Wall clock time and date at job start Mon Mar 30 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46994 * 2 1 4 4 C 1.50699 * 109.47082 * 239.99690 * 2 1 3 5 5 H 1.08008 * 119.99642 * 239.99382 * 4 2 1 6 6 C 1.37871 * 120.00163 * 59.99864 * 4 2 1 7 7 N 1.31515 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47060 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47124 * 119.99915 * 8 6 4 11 11 H 1.48497 * 109.47719 * 240.00105 * 8 6 4 12 12 C 1.50698 * 109.47019 * 119.99540 * 2 1 3 13 13 C 1.38445 * 119.86181 * 60.00422 * 12 2 1 14 14 C 1.38098 * 120.28238 * 180.02562 * 13 12 2 15 15 C 1.38660 * 119.85442 * 359.97438 * 14 13 12 16 16 C 1.39630 * 119.86610 * 0.02562 * 15 14 13 17 17 C 1.38106 * 119.85793 * 239.97613 * 12 2 1 18 18 N 1.39290 * 106.79747 * 179.97438 * 16 15 14 19 19 H 0.96997 * 125.81225 * 180.02562 * 18 16 15 20 20 C 1.34639 * 108.36534 * 359.97438 * 18 16 15 21 21 O 1.21686 * 125.16447 * 179.97438 * 20 18 16 22 22 N 1.34638 * 109.67607 * 0.02562 * 20 18 16 23 23 C 1.46505 * 125.82022 * 180.26462 * 22 20 18 24 24 H 1.09001 * 109.46996 * 300.00221 * 1 2 3 25 25 H 1.08995 * 109.47369 * 60.00676 * 1 2 3 26 26 H 1.09002 * 109.46735 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99848 * 179.97438 * 7 6 4 28 28 H 1.07995 * 119.85217 * 0.02562 * 13 12 2 29 29 H 1.08004 * 120.07380 * 180.02562 * 14 13 12 30 30 H 1.07998 * 120.07437 * 359.97438 * 17 12 2 31 31 H 1.08994 * 109.46762 * 269.69243 * 23 22 20 32 32 H 1.08996 * 109.46761 * 29.69146 * 23 22 20 33 33 H 1.08999 * 109.47182 * 149.69234 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1678 -1.5870 -4.8163 11 1 3.1472 -0.1862 -4.8161 12 6 2.0323 -0.7103 1.2305 13 6 1.6961 -2.0358 1.4468 14 6 2.1512 -2.6950 2.5717 15 6 2.9487 -2.0265 3.4882 16 6 3.2877 -0.6897 3.2701 17 6 2.8265 -0.0364 2.1374 18 7 4.0834 -0.2960 4.3435 19 1 4.4712 0.5841 4.4697 20 6 4.2214 -1.3447 5.1764 21 8 4.8585 -1.3372 6.2131 22 7 3.5485 -2.4035 4.6875 23 6 3.4572 -3.7249 5.3136 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7095 1.1616 -3.4845 28 1 1.0754 -2.5564 0.7327 29 1 1.8873 -3.7292 2.7369 30 1 3.0874 0.9973 1.9649 31 1 4.2723 -4.3536 4.9555 32 1 3.5281 -3.6196 6.3962 33 1 2.5032 -4.1843 5.0549 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:59 Heat of formation + Delta-G solvation = 14.885304 kcal Electronic energy + Delta-G solvation = -17303.421381 eV Core-core repulsion = 14522.553893 eV Total energy + Delta-G solvation = -2780.867488 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13752 -38.25729 -36.16245 -34.79173 -33.72768 -31.10307 -29.58903 -28.13571 -26.79127 -25.17241 -22.76591 -22.06002 -21.08818 -20.07628 -17.76384 -17.12299 -16.33477 -15.94748 -15.51808 -15.43038 -14.56284 -14.11951 -13.66533 -13.50635 -13.37066 -12.85435 -12.49576 -12.38946 -11.92989 -11.49235 -11.07077 -10.99077 -10.85192 -10.64281 -10.53788 -10.37225 -10.14106 -9.82157 -9.56516 -8.98384 -8.43535 -7.97925 -7.31399 -6.06977 -4.14085 1.67564 1.89340 2.49008 3.07810 3.25595 3.34502 3.38195 3.56967 4.22135 4.41275 4.82552 4.89355 5.24244 5.26383 5.40122 5.49951 5.65566 5.72273 5.84334 5.95625 6.28894 6.42513 6.61699 6.77970 6.83997 6.99678 7.07928 7.11263 7.22771 7.24354 7.59990 7.67412 7.87987 8.03335 8.31579 8.39141 8.88926 9.51266 10.98536 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.005370 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.654869 B = 5212.829244 C = 5345.457539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.036 0.964 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.017 4.017 13 C -0.095 4.095 14 C -0.109 4.109 15 C 0.058 3.942 16 C 0.084 3.916 17 C -0.117 4.117 18 N -0.644 5.644 19 H 0.430 0.570 20 C 0.678 3.322 21 O -0.576 6.576 22 N -0.542 5.542 23 C 0.104 3.896 24 H 0.010 0.990 25 H 0.086 0.914 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -5.452 9.787 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.019 4.019 13 C -0.115 4.115 14 C -0.130 4.130 15 C -0.041 4.041 16 C -0.017 4.017 17 C -0.138 4.138 18 N -0.289 5.289 19 H 0.271 0.729 20 C 0.380 3.620 21 O -0.455 6.455 22 N -0.266 5.266 23 C -0.037 4.037 24 H 0.029 0.971 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.627 -5.525 10.447 11.929 hybrid contribution 0.554 -0.045 -0.848 1.014 sum 2.181 -5.570 9.599 11.310 Atomic orbital electron populations 1.21797 0.97386 0.99447 1.00417 1.17902 0.92983 0.95518 0.88183 0.94541 1.21137 1.31266 1.12501 0.89722 0.92233 1.24949 0.94991 0.94968 0.98977 1.69891 1.36635 1.22823 1.23409 0.86531 0.78672 0.79756 0.83045 1.19720 1.21005 1.21049 1.20458 0.92523 0.93660 0.95218 1.20894 1.00155 0.94691 0.95743 1.20019 0.99464 0.99522 0.94029 1.17937 1.02972 0.93393 0.89786 1.18032 0.98524 0.93162 0.92013 1.20111 1.01300 1.00340 0.92037 1.42876 1.50103 1.14406 1.21479 0.72883 1.15903 0.81859 0.80509 0.83744 1.91009 1.47663 1.83009 1.23785 1.44812 1.48420 1.12216 1.21103 1.21631 1.02730 0.80584 0.98791 0.97136 0.89561 0.95108 0.92945 0.84747 0.86163 0.85660 0.91680 0.89956 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.78 37.16 0.33 -2.62 16 2 C 0.07 1.66 2.47 -92.93 -0.23 1.43 16 3 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 4 C -0.51 -12.87 8.23 -34.44 -0.28 -13.15 16 5 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C -0.02 -0.33 4.74 -104.60 -0.50 -0.82 16 13 C -0.10 -1.67 8.69 -39.56 -0.34 -2.01 16 14 C -0.11 -1.66 10.02 -39.48 -0.40 -2.05 16 15 C 0.06 0.93 6.83 -83.79 -0.57 0.36 16 16 C 0.08 1.38 7.26 -83.80 -0.61 0.77 16 17 C -0.12 -2.04 9.68 -39.47 -0.38 -2.43 16 18 N -0.64 -9.68 6.15 -14.30 -0.09 -9.76 16 19 H 0.43 5.25 8.96 -40.82 -0.37 4.88 16 20 C 0.68 11.34 8.83 -87.17 -0.77 10.57 16 21 O -0.58 -10.96 17.76 5.20 0.09 -10.86 16 22 N -0.54 -8.12 3.19 -126.32 -0.40 -8.52 16 23 C 0.10 1.12 11.01 59.85 0.66 1.78 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.13 2.32 7.56 -52.49 -0.40 1.93 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.13 2.04 7.94 -52.49 -0.42 1.62 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -29.65 283.31 -7.64 -37.29 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.93 Total: 2.35 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.19 Total: -6.65 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.14 Total: -41.64 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.65 -7.64 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.179 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds