Wall clock time and date at job start Mon Mar 30 2020 03:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38135 * 120.03870 * 2 1 4 4 C 1.38261 * 120.07385 * 180.25795 * 3 2 1 5 5 C 1.38317 * 120.13921 * 359.44617 * 4 3 2 6 6 C 1.38087 * 120.06607 * 0.55440 * 5 4 3 7 7 C 1.38854 * 120.03640 * 179.97438 * 2 1 3 8 8 N 1.39910 * 120.07110 * 359.97438 * 7 2 1 9 9 C 1.47053 * 125.40866 * 89.71905 * 8 7 2 10 10 C 1.54103 * 103.86229 * 179.87346 * 9 8 7 11 11 N 1.47052 * 103.86370 * 0.37619 * 10 9 8 12 12 C 1.37160 * 125.41288 * 179.75484 * 11 10 9 13 13 H 1.08004 * 120.00557 * 174.26327 * 12 11 10 14 14 C 1.38881 * 120.00152 * 354.25969 * 12 11 10 15 15 N 1.31473 * 119.99873 * 6.96546 * 14 12 11 16 16 Si 1.86804 * 120.00250 * 186.95903 * 14 12 11 17 17 H 1.48500 * 109.47007 * 94.99242 * 16 14 12 18 18 H 1.48505 * 109.46946 * 214.98606 * 16 14 12 19 19 H 1.48498 * 109.47226 * 334.98778 * 16 14 12 20 20 C 1.33948 * 109.17997 * 359.75624 * 11 10 9 21 21 O 1.21590 * 123.04536 * 180.02562 * 20 11 10 22 22 H 1.08994 * 109.47479 * 89.99386 * 1 2 3 23 23 H 1.08998 * 109.46968 * 210.00220 * 1 2 3 24 24 H 1.09004 * 109.46475 * 329.99936 * 1 2 3 25 25 H 1.08000 * 119.96093 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.93024 * 179.70096 * 4 3 2 27 27 H 1.07995 * 119.96358 * 180.27755 * 5 4 3 28 28 H 1.08005 * 120.03013 * 179.70534 * 6 5 4 29 29 H 1.09000 * 110.55159 * 298.60031 * 9 8 7 30 30 H 1.08995 * 110.54502 * 61.40866 * 9 8 7 31 31 H 1.08999 * 110.76256 * 241.67884 * 10 9 8 32 32 H 1.09001 * 110.46389 * 118.92626 * 10 9 8 33 33 H 0.97001 * 119.99829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1967 -0.0054 5 6 4.2764 0.0010 0.0008 6 6 3.5910 -1.1978 0.0008 7 6 2.2020 -1.2021 0.0005 8 7 1.5048 -2.4150 0.0016 9 6 1.0746 -3.1516 -1.1962 10 6 0.3657 -4.3969 -0.6292 11 7 0.4636 -4.2251 0.8280 12 6 -0.0356 -5.0926 1.7658 13 1 0.1657 -4.9290 2.8142 14 6 -0.8001 -6.1814 1.3674 15 7 -0.9317 -6.4597 0.0892 16 14 -1.6412 -7.2508 2.6475 17 1 -3.0397 -6.7885 2.8370 18 1 -1.6447 -8.6629 2.1879 19 1 -0.9080 -7.1510 3.9350 20 6 1.1178 -3.0869 1.0940 21 8 1.3407 -2.6990 2.2245 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3632 0.8900 0.5139 25 1 1.6585 2.1311 -0.0004 26 1 4.1194 2.1330 -0.0103 27 1 5.3563 0.0050 0.0011 28 1 4.1345 -2.1312 0.0008 29 1 0.3829 -2.5509 -1.7869 30 1 1.9367 -3.4442 -1.7955 31 1 0.8758 -5.3079 -0.9422 32 1 -0.6780 -4.4171 -0.9427 33 1 -1.4660 -7.2200 -0.1891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259882286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:47 Heat of formation + Delta-G solvation = 7.188196 kcal Electronic energy + Delta-G solvation = -17809.151205 eV Core-core repulsion = 15027.949946 eV Total energy + Delta-G solvation = -2781.201259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07900 -39.91793 -37.10138 -36.15839 -33.85562 -33.37182 -31.20182 -29.46262 -27.80008 -27.07742 -24.08590 -23.36838 -22.52938 -20.93325 -19.41826 -18.07841 -17.53365 -17.29571 -16.59283 -16.10565 -15.96952 -15.55233 -14.93497 -14.77027 -14.56314 -14.34603 -14.03649 -13.51032 -13.46193 -13.25432 -12.97077 -12.87530 -12.70785 -12.34559 -12.18087 -12.11554 -12.04859 -11.11024 -11.00010 -10.09716 -9.74631 -9.56477 -9.51209 -8.35486 -5.90578 0.32976 0.45577 1.39838 1.40947 1.53146 1.88181 2.26011 2.37895 2.78358 3.14949 3.52068 3.81630 3.95700 3.96633 4.20056 4.27224 4.40213 4.46050 4.61404 4.63430 4.73149 4.79735 4.86109 5.00178 5.17440 5.26437 5.37182 5.40820 5.48864 5.56995 5.70789 5.90582 6.16685 6.35547 6.64054 7.18986 7.39374 8.14421 8.73033 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042993 B = 0.006109 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.118241 B = 4582.555649 C = 4627.305646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.145 3.855 8 N -0.600 5.600 9 C 0.097 3.903 10 C 0.139 3.861 11 N -0.485 5.485 12 C -0.321 4.321 13 H 0.075 0.925 14 C -0.005 4.005 15 N -0.908 5.908 16 Si 0.998 3.002 17 H -0.271 1.271 18 H -0.268 1.268 19 H -0.275 1.275 20 C 0.644 3.356 21 O -0.667 6.667 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.084 0.916 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.153 0.847 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 11.567 -7.336 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.128 4.128 5 C -0.136 4.136 6 C -0.150 4.150 7 C 0.055 3.945 8 N -0.335 5.335 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.208 5.208 12 C -0.448 4.448 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.547 5.547 16 Si 0.822 3.178 17 H -0.196 1.196 18 H -0.193 1.193 19 H -0.200 1.200 20 C 0.347 3.653 21 O -0.553 6.553 22 H 0.104 0.896 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.172 0.828 26 H 0.180 0.820 27 H 0.171 0.829 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.994 11.545 -6.826 14.312 hybrid contribution -0.509 -1.132 0.645 1.399 sum 4.485 10.414 -6.180 12.913 Atomic orbital electron populations 1.20653 0.90953 1.01858 1.02694 1.20468 0.97029 0.92916 0.99697 1.21278 0.95002 0.96853 1.00156 1.21588 0.93916 0.99091 0.98232 1.21340 1.01218 0.91169 0.99851 1.21535 0.93010 0.99736 1.00750 1.17377 0.90529 0.83323 1.03233 1.44153 1.60781 1.22333 1.06275 1.22761 0.99881 0.92138 0.87726 1.22060 1.00845 0.95717 0.79808 1.42935 1.52200 1.18704 1.07002 1.19404 1.31123 1.05712 0.88567 0.90659 1.25980 0.97057 0.98116 0.99363 1.69966 1.40224 1.29527 1.15027 0.84843 0.78298 0.77250 0.77453 1.19611 1.19262 1.19966 1.16065 0.82627 0.82399 0.84166 1.90673 1.67437 1.73949 1.23268 0.89555 0.95439 0.89759 0.82820 0.81987 0.82921 0.86950 0.88894 0.88940 0.91412 0.91003 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.28 9.77 71.24 0.70 -2.58 16 2 C -0.10 -3.24 5.90 -19.74 -0.12 -3.36 16 3 C -0.11 -2.79 9.70 22.25 0.22 -2.58 16 4 C -0.11 -2.35 10.04 22.29 0.22 -2.12 16 5 C -0.12 -2.89 10.04 22.25 0.22 -2.66 16 6 C -0.13 -4.35 9.97 22.39 0.22 -4.12 16 7 C 0.15 5.54 5.42 38.16 0.21 5.74 16 8 N -0.60 -26.28 2.07 -646.75 -1.34 -27.61 16 9 C 0.10 3.58 7.62 86.65 0.66 4.24 16 10 C 0.14 6.45 5.66 86.65 0.49 6.94 16 11 N -0.49 -27.24 3.07 -651.07 -2.00 -29.25 16 12 C -0.32 -19.14 9.92 84.01 0.83 -18.30 16 13 H 0.08 4.76 7.68 -2.91 -0.02 4.74 16 14 C -0.01 -0.27 5.48 84.90 0.47 0.19 16 15 N -0.91 -48.26 10.39 21.65 0.22 -48.03 16 16 Si 1.00 43.35 29.56 68.60 2.03 45.38 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.64 35.69 7.63 179.57 1.37 37.06 16 21 O -0.67 -42.36 17.14 -4.00 -0.07 -42.43 16 22 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.03 1.09 6.98 -2.39 -0.02 1.08 16 24 H 0.08 2.19 8.09 -2.38 -0.02 2.17 16 25 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 26 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.11 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.07 3.24 7.63 -2.39 -0.02 3.22 16 32 H 0.07 3.43 7.37 -2.39 -0.02 3.41 16 33 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -74.49 283.40 5.44 -69.05 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.10 Total: 14.45 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 5.49 Total: 18.44 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.11 Total: -104.89 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.07 Total: -42.43 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -74.49 5.44 -69.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.241 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds