Wall clock time and date at job start Mon Mar 30 2020 03:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38135 * 120.03870 * 2 1 4 4 C 1.38261 * 120.07385 * 180.25795 * 3 2 1 5 5 C 1.38317 * 120.13921 * 359.44617 * 4 3 2 6 6 C 1.38087 * 120.06607 * 0.55440 * 5 4 3 7 7 C 1.38854 * 120.03640 * 179.97438 * 2 1 3 8 8 N 1.39910 * 120.07110 * 359.97438 * 7 2 1 9 9 C 1.47053 * 125.40866 * 89.71905 * 8 7 2 10 10 C 1.54103 * 103.86229 * 179.87346 * 9 8 7 11 11 N 1.47052 * 103.86370 * 0.37619 * 10 9 8 12 12 C 1.37160 * 125.41288 * 179.75484 * 11 10 9 13 13 H 1.08004 * 120.00557 * 174.26327 * 12 11 10 14 14 C 1.38881 * 120.00152 * 354.25969 * 12 11 10 15 15 N 1.31473 * 119.99873 * 6.96546 * 14 12 11 16 16 Si 1.86804 * 120.00250 * 186.95903 * 14 12 11 17 17 H 1.48500 * 109.47007 * 94.99242 * 16 14 12 18 18 H 1.48505 * 109.46946 * 214.98606 * 16 14 12 19 19 H 1.48498 * 109.47226 * 334.98778 * 16 14 12 20 20 C 1.33948 * 109.17997 * 359.75624 * 11 10 9 21 21 O 1.21590 * 123.04536 * 180.02562 * 20 11 10 22 22 H 1.08994 * 109.47479 * 89.99386 * 1 2 3 23 23 H 1.08998 * 109.46968 * 210.00220 * 1 2 3 24 24 H 1.09004 * 109.46475 * 329.99936 * 1 2 3 25 25 H 1.08000 * 119.96093 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.93024 * 179.70096 * 4 3 2 27 27 H 1.07995 * 119.96358 * 180.27755 * 5 4 3 28 28 H 1.08005 * 120.03013 * 179.70534 * 6 5 4 29 29 H 1.09000 * 110.55159 * 298.60031 * 9 8 7 30 30 H 1.08995 * 110.54502 * 61.40866 * 9 8 7 31 31 H 1.08999 * 110.76256 * 241.67884 * 10 9 8 32 32 H 1.09001 * 110.46389 * 118.92626 * 10 9 8 33 33 H 0.97001 * 119.99829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1967 -0.0054 5 6 4.2764 0.0010 0.0008 6 6 3.5910 -1.1978 0.0008 7 6 2.2020 -1.2021 0.0005 8 7 1.5048 -2.4150 0.0016 9 6 1.0746 -3.1516 -1.1962 10 6 0.3657 -4.3969 -0.6292 11 7 0.4636 -4.2251 0.8280 12 6 -0.0356 -5.0926 1.7658 13 1 0.1657 -4.9290 2.8142 14 6 -0.8001 -6.1814 1.3674 15 7 -0.9317 -6.4597 0.0892 16 14 -1.6412 -7.2508 2.6475 17 1 -3.0397 -6.7885 2.8370 18 1 -1.6447 -8.6629 2.1879 19 1 -0.9080 -7.1510 3.9350 20 6 1.1178 -3.0869 1.0940 21 8 1.3407 -2.6990 2.2245 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3632 0.8900 0.5139 25 1 1.6585 2.1311 -0.0004 26 1 4.1194 2.1330 -0.0103 27 1 5.3563 0.0050 0.0011 28 1 4.1345 -2.1312 0.0008 29 1 0.3829 -2.5509 -1.7869 30 1 1.9367 -3.4442 -1.7955 31 1 0.8758 -5.3079 -0.9422 32 1 -0.6780 -4.4171 -0.9427 33 1 -1.4660 -7.2200 -0.1891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259882286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:47 Heat of formation + Delta-G solvation = 25.950783 kcal Electronic energy + Delta-G solvation = -17808.337598 eV Core-core repulsion = 15027.949946 eV Total energy + Delta-G solvation = -2780.387653 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36638 -38.56368 -35.03963 -34.42060 -32.45341 -31.71701 -29.65107 -27.85541 -26.47301 -25.14173 -22.64155 -21.69984 -21.21838 -19.34180 -17.41419 -16.55379 -15.93851 -15.36657 -15.26596 -14.53929 -14.30268 -14.04902 -13.48001 -13.17939 -12.89971 -12.78884 -12.58271 -12.03990 -11.73345 -11.70352 -11.57641 -11.30977 -11.00052 -10.89466 -10.79591 -10.34040 -10.21022 -9.09747 -8.95812 -8.55760 -8.26661 -8.18215 -7.74126 -6.30387 -3.77103 1.53141 1.60886 3.20140 3.26224 3.30397 3.53991 3.93958 4.23956 4.25785 5.08059 5.10795 5.21507 5.24555 5.33451 5.47395 5.52022 5.66317 5.80826 5.84371 5.90402 5.94812 6.07121 6.14780 6.46894 6.58765 6.67104 6.69735 6.93364 6.98470 7.06473 7.23950 7.54739 7.88323 8.24780 8.62690 9.23053 9.41385 10.16400 10.79863 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042993 B = 0.006109 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.118241 B = 4582.555649 C = 4627.305646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.081 4.081 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.193 3.807 8 N -0.611 5.611 9 C 0.088 3.912 10 C 0.133 3.867 11 N -0.467 5.467 12 C -0.276 4.276 13 H 0.103 0.897 14 C 0.024 3.976 15 N -0.900 5.900 16 Si 0.933 3.067 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.654 3.346 21 O -0.617 6.617 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 9.902 -6.141 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.131 4.131 7 C 0.102 3.898 8 N -0.348 5.348 9 C -0.035 4.035 10 C 0.009 3.991 11 N -0.190 5.190 12 C -0.403 4.403 13 H 0.121 0.879 14 C -0.177 4.177 15 N -0.542 5.542 16 Si 0.760 3.240 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 C 0.358 3.642 21 O -0.499 6.499 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.480 9.866 -5.553 12.176 hybrid contribution -0.403 -0.686 0.317 0.857 sum 4.077 9.180 -5.235 11.327 Atomic orbital electron populations 1.20698 0.91011 1.03166 1.01832 1.20266 0.96639 0.92482 0.98851 1.20875 0.94164 0.96890 1.01770 1.21067 0.94187 0.97824 1.01124 1.20949 0.99565 0.92057 1.01523 1.21443 0.93663 0.98490 0.99509 1.16924 0.89522 0.83723 0.99601 1.44260 1.61459 1.21779 1.07267 1.22681 0.98585 0.93818 0.88415 1.22130 1.01142 0.94086 0.81763 1.42730 1.52092 1.18590 1.05574 1.19441 1.28273 1.03678 0.88937 0.87931 1.25178 0.97620 0.97802 0.97105 1.69877 1.40940 1.29386 1.13977 0.85796 0.79489 0.78551 0.80193 1.20499 1.20960 1.19492 1.15725 0.82747 0.82189 0.83587 1.90757 1.65548 1.72700 1.20891 0.91505 0.90851 0.91881 0.86091 0.86257 0.86100 0.86006 0.91747 0.91772 0.90218 0.89844 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.77 36.01 0.35 -1.40 16 2 C -0.08 -1.36 5.90 -104.43 -0.62 -1.98 16 3 C -0.12 -1.65 9.70 -39.61 -0.38 -2.03 16 4 C -0.12 -1.59 10.04 -39.54 -0.40 -1.99 16 5 C -0.12 -1.68 10.04 -39.61 -0.40 -2.08 16 6 C -0.11 -1.88 9.97 -39.39 -0.39 -2.27 16 7 C 0.19 3.68 5.42 -83.70 -0.45 3.23 16 8 N -0.61 -13.02 2.07 -118.25 -0.24 -13.27 16 9 C 0.09 1.63 7.62 -3.16 -0.02 1.60 16 10 C 0.13 2.99 5.66 -3.17 -0.02 2.97 16 11 N -0.47 -12.47 3.07 -119.61 -0.37 -12.83 16 12 C -0.28 -7.83 9.92 -14.93 -0.15 -7.98 16 13 H 0.10 3.02 7.68 -52.48 -0.40 2.62 16 14 C 0.02 0.63 5.48 -17.47 -0.10 0.53 16 15 N -0.90 -23.75 10.39 55.49 0.58 -23.17 16 16 Si 0.93 20.94 29.56 -169.99 -5.02 15.91 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.65 17.20 7.63 -88.39 -0.67 16.52 16 21 O -0.62 -18.43 17.14 5.29 0.09 -18.34 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 1.43 6.98 -51.93 -0.36 1.07 16 24 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.85 7.63 -51.93 -0.40 1.45 16 32 H 0.08 1.94 7.37 -51.93 -0.38 1.55 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -32.24 283.40 -8.01 -40.24 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.06 Total: 2.06 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -3.25 Total: 5.12 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.04 Total: -49.27 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.09 Total: -18.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.24 -8.01 -40.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.195 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds