Wall clock time and date at job start Mon Mar 30 2020 04:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.75597 * 2 1 4 4 C 1.54798 * 110.85262 * 123.71017 * 2 1 3 5 5 N 1.48309 * 101.80082 * 93.98114 * 4 2 1 6 6 N 1.36330 * 107.75163 * 26.67543 * 5 4 2 7 7 C 1.39943 * 123.52548 * 161.32335 * 6 5 4 8 8 C 1.39286 * 119.94697 * 226.74587 * 7 6 5 9 9 C 1.38488 * 120.42717 * 180.02562 * 8 7 6 10 10 C 1.37683 * 120.32144 * 0.02562 * 9 8 7 11 11 C 1.40729 * 119.88734 * 359.97438 * 10 9 8 12 12 C 1.41413 * 120.21225 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99888 * 151.34069 * 12 11 10 14 14 C 1.39934 * 119.99844 * 331.34098 * 12 11 10 15 15 N 1.30823 * 120.00177 * 342.66415 * 14 12 11 16 16 Si 1.86798 * 119.99716 * 162.66006 * 14 12 11 17 17 H 1.48504 * 109.46943 * 60.00538 * 16 14 12 18 18 H 1.48494 * 109.47169 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47448 * 300.00264 * 16 14 12 20 20 C 1.38238 * 119.94479 * 46.47455 * 7 6 5 21 21 C 1.34594 * 112.94872 * 341.06243 * 6 5 4 22 22 O 1.21287 * 126.03583 * 181.88711 * 21 6 5 23 23 H 1.09004 * 109.46834 * 182.02842 * 1 2 3 24 24 H 1.08992 * 109.47145 * 302.02731 * 1 2 3 25 25 H 1.08994 * 109.47031 * 62.03315 * 1 2 3 26 26 H 1.09005 * 110.94867 * 212.33441 * 4 2 1 27 27 H 1.09004 * 110.94412 * 336.00116 * 4 2 1 28 28 H 1.00904 * 111.16562 * 264.84123 * 5 4 2 29 29 H 1.08005 * 119.78837 * 0.02562 * 8 7 6 30 30 H 1.08007 * 119.83868 * 179.97438 * 9 8 7 31 31 H 1.08004 * 120.05536 * 180.02562 * 10 9 8 32 32 H 0.96998 * 120.00226 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.16384 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0810 -0.8028 1.2034 5 7 2.2832 -2.1450 0.6055 6 7 2.4944 -1.9772 -0.7308 7 6 3.0849 -2.9479 -1.5479 8 6 4.0934 -2.5873 -2.4383 9 6 4.6843 -3.5396 -3.2518 10 6 4.2803 -4.8543 -3.1894 11 6 3.2625 -5.2335 -2.2946 12 6 2.8426 -6.5820 -2.2245 13 1 2.4451 -6.9765 -1.3010 14 6 2.9422 -7.4053 -3.3516 15 7 3.0932 -6.8748 -4.5379 16 14 2.8597 -9.2618 -3.1623 17 1 1.5581 -9.6401 -2.5556 18 1 2.9879 -9.9016 -4.4962 19 1 3.9666 -9.7197 -2.2846 20 6 2.6702 -4.2640 -1.4659 21 6 2.0704 -0.7826 -1.1832 22 8 2.1123 -0.3993 -2.3332 23 1 -0.3633 -1.0271 0.0364 24 1 -0.3633 0.5450 0.8712 25 1 -0.3633 0.4819 -0.9076 26 1 3.0236 -0.3821 1.5538 27 1 1.3506 -0.8442 2.0114 28 1 1.4875 -2.7423 0.7737 29 1 4.4168 -1.5583 -2.4947 30 1 5.4652 -3.2494 -3.9392 31 1 4.7444 -5.5936 -3.8256 32 1 3.1626 -7.4455 -5.3191 33 1 1.8917 -4.5455 -0.7723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:28 Heat of formation + Delta-G solvation = 0.855129 kcal Electronic energy + Delta-G solvation = -17432.332101 eV Core-core repulsion = 14650.856219 eV Total energy + Delta-G solvation = -2781.475882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.31227 -39.26233 -38.27117 -35.86366 -34.50399 -31.94068 -31.63850 -29.64908 -27.38301 -27.01034 -24.31751 -22.94626 -22.09280 -21.18389 -19.66111 -18.13220 -17.74482 -17.06600 -16.87939 -16.40527 -15.98239 -15.26385 -15.09623 -15.02032 -14.67171 -14.15444 -13.83861 -13.58072 -13.42513 -13.07604 -13.03147 -12.78834 -12.69327 -12.31761 -12.16360 -11.90062 -11.66093 -11.40319 -11.05003 -10.74442 -9.88804 -9.47508 -8.75367 -8.63350 -6.40107 0.72504 0.91492 1.40072 1.43808 1.52339 1.53998 1.63180 2.21902 2.68316 3.05520 3.46307 3.61072 3.68541 3.90957 4.28221 4.35554 4.48936 4.56565 4.67280 4.84419 4.89544 4.91407 4.92013 5.02247 5.15074 5.17026 5.29498 5.61795 5.77871 5.88641 6.01651 6.02876 6.25398 6.58350 6.65929 6.88053 6.89840 7.15514 8.33419 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.005798 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.696735 B = 4827.929692 C = 5176.564574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.144 4.144 3 H 0.135 0.865 4 C 0.048 3.952 5 N -0.452 5.452 6 N -0.413 5.413 7 C 0.176 3.824 8 C -0.239 4.239 9 C -0.092 4.092 10 C -0.185 4.185 11 C 0.097 3.903 12 C -0.498 4.498 13 H 0.082 0.918 14 C 0.036 3.964 15 N -0.828 5.828 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.234 4.234 21 C 0.480 3.520 22 O -0.563 6.563 23 H 0.050 0.950 24 H 0.113 0.887 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.347 0.653 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.289 0.711 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 7.314 11.334 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 H 0.153 0.847 4 C -0.080 4.080 5 N -0.177 5.177 6 N -0.227 5.227 7 C 0.086 3.914 8 C -0.261 4.261 9 C -0.111 4.111 10 C -0.205 4.205 11 C 0.094 3.906 12 C -0.527 4.527 13 H 0.100 0.900 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.256 4.256 21 C 0.269 3.731 22 O -0.439 6.439 23 H 0.069 0.931 24 H 0.132 0.868 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.160 0.840 28 H 0.167 0.833 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.336 7.399 10.622 13.368 hybrid contribution -0.759 -0.548 -0.798 1.230 sum -4.095 6.851 9.824 12.657 Atomic orbital electron populations 1.21678 0.90060 1.02752 1.04437 1.22706 0.99609 1.01795 0.92608 0.84726 1.23816 1.04209 0.84265 0.95677 1.62867 1.46342 1.15547 0.92981 1.45104 1.57045 1.15672 1.04842 1.17239 0.93828 0.87672 0.92678 1.20321 1.02344 0.98362 1.05083 1.20763 0.99249 0.93067 0.97981 1.21241 1.00097 0.95242 1.03882 1.17778 0.89403 0.93374 0.89997 1.19766 1.39363 0.95118 0.98423 0.89952 1.26797 0.91190 1.06219 0.93670 1.69879 1.35402 1.40144 0.99930 0.85198 0.80168 0.75330 0.78680 1.18223 1.19400 1.18233 1.20877 1.05088 0.91433 1.08169 1.22574 0.76913 0.82927 0.90685 1.90685 1.57596 1.73407 1.22211 0.93076 0.86808 0.92817 0.87230 0.84011 0.83275 0.88864 0.86456 0.87856 0.89994 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.23 71.98 0.66 -1.66 16 2 C -0.14 -3.18 3.72 -10.57 -0.04 -3.22 16 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.05 0.84 7.52 86.64 0.65 1.49 16 5 N -0.45 -12.97 7.52 -181.29 -1.36 -14.34 16 6 N -0.41 -16.12 3.43 -302.74 -1.04 -17.16 16 7 C 0.18 8.52 6.00 38.10 0.23 8.75 16 8 C -0.24 -11.99 9.11 22.58 0.21 -11.78 16 9 C -0.09 -4.61 10.02 22.20 0.22 -4.39 16 10 C -0.18 -10.08 8.67 22.75 0.20 -9.89 16 11 C 0.10 5.38 5.52 -21.31 -0.12 5.27 16 12 C -0.50 -26.76 9.03 23.46 0.21 -26.55 16 13 H 0.08 4.20 7.90 -2.91 -0.02 4.17 16 14 C 0.04 1.84 5.11 85.25 0.44 2.27 16 15 N -0.83 -44.00 11.22 21.82 0.24 -43.75 16 16 Si 0.99 37.88 29.59 68.60 2.03 39.91 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 18 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 20 C -0.23 -11.87 9.53 22.85 0.22 -11.66 16 21 C 0.48 18.08 7.22 88.04 0.64 18.71 16 22 O -0.56 -26.52 16.89 -3.05 -0.05 -26.57 16 23 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.14 1.25 7.91 -2.39 -0.02 1.23 16 28 H 0.35 8.89 9.04 -210.71 -1.91 6.98 16 29 H 0.09 4.56 7.65 -2.91 -0.02 4.53 16 30 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.10 5.77 6.46 -2.91 -0.02 5.75 16 32 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 33 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.83 284.74 2.55 -68.28 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.78 Total: 26.27 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 3.51 Total: -32.65 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.16 Total: -75.24 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -70.83 2.55 -68.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.134 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds