Wall clock time and date at job start Mon Mar 30 2020 04:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46994 * 2 1 4 4 C 1.50699 * 109.47082 * 239.99690 * 2 1 3 5 5 H 1.08008 * 119.99642 * 239.99382 * 4 2 1 6 6 C 1.37871 * 120.00163 * 59.99864 * 4 2 1 7 7 N 1.31515 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47060 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47124 * 119.99915 * 8 6 4 11 11 H 1.48497 * 109.47719 * 240.00105 * 8 6 4 12 12 C 1.50698 * 109.47019 * 119.99540 * 2 1 3 13 13 C 1.38445 * 119.86181 * 60.00422 * 12 2 1 14 14 C 1.38098 * 120.28238 * 180.02562 * 13 12 2 15 15 C 1.38660 * 119.85442 * 359.97438 * 14 13 12 16 16 C 1.39630 * 119.86610 * 0.02562 * 15 14 13 17 17 C 1.38106 * 119.85793 * 239.97613 * 12 2 1 18 18 N 1.39290 * 106.79747 * 179.97438 * 16 15 14 19 19 H 0.96997 * 125.81225 * 180.02562 * 18 16 15 20 20 C 1.34639 * 108.36534 * 359.97438 * 18 16 15 21 21 O 1.21686 * 125.16447 * 179.97438 * 20 18 16 22 22 N 1.34638 * 109.67607 * 0.02562 * 20 18 16 23 23 C 1.46505 * 125.82022 * 180.26462 * 22 20 18 24 24 H 1.09001 * 109.46996 * 300.00221 * 1 2 3 25 25 H 1.08995 * 109.47369 * 60.00676 * 1 2 3 26 26 H 1.09002 * 109.46735 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99848 * 179.97438 * 7 6 4 28 28 H 1.07995 * 119.85217 * 0.02562 * 13 12 2 29 29 H 1.08004 * 120.07380 * 180.02562 * 14 13 12 30 30 H 1.07998 * 120.07437 * 359.97438 * 17 12 2 31 31 H 1.08994 * 109.46762 * 269.69243 * 23 22 20 32 32 H 1.08996 * 109.46761 * 29.69146 * 23 22 20 33 33 H 1.08999 * 109.47182 * 149.69234 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1678 -1.5870 -4.8163 11 1 3.1472 -0.1862 -4.8161 12 6 2.0323 -0.7103 1.2305 13 6 1.6961 -2.0358 1.4468 14 6 2.1512 -2.6950 2.5717 15 6 2.9487 -2.0265 3.4882 16 6 3.2877 -0.6897 3.2701 17 6 2.8265 -0.0364 2.1374 18 7 4.0834 -0.2960 4.3435 19 1 4.4712 0.5841 4.4697 20 6 4.2214 -1.3447 5.1764 21 8 4.8585 -1.3372 6.2131 22 7 3.5485 -2.4035 4.6875 23 6 3.4572 -3.7249 5.3136 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7095 1.1616 -3.4845 28 1 1.0754 -2.5564 0.7327 29 1 1.8873 -3.7292 2.7369 30 1 3.0874 0.9973 1.9649 31 1 4.2723 -4.3536 4.9555 32 1 3.5281 -3.6196 6.3962 33 1 2.5032 -4.1843 5.0549 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:58 Heat of formation + Delta-G solvation = -2.309500 kcal Electronic energy + Delta-G solvation = -17304.167003 eV Core-core repulsion = 14522.553893 eV Total energy + Delta-G solvation = -2781.613110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.39025 -39.63613 -37.60492 -35.95110 -35.44382 -32.81329 -30.95948 -29.33381 -28.03822 -27.11314 -24.24173 -23.39186 -22.26968 -21.64592 -19.02664 -18.66457 -17.70753 -17.54220 -17.00196 -16.57270 -16.27687 -15.56306 -14.89969 -14.83491 -14.45728 -14.45091 -13.95451 -13.54330 -13.32977 -13.20335 -12.81550 -12.78491 -12.30010 -12.20529 -12.02972 -11.84705 -11.73404 -11.27699 -11.24817 -10.76389 -10.40424 -9.26462 -8.66276 -8.02968 -6.16196 0.37052 0.54376 1.36253 1.45466 1.49400 1.58959 1.80509 2.32901 2.48743 2.91098 3.25719 3.64067 3.88255 4.16016 4.38781 4.50518 4.53000 4.55008 4.65199 4.76546 4.91996 5.00634 5.16350 5.20208 5.31388 5.42273 5.58221 5.61511 5.75942 5.82870 5.92188 6.14198 6.15790 6.32644 6.43936 6.93455 7.15291 7.51907 9.00998 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.005370 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.654869 B = 5212.829244 C = 5345.457539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.073 3.927 3 H 0.007 0.993 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.286 1.286 12 C -0.040 4.040 13 C -0.102 4.102 14 C -0.091 4.091 15 C 0.060 3.940 16 C 0.078 3.922 17 C -0.119 4.119 18 N -0.635 5.635 19 H 0.440 0.560 20 C 0.669 3.331 21 O -0.603 6.603 22 N -0.537 5.537 23 C 0.093 3.907 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.260 0.740 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -7.379 10.555 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.054 3.946 3 H 0.026 0.974 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.213 1.213 12 C -0.042 4.042 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.040 4.040 16 C -0.023 4.023 17 C -0.141 4.141 18 N -0.280 5.280 19 H 0.283 0.717 20 C 0.371 3.629 21 O -0.484 6.484 22 N -0.260 5.260 23 C -0.047 4.047 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.177 0.823 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.840 -7.465 11.223 13.604 hybrid contribution 0.509 0.545 -1.006 1.252 sum 2.350 -6.920 10.217 12.562 Atomic orbital electron populations 1.21641 0.97099 0.99693 0.99677 1.17738 0.93299 0.94123 0.89393 0.97444 1.21436 1.30720 1.12297 0.90849 0.92507 1.25650 0.95365 0.95667 1.01633 1.70018 1.37811 1.24094 1.23796 0.85630 0.78117 0.78754 0.79900 1.19111 1.20704 1.21273 1.20151 0.94536 0.94748 0.94721 1.20902 1.00548 0.93920 0.96768 1.20233 0.97715 1.00917 0.92297 1.18131 1.02598 0.93198 0.90114 1.18002 0.98703 0.93722 0.91897 1.20031 1.01174 1.00588 0.92262 1.42860 1.49497 1.14869 1.20745 0.71676 1.16072 0.82076 0.81132 0.83659 1.90989 1.48933 1.83514 1.24920 1.45046 1.47272 1.13136 1.20533 1.22013 1.04936 0.78841 0.98894 0.95587 0.92454 0.94253 0.93090 0.84750 0.82319 0.85405 0.90250 0.89687 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.78 71.98 0.63 -4.87 16 2 C 0.07 3.38 2.47 -12.29 -0.03 3.35 16 3 H 0.01 0.38 7.87 -2.39 -0.02 0.36 16 4 C -0.51 -26.21 8.23 25.60 0.21 -25.99 16 5 H 0.06 2.86 7.60 -2.91 -0.02 2.84 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -50.43 11.32 21.45 0.24 -50.19 16 8 Si 0.95 41.57 29.54 68.60 2.03 43.60 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 C -0.04 -1.52 4.74 -19.85 -0.09 -1.62 16 13 C -0.10 -3.36 8.69 22.29 0.19 -3.16 16 14 C -0.09 -2.44 10.02 22.34 0.22 -2.21 16 15 C 0.06 1.72 6.83 38.39 0.26 1.99 16 16 C 0.08 2.45 7.26 38.39 0.28 2.72 16 17 C -0.12 -4.11 9.68 22.34 0.22 -3.89 16 18 N -0.63 -18.12 6.15 -317.45 -1.95 -20.08 16 19 H 0.44 10.27 8.96 -92.71 -0.83 9.44 16 20 C 0.67 21.12 8.83 179.14 1.58 22.70 16 21 O -0.60 -22.10 17.76 -4.30 -0.08 -22.17 16 22 N -0.54 -14.52 3.19 -671.87 -2.14 -16.66 16 23 C 0.09 1.66 11.01 127.77 1.41 3.07 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 26 H 0.04 1.63 7.37 -2.39 -0.02 1.61 16 27 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 28 H 0.13 4.40 7.56 -2.91 -0.02 4.38 16 29 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.13 4.19 7.94 -2.91 -0.02 4.17 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -63.17 283.31 3.73 -59.44 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.30 Total: 12.73 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.33 Total: -6.66 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.85 Total: -86.92 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.08 Total: -22.17 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -63.17 3.73 -59.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.127 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds