97438 * 7 6 4 28 28 H 1.08005 * 119.85641 * 0.02598 * 13 12 2 29 29 H 1.08000 * 119.85744 * 179.97438 * 14 13 12 30 30 H 1.08004 * 120.07360 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47060 * 0.03024 * 22 21 19 32 32 H 1.09004 * 109.47073 * 120.02513 * 22 21 19 33 33 H 1.09000 * 109.47212 * 240.02595 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4878 -2.5655 3.7121 12 6 2.0323 -0.7104 -1.2304 13 6 1.6996 -2.0330 -1.4506 14 6 2.1581 -2.6894 -2.5795 15 6 2.9530 -2.0278 -3.4954 16 6 3.2922 -0.7006 -3.2830 17 7 4.0562 0.2173 -3.9998 18 1 4.5096 0.0454 -4.8400 19 6 4.0579 1.3842 -3.3281 20 8 4.6336 2.3959 -3.6825 21 7 3.3267 1.2615 -2.2043 22 6 3.0937 2.3154 -1.2136 23 6 2.8344 -0.0400 -2.1409 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7081 1.1607 3.4844 28 1 1.0782 -2.5568 -0.7392 29 1 1.8941 -3.7235 -2.7446 30 1 3.3093 -2.5435 -4.3749 31 1 3.6059 3.2259 -1.5246 32 1 2.0240 2.5093 -1.1341 33 1 3.4779 1.9950 -0.2451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:05 Heat of formation + Delta-G solvation = 19.129261 kcal Electronic energy + Delta-G solvation = -17921.755553 eV Core-core repulsion = 15141.072097 eV Total energy + Delta-G solvation = -2780.683456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02593 -38.10503 -35.76509 -35.15185 -33.60513 -31.24209 -28.84768 -28.27392 -26.75358 -25.19352 -22.63995 -22.07630 -20.91952 -20.05926 -17.46197 -16.99101 -16.27302 -16.04440 -15.42175 -15.14982 -14.63501 -14.03082 -13.75547 -13.14306 -13.05816 -12.68671 -12.46658 -12.09280 -11.73509 -11.49908 -11.20720 -11.00455 -10.91622 -10.50617 -10.30807 -10.19000 -10.04405 -9.95385 -9.52454 -9.01631 -8.42433 -7.65933 -7.35291 -6.09252 -4.15902 1.77425 1.87865 2.72285 3.25342 3.26722 3.32918 3.35967 3.72775 4.23929 4.39839 4.97917 5.21189 5.32043 5.46356 5.65346 5.74791 5.88308 5.91973 6.00741 6.19932 6.33883 6.53991 6.71820 6.76597 6.87205 7.01090 7.08509 7.13586 7.25442 7.31038 7.63050 7.71926 7.84726 7.99927 8.28940 8.56523 8.86109 9.49009 10.96109 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.008037 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.878572 B = 3482.961654 C = 4048.379522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 H 0.047 0.953 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.013 4.013 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.135 4.135 16 C 0.078 3.922 17 N -0.647 5.647 18 H 0.427 0.573 19 C 0.676 3.324 20 O -0.577 6.577 21 N -0.530 5.530 22 C 0.099 3.901 23 C 0.081 3.919 24 H 0.007 0.993 25 H 0.031 0.969 26 H 0.087 0.913 27 H 0.261 0.739 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -4.047 -8.839 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 H 0.065 0.935 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.016 4.016 13 C -0.127 4.127 14 C -0.131 4.131 15 C -0.156 4.156 16 C -0.023 4.023 17 N -0.291 5.291 18 H 0.268 0.732 19 C 0.378 3.622 20 O -0.455 6.455 21 N -0.252 5.252 22 C -0.042 4.042 23 C -0.020 4.020 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.643 -3.064 -8.784 9.447 hybrid contribution 0.568 -0.596 0.503 0.964 sum 2.211 -3.659 -8.281 9.320 Atomic orbital electron populations 1.21796 0.97344 0.99555 1.00275 1.18143 0.93177 0.96342 0.88220 0.93523 1.21089 1.31292 1.12532 0.89637 0.92336 1.24935 0.94958 0.95009 0.98901 1.69867 1.36457 1.22854 1.23555 0.86589 0.78591 0.80180 0.82660 1.20736 1.21215 1.19827 1.19827 0.93023 0.93751 0.94975 1.20850 1.01098 0.93536 0.97214 1.20817 0.98379 0.99456 0.94486 1.19790 1.03542 0.90707 1.01608 1.18006 0.98942 0.92560 0.92837 1.42859 1.50523 1.10817 1.24947 0.73230 1.15939 0.81691 0.83492 0.81066 1.90996 1.51611 1.30381 1.72526 1.44852 1.47491 1.10992 1.21857 1.21928 1.02906 0.88543 0.90794 1.18040 1.02383 0.84537 0.97000 0.97377 0.95016 0.89484 0.92860 0.84953 0.85870 0.86293 0.89910 0.90331 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.78 37.16 0.33 -2.62 16 2 C 0.06 1.36 2.47 -92.92 -0.23 1.13 16 3 H 0.05 1.11 3.94 -51.93 -0.20 0.90 16 4 C -0.51 -12.84 8.24 -34.44 -0.28 -13.12 16 5 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.61 11.32 55.43 0.63 -22.98 16 8 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C -0.01 -0.26 4.74 -104.51 -0.50 -0.76 16 13 C -0.11 -1.91 8.71 -39.56 -0.34 -2.25 16 14 C -0.11 -1.63 10.03 -39.56 -0.40 -2.03 16 15 C -0.14 -1.92 10.07 -39.47 -0.40 -2.31 16 16 C 0.08 1.29 7.26 -83.80 -0.61 0.69 16 17 N -0.65 -10.08 6.15 -14.30 -0.09 -10.17 16 18 H 0.43 5.12 8.96 -40.82 -0.37 4.75 16 19 C 0.68 12.79 8.83 -87.17 -0.77 12.02 16 20 O -0.58 -12.15 17.53 5.21 0.09 -12.06 16 21 N -0.53 -10.16 3.19 -126.32 -0.40 -10.57 16 22 C 0.10 1.76 9.38 59.85 0.56 2.32 16 23 C 0.08 1.56 6.75 -83.80 -0.57 0.99 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.03 0.67 7.39 -51.93 -0.38 0.28 16 26 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 27 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.13 2.34 7.57 -52.48 -0.40 1.94 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.08 1.34 7.67 -51.93 -0.40 0.94 16 32 H 0.08 1.37 7.39 -51.93 -0.38 0.99 16 33 H 0.09 1.63 7.40 -51.93 -0.38 1.24 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -29.16 276.16 -7.56 -36.72 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.63 Total: 4.03 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.30 Total: -4.40 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.14 Total: -43.72 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.16 -7.56 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds