Wall clock time and date at job start Mon Mar 30 2020 04:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.75597 * 2 1 4 4 C 1.54798 * 110.85262 * 123.71017 * 2 1 3 5 5 N 1.48309 * 101.80082 * 93.98114 * 4 2 1 6 6 N 1.36330 * 107.75163 * 26.67543 * 5 4 2 7 7 C 1.39943 * 123.52548 * 161.32335 * 6 5 4 8 8 C 1.39286 * 119.94697 * 226.74587 * 7 6 5 9 9 C 1.38488 * 120.42717 * 180.02562 * 8 7 6 10 10 C 1.37683 * 120.32144 * 0.02562 * 9 8 7 11 11 C 1.40729 * 119.88734 * 359.97438 * 10 9 8 12 12 C 1.41413 * 120.21225 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99888 * 151.34069 * 12 11 10 14 14 C 1.39934 * 119.99844 * 331.34098 * 12 11 10 15 15 N 1.30823 * 120.00177 * 342.66415 * 14 12 11 16 16 Si 1.86798 * 119.99716 * 162.66006 * 14 12 11 17 17 H 1.48504 * 109.46943 * 60.00538 * 16 14 12 18 18 H 1.48494 * 109.47169 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47448 * 300.00264 * 16 14 12 20 20 C 1.38238 * 119.94479 * 46.47455 * 7 6 5 21 21 C 1.34594 * 112.94872 * 341.06243 * 6 5 4 22 22 O 1.21287 * 126.03583 * 181.88711 * 21 6 5 23 23 H 1.09004 * 109.46834 * 182.02842 * 1 2 3 24 24 H 1.08992 * 109.47145 * 302.02731 * 1 2 3 25 25 H 1.08994 * 109.47031 * 62.03315 * 1 2 3 26 26 H 1.09005 * 110.94867 * 212.33441 * 4 2 1 27 27 H 1.09004 * 110.94412 * 336.00116 * 4 2 1 28 28 H 1.00904 * 111.16562 * 264.84123 * 5 4 2 29 29 H 1.08005 * 119.78837 * 0.02562 * 8 7 6 30 30 H 1.08007 * 119.83868 * 179.97438 * 9 8 7 31 31 H 1.08004 * 120.05536 * 180.02562 * 10 9 8 32 32 H 0.96998 * 120.00226 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.16384 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0810 -0.8028 1.2034 5 7 2.2832 -2.1450 0.6055 6 7 2.4944 -1.9772 -0.7308 7 6 3.0849 -2.9479 -1.5479 8 6 4.0934 -2.5873 -2.4383 9 6 4.6843 -3.5396 -3.2518 10 6 4.2803 -4.8543 -3.1894 11 6 3.2625 -5.2335 -2.2946 12 6 2.8426 -6.5820 -2.2245 13 1 2.4451 -6.9765 -1.3010 14 6 2.9422 -7.4053 -3.3516 15 7 3.0932 -6.8748 -4.5379 16 14 2.8597 -9.2618 -3.1623 17 1 1.5581 -9.6401 -2.5556 18 1 2.9879 -9.9016 -4.4962 19 1 3.9666 -9.7197 -2.2846 20 6 2.6702 -4.2640 -1.4659 21 6 2.0704 -0.7826 -1.1832 22 8 2.1123 -0.3993 -2.3332 23 1 -0.3633 -1.0271 0.0364 24 1 -0.3633 0.5450 0.8712 25 1 -0.3633 0.4819 -0.9076 26 1 3.0236 -0.3821 1.5538 27 1 1.3506 -0.8442 2.0114 28 1 1.4875 -2.7423 0.7737 29 1 4.4168 -1.5583 -2.4947 30 1 5.4652 -3.2494 -3.9392 31 1 4.7444 -5.5936 -3.8256 32 1 3.1626 -7.4455 -5.3191 33 1 1.8917 -4.5455 -0.7723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:29 Heat of formation + Delta-G solvation = 20.669085 kcal Electronic energy + Delta-G solvation = -17431.472904 eV Core-core repulsion = 14650.856219 eV Total energy + Delta-G solvation = -2780.616684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93354 -37.40467 -36.76420 -34.17336 -33.00653 -30.38668 -29.86586 -28.00307 -26.20336 -25.22595 -22.86898 -21.30702 -20.45418 -19.61799 -18.01035 -16.73645 -16.08553 -15.46882 -15.20142 -14.68051 -14.48199 -14.04946 -13.76568 -13.33613 -12.97051 -12.84695 -12.42234 -12.30817 -11.95834 -11.68665 -11.30251 -11.20111 -11.18353 -10.93926 -10.54738 -10.16602 -10.11922 -9.56958 -9.18469 -9.17924 -8.36741 -7.49844 -6.97165 -6.75602 -4.39016 2.47026 2.80044 2.97248 3.07412 3.09780 3.10168 3.24798 3.93559 4.13565 4.54100 4.58673 4.64611 4.80667 5.20134 5.37796 5.44675 5.60932 5.65158 5.76084 5.96980 6.22887 6.42028 6.47156 6.84513 6.93823 7.00973 7.14690 7.22154 7.54364 7.67985 7.92189 7.98718 8.07379 8.25551 8.51655 8.65668 8.86494 8.92154 10.20620 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.005798 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.696735 B = 4827.929692 C = 5176.564574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 H 0.113 0.887 4 C 0.040 3.960 5 N -0.440 5.440 6 N -0.405 5.405 7 C 0.174 3.826 8 C -0.223 4.223 9 C -0.092 4.092 10 C -0.159 4.159 11 C 0.124 3.876 12 C -0.467 4.467 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.795 5.795 16 Si 0.909 3.091 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.222 4.222 21 C 0.499 3.501 22 O -0.510 6.510 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.338 0.662 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.282 0.718 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 7.092 9.152 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.185 4.185 3 H 0.131 0.869 4 C -0.088 4.088 5 N -0.164 5.164 6 N -0.221 5.221 7 C 0.085 3.915 8 C -0.244 4.244 9 C -0.112 4.112 10 C -0.179 4.179 11 C 0.121 3.879 12 C -0.497 4.497 13 H 0.096 0.904 14 C -0.140 4.140 15 N -0.420 5.420 16 Si 0.733 3.267 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.244 4.244 21 C 0.284 3.716 22 O -0.382 6.382 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.375 7.149 8.405 11.287 hybrid contribution -1.036 -0.581 -0.155 1.198 sum -3.411 6.569 8.250 11.084 Atomic orbital electron populations 1.21616 0.91906 1.02582 1.03122 1.22628 0.98398 1.01745 0.95680 0.86900 1.23517 1.02237 0.87368 0.95725 1.62860 1.45245 1.12581 0.95675 1.45011 1.57607 1.16259 1.03181 1.17132 0.94667 0.86976 0.92719 1.20164 1.01509 0.98375 1.04398 1.20520 0.99047 0.93619 0.97967 1.21284 0.99021 0.94714 1.02867 1.17386 0.88926 0.92347 0.89288 1.19459 1.38137 0.94551 0.97571 0.90374 1.25872 0.92366 1.01224 0.94546 1.69815 1.35205 1.38009 0.98987 0.86368 0.79901 0.82074 0.78357 1.19082 1.20375 1.18782 1.20759 1.04637 0.91091 1.07902 1.21271 0.77921 0.82790 0.89610 1.90729 1.55648 1.72397 1.19473 0.92422 0.91124 0.91366 0.88357 0.88694 0.84255 0.89004 0.88628 0.86646 0.90756 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.23 37.16 0.34 -1.07 16 2 C -0.16 -2.03 3.72 -90.28 -0.34 -2.36 16 3 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.04 0.44 7.52 -2.10 -0.02 0.42 16 5 N -0.44 -6.77 7.52 -8.65 -0.07 -6.84 16 6 N -0.40 -8.00 3.43 -9.59 -0.03 -8.03 16 7 C 0.17 4.13 6.00 -83.76 -0.50 3.63 16 8 C -0.22 -5.43 9.11 -39.10 -0.36 -5.79 16 9 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 10 C -0.16 -4.18 8.67 -38.84 -0.34 -4.51 16 11 C 0.12 3.30 5.52 -106.85 -0.59 2.71 16 12 C -0.47 -12.31 9.03 -37.74 -0.34 -12.65 16 13 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 14 C 0.08 1.95 5.11 -17.35 -0.09 1.86 16 15 N -0.79 -20.71 11.22 55.55 0.62 -20.08 16 16 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.22 -5.51 9.53 -38.68 -0.37 -5.88 16 21 C 0.50 9.51 7.22 -10.52 -0.08 9.44 16 22 O -0.51 -11.78 16.89 5.55 0.09 -11.68 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 28 H 0.34 4.69 9.04 -181.55 -1.64 3.05 16 29 H 0.09 2.18 7.65 -52.48 -0.40 1.78 16 30 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 31 H 0.12 3.08 6.46 -52.48 -0.34 2.74 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -30.98 284.74 -8.49 -39.47 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.30 Total: 6.19 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.07 Total: -16.86 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.53 Total: -34.95 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.98 -8.49 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.139 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds