Wall clock time and date at job start Mon Mar 30 2020 04:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 C 1.50701 * 109.46852 * 120.00345 * 2 1 3 5 5 H 1.08002 * 120.00276 * 120.00541 * 4 2 1 6 6 C 1.37883 * 120.00078 * 299.99748 * 4 2 1 7 7 N 1.31516 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47187 * 90.00151 * 8 6 4 10 10 H 1.48497 * 109.47189 * 209.99810 * 8 6 4 11 11 H 1.48503 * 109.47063 * 330.00088 * 8 6 4 12 12 C 1.50697 * 109.47125 * 239.99825 * 2 1 3 13 13 C 1.38147 * 120.07961 * 300.00182 * 12 2 1 14 14 C 1.38397 * 120.28323 * 179.97438 * 13 12 2 15 15 C 1.38142 * 120.28507 * 0.02562 * 14 13 12 16 16 C 1.38621 * 119.85102 * 359.97438 * 15 14 13 17 17 N 1.39288 * 133.34500 * 179.97438 * 16 15 14 18 18 H 0.97010 * 125.81776 * 0.05779 * 17 16 15 19 19 C 1.34639 * 108.36880 * 180.02562 * 17 16 15 20 20 O 1.21677 * 125.15843 * 179.97438 * 19 17 16 21 21 N 1.34634 * 109.67904 * 0.02562 * 19 17 16 22 22 C 1.46506 * 125.81647 * 179.97438 * 21 19 17 23 23 C 1.38626 * 120.07211 * 120.29084 * 12 2 1 24 24 H 1.08997 * 109.46917 * 59.99929 * 1 2 3 25 25 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47201 * 300.00002 * 1 2 3 27 27 H 0.96995 * 119.99845 * 179.97438 * 7 6 4 28 28 H 1.08005 * 119.85641 * 0.02598 * 13 12 2 29 29 H 1.08000 * 119.85744 * 179.97438 * 14 13 12 30 30 H 1.08004 * 120.07360 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47060 * 0.03024 * 22 21 19 32 32 H 1.09004 * 109.47073 * 120.02513 * 22 21 19 33 33 H 1.09000 * 109.47212 * 240.02595 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4878 -2.5655 3.7121 12 6 2.0323 -0.7104 -1.2304 13 6 1.6996 -2.0330 -1.4506 14 6 2.1581 -2.6894 -2.5795 15 6 2.9530 -2.0278 -3.4954 16 6 3.2922 -0.7006 -3.2830 17 7 4.0562 0.2173 -3.9998 18 1 4.5096 0.0454 -4.8400 19 6 4.0579 1.3842 -3.3281 20 8 4.6336 2.3959 -3.6825 21 7 3.3267 1.2615 -2.2043 22 6 3.0937 2.3154 -1.2136 23 6 2.8344 -0.0400 -2.1409 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7081 1.1607 3.4844 28 1 1.0782 -2.5568 -0.7392 29 1 1.8941 -3.7235 -2.7446 30 1 3.3093 -2.5435 -4.3749 31 1 3.6059 3.2259 -1.5246 32 1 2.0240 2.5093 -1.1341 33 1 3.4779 1.9950 -0.2451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:04 Heat of formation + Delta-G solvation = 1.875272 kcal Electronic energy + Delta-G solvation = -17922.503743 eV Core-core repulsion = 15141.072097 eV Total energy + Delta-G solvation = -2781.431645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.40510 -39.52921 -37.29963 -36.58597 -35.24276 -32.96039 -30.28525 -29.65002 -28.23996 -27.13932 -24.10667 -23.45746 -22.35945 -21.61656 -18.82440 -18.51078 -18.00537 -17.51427 -16.90650 -16.53195 -16.37747 -15.51552 -15.11288 -14.80434 -14.53426 -14.21491 -13.94843 -13.55566 -13.25973 -13.11342 -12.83102 -12.80066 -12.59033 -12.19858 -11.99968 -11.76074 -11.60175 -11.34891 -11.18044 -10.85548 -10.36813 -9.01216 -8.75097 -8.04931 -6.16938 0.45641 0.56140 1.37939 1.43329 1.46438 1.54461 1.82767 2.40631 2.46375 2.95780 3.23588 3.70764 3.91534 4.17976 4.41147 4.44766 4.55475 4.57422 4.61715 4.75085 4.92935 5.00198 5.10673 5.28833 5.35499 5.44714 5.55566 5.66201 5.75045 5.92216 5.95411 6.10675 6.12940 6.37859 6.42555 6.90495 7.18156 7.49955 8.98652 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.008037 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.878572 B = 3482.961654 C = 4048.379522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.057 3.943 3 H 0.031 0.969 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.283 1.283 10 H -0.285 1.285 11 H -0.267 1.267 12 C -0.042 4.042 13 C -0.117 4.117 14 C -0.097 4.097 15 C -0.114 4.114 16 C 0.077 3.923 17 N -0.625 5.625 18 H 0.445 0.555 19 C 0.669 3.331 20 O -0.605 6.605 21 N -0.539 5.539 22 C 0.105 3.895 23 C 0.051 3.949 24 H 0.018 0.982 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.260 0.740 28 H 0.127 0.873 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -6.339 -10.511 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.039 3.961 3 H 0.049 0.951 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.045 4.045 13 C -0.137 4.137 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.024 4.024 17 N -0.272 5.272 18 H 0.289 0.711 19 C 0.370 3.630 20 O -0.486 6.486 21 N -0.260 5.260 22 C -0.036 4.036 23 C -0.049 4.049 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.174 -5.394 -10.480 11.986 hybrid contribution 0.394 0.052 0.965 1.043 sum 2.568 -5.342 -9.516 11.210 Atomic orbital electron populations 1.21630 0.97383 0.99506 0.99365 1.18013 0.93202 0.95733 0.89173 0.95109 1.21351 1.30751 1.12240 0.90866 0.93000 1.25586 0.95355 0.95705 1.01343 1.69985 1.37511 1.23966 1.23826 0.85743 0.77813 0.79444 0.79783 1.20916 1.21113 1.19162 1.19613 0.95187 0.94972 0.94687 1.20960 1.01402 0.92709 0.98611 1.21233 0.96737 1.01054 0.92618 1.20322 1.01384 0.89310 1.02422 1.18261 0.98795 0.93427 0.91933 1.42657 1.49881 1.09469 1.25158 0.71058 1.16056 0.81668 0.84034 0.81235 1.90967 1.52820 1.31578 1.73225 1.44972 1.47590 1.11363 1.22076 1.21812 1.02722 0.88945 0.90092 1.18244 1.03436 0.84846 0.98397 0.96290 0.94513 0.92196 0.93064 0.85515 0.81686 0.81655 0.88707 0.90648 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.78 71.98 0.63 -4.89 16 2 C 0.06 2.67 2.47 -12.29 -0.03 2.64 16 3 H 0.03 1.53 3.94 -2.39 -0.01 1.52 16 4 C -0.51 -26.43 8.24 25.60 0.21 -26.22 16 5 H 0.05 2.67 7.60 -2.91 -0.02 2.65 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -49.81 11.32 21.45 0.24 -49.57 16 8 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 12 C -0.04 -1.67 4.74 -19.79 -0.09 -1.76 16 13 C -0.12 -3.94 8.71 22.29 0.19 -3.74 16 14 C -0.10 -2.39 10.03 22.28 0.22 -2.16 16 15 C -0.11 -2.64 10.07 22.34 0.22 -2.42 16 16 C 0.08 2.34 7.26 38.39 0.28 2.62 16 17 N -0.63 -17.94 6.15 -317.46 -1.95 -19.90 16 18 H 0.45 9.22 8.96 -92.70 -0.83 8.38 16 19 C 0.67 24.75 8.83 179.14 1.58 26.33 16 20 O -0.60 -25.27 17.53 -4.28 -0.07 -25.35 16 21 N -0.54 -20.70 3.19 -671.87 -2.14 -22.84 16 22 C 0.11 3.89 9.38 127.77 1.20 5.09 16 23 C 0.05 1.91 6.75 38.39 0.26 2.17 16 24 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.04 1.57 7.39 -2.38 -0.02 1.55 16 26 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 27 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.13 4.32 7.57 -2.91 -0.02 4.30 16 29 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.09 3.18 7.67 -2.39 -0.02 3.16 16 32 H 0.07 2.77 7.39 -2.38 -0.02 2.75 16 33 H 0.07 2.77 7.40 -2.39 -0.02 2.75 16 Total: -1.00 -63.72 276.16 3.54 -60.17 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.31 Total: 14.41 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.13 Total: -0.90 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -3.85 Total: -92.31 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.35 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -63.72 3.54 -60.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.047 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds