Wall clock time and date at job start Mon Mar 30 2020 04:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34643 * 125.82092 * 2 1 4 4 O 1.21692 * 125.15796 * 0.03618 * 3 2 1 5 5 N 1.34632 * 109.68085 * 179.97438 * 3 2 1 6 6 H 0.96992 * 125.82113 * 180.02562 * 5 3 2 7 7 C 1.39289 * 108.35999 * 0.02562 * 5 3 2 8 8 C 1.38666 * 133.33410 * 179.97438 * 7 5 3 9 9 C 1.38107 * 119.84567 * 179.73073 * 8 7 5 10 10 C 1.38438 * 120.28836 * 0.55508 * 9 8 7 11 11 C 1.38110 * 120.28086 * 359.45986 * 10 9 8 12 12 C 1.50696 * 120.07925 * 180.23681 * 11 10 9 13 13 C 1.52995 * 109.47095 * 265.00369 * 12 11 10 14 14 C 1.50701 * 109.47068 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99959 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47402 * 59.99597 * 18 16 14 20 20 H 1.48495 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46674 * 299.99528 * 18 16 14 22 22 C 1.38665 * 119.84512 * 0.26228 * 11 10 9 23 23 H 1.09002 * 109.47073 * 269.99879 * 1 2 3 24 24 H 1.08996 * 109.47024 * 30.00103 * 1 2 3 25 25 H 1.08997 * 109.46884 * 149.99728 * 1 2 3 26 26 H 1.07997 * 120.07754 * 0.02562 * 8 7 5 27 27 H 1.08003 * 119.85258 * 180.26617 * 9 8 7 28 28 H 1.08002 * 119.86424 * 179.74626 * 10 9 8 29 29 H 1.09010 * 109.46571 * 24.99989 * 12 11 10 30 30 H 1.08994 * 109.47179 * 144.99667 * 12 11 10 31 31 H 1.09000 * 109.47158 * 299.99828 * 13 12 11 32 32 H 1.09006 * 109.47325 * 59.99828 * 13 12 11 33 33 H 0.97003 * 120.00121 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2530 1.0918 0.0000 4 8 1.8564 2.2422 0.0006 5 7 3.5463 0.7175 0.0006 6 1 4.3102 1.3152 0.0010 7 6 3.6002 -0.6743 0.0004 8 6 4.6449 -1.5862 0.0003 9 6 4.3751 -2.9406 0.0057 10 6 3.0663 -3.3918 -0.0004 11 6 2.0192 -2.4912 -0.0006 12 6 0.5963 -2.9874 -0.0019 13 6 0.0743 -3.0360 -1.4392 14 6 -1.3484 -3.5328 -1.4405 15 1 -1.8319 -3.7887 -0.5093 16 6 -2.0326 -3.6616 -2.6306 17 7 -1.4438 -3.3505 -3.7646 18 14 -3.7964 -4.2767 -2.6321 19 1 -4.6422 -3.3569 -1.8298 20 1 -4.3030 -4.3240 -4.0272 21 1 -3.8464 -5.6379 -2.0404 22 6 2.2803 -1.1294 -0.0003 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 5.6672 -1.2380 0.0008 27 1 5.1887 -3.6509 0.0100 28 1 2.8631 -4.4525 -0.0002 29 1 0.5596 -3.9868 0.4320 30 1 -0.0244 -2.3125 0.5875 31 1 0.1110 -2.0367 -1.8731 32 1 0.6950 -3.7110 -2.0286 33 1 -1.9252 -3.4407 -4.6019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259883128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:41 Heat of formation + Delta-G solvation = 12.066907 kcal Electronic energy + Delta-G solvation = -17564.108786 eV Core-core repulsion = 14783.119083 eV Total energy + Delta-G solvation = -2780.989703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.22432 -38.27758 -35.81165 -35.35221 -33.51250 -31.82518 -29.27488 -28.76785 -26.99626 -24.83378 -22.49799 -22.11142 -21.17075 -20.30252 -17.65583 -17.21380 -16.39288 -16.18453 -15.63887 -15.31083 -14.57145 -14.53244 -14.00749 -13.30761 -13.24129 -12.90599 -12.82464 -12.30385 -12.01929 -11.50026 -11.45970 -11.06874 -10.94040 -10.57733 -10.51603 -10.34590 -10.16231 -9.95045 -9.62663 -9.19465 -8.42445 -7.95598 -7.55782 -6.06928 -4.11597 1.45887 1.61084 2.56367 3.13058 3.29089 3.34681 3.36107 3.54324 3.94672 4.39969 4.73544 5.14823 5.17616 5.28694 5.41166 5.44191 5.60572 5.71596 5.81856 5.98829 6.14762 6.20276 6.26859 6.50292 6.54783 6.71503 6.80983 6.87972 6.97931 7.08924 7.52738 7.58722 7.67145 7.91609 8.29797 8.42311 8.95351 9.53730 11.03499 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006692 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.953949 B = 4183.080890 C = 4922.528600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.529 5.529 3 C 0.677 3.323 4 O -0.569 6.569 5 N -0.645 5.645 6 H 0.429 0.571 7 C 0.082 3.918 8 C -0.124 4.124 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.042 4.042 12 C -0.087 4.087 13 C 0.029 3.971 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.093 3.907 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 1.930 8.003 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.250 5.250 3 C 0.379 3.621 4 O -0.446 6.446 5 N -0.291 5.291 6 H 0.270 0.730 7 C -0.020 4.020 8 C -0.145 4.145 9 C -0.128 4.128 10 C -0.134 4.134 11 C -0.045 4.045 12 C -0.124 4.124 13 C -0.008 4.008 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.009 4.009 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.239 2.758 7.805 13.167 hybrid contribution -0.574 -0.018 -0.208 0.610 sum 9.666 2.740 7.597 12.596 Atomic orbital electron populations 1.22256 0.74186 1.06487 1.03051 1.44923 1.07584 1.04227 1.68251 1.15973 0.80833 0.84675 0.80660 1.91022 1.76720 1.17120 1.59748 1.42888 1.08257 1.05820 1.72088 0.72981 1.18006 0.94413 0.83077 1.06466 1.19894 0.96450 0.91805 1.06387 1.20788 0.96820 0.94114 1.01105 1.20836 0.91311 0.99508 1.01728 1.19435 0.98279 0.88545 0.98218 1.20981 0.88918 1.00453 1.02065 1.19144 0.95672 0.97474 0.88539 1.21178 0.97823 1.44742 0.92836 0.92506 1.25013 0.98171 0.95358 0.95634 1.69956 1.37199 1.48083 0.97754 0.86665 0.84892 0.79466 0.77037 1.20176 1.21296 1.20185 1.17926 0.87690 0.89087 1.06150 0.91773 0.90032 0.86348 0.85818 0.85405 0.85054 0.91410 0.91907 0.96370 0.96068 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.77 59.85 0.58 1.96 16 2 N -0.53 -9.51 3.19 -126.33 -0.40 -9.91 16 3 C 0.68 12.21 8.83 -87.17 -0.77 11.44 16 4 O -0.57 -11.69 17.77 5.20 0.09 -11.60 16 5 N -0.65 -9.30 6.15 -14.30 -0.09 -9.38 16 6 H 0.43 4.67 8.96 -40.82 -0.37 4.30 16 7 C 0.08 1.23 7.26 -83.80 -0.61 0.62 16 8 C -0.12 -1.51 10.07 -39.47 -0.40 -1.91 16 9 C -0.11 -1.31 10.03 -39.56 -0.40 -1.71 16 10 C -0.11 -1.65 9.67 -39.55 -0.38 -2.03 16 11 C -0.04 -0.72 5.14 -104.51 -0.54 -1.25 16 12 C -0.09 -1.65 4.58 -27.89 -0.13 -1.78 16 13 C 0.03 0.69 4.27 -27.88 -0.12 0.57 16 14 C -0.53 -13.96 9.11 -34.44 -0.31 -14.27 16 15 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.09 1.60 6.74 -83.80 -0.57 1.04 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 25 H 0.12 2.25 3.90 -51.93 -0.20 2.05 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.07 1.22 8.05 -51.92 -0.42 0.81 16 30 H 0.06 1.16 5.97 -51.93 -0.31 0.85 16 31 H 0.02 0.47 6.79 -51.93 -0.35 0.12 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -31.69 280.38 -7.91 -39.60 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.72 Total: 2.18 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.73 Total: -5.77 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.25 Total: -44.47 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.69 -7.91 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.666 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds