Wall clock time and date at job start Mon Mar 30 2020 03:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38153 * 119.95411 * 2 1 4 4 C 1.38470 * 120.39035 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.85293 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.46877 * 339.97351 * 5 4 3 7 7 N 1.46907 * 109.47209 * 219.97799 * 5 4 3 8 8 C 1.52995 * 109.47559 * 99.97560 * 5 4 3 9 9 C 1.50697 * 109.47571 * 185.00105 * 8 5 4 10 10 H 1.08003 * 119.99634 * 0.02562 * 9 8 5 11 11 C 1.37878 * 120.00308 * 180.02562 * 9 8 5 12 12 N 1.31514 * 119.99904 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47011 * 90.00046 * 13 11 9 15 15 H 1.48498 * 109.46902 * 209.99838 * 13 11 9 16 16 H 1.48490 * 109.47234 * 330.00364 * 13 11 9 17 17 C 1.37865 * 120.29671 * 359.97438 * 4 3 2 18 18 C 1.39674 * 119.90148 * 0.02562 * 17 4 3 19 19 C 1.43207 * 120.19457 * 179.97438 * 18 17 4 20 20 N 4.81115 * 134.88588 * 179.97438 * 2 1 3 21 21 C 1.38602 * 119.95555 * 179.97438 * 2 1 3 22 22 O 1.35711 * 120.14618 * 0.04522 * 21 2 1 23 23 H 1.08997 * 109.47396 * 89.99987 * 1 2 3 24 24 H 1.09003 * 109.47202 * 209.99831 * 1 2 3 25 25 H 1.08997 * 109.47002 * 330.00054 * 1 2 3 26 26 H 1.07993 * 119.80368 * 359.95860 * 3 2 1 27 27 H 1.00899 * 110.99819 * 176.04282 * 7 5 4 28 28 H 1.00900 * 110.99541 * 300.00049 * 7 5 4 29 29 H 1.09002 * 109.47351 * 305.00720 * 8 5 4 30 30 H 1.09004 * 109.46834 * 64.99808 * 8 5 4 31 31 H 0.96996 * 120.00006 * 180.02562 * 12 11 9 32 32 H 1.08004 * 120.05148 * 179.74474 * 17 4 3 33 33 H 0.96695 * 114.00205 * 89.99958 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1970 0.0000 4 6 3.5814 1.2075 0.0005 5 6 4.3216 2.5202 0.0011 6 1 3.6591 3.3110 -0.3509 7 7 5.4870 2.4257 -0.8883 8 6 4.7892 2.8415 1.4220 9 6 5.4209 4.2095 1.4457 10 1 5.4823 4.7918 0.5382 11 6 5.9205 4.7178 2.6260 12 7 5.8462 4.0086 3.7310 13 14 6.7041 6.4132 2.6553 14 1 5.6650 7.4339 2.9447 15 1 7.7487 6.4575 3.7098 16 1 7.3214 6.6961 1.3347 17 6 4.2860 0.0225 0.0016 18 6 3.6010 -1.1948 0.0016 19 6 4.3266 -2.4294 0.0022 20 7 4.9022 -3.4088 0.0015 21 6 2.1990 -1.2009 0.0005 22 8 1.5226 -2.3774 0.0001 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6529 2.1300 -0.0007 27 1 5.9634 3.3126 -0.9555 28 1 6.1168 1.6990 -0.5830 29 1 3.9347 2.8240 2.0984 30 1 5.5201 2.0982 1.7407 31 1 6.1973 4.3663 4.5615 32 1 5.3659 0.0353 -0.0021 33 1 1.3271 -2.7184 -0.8833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:12 Heat of formation + Delta-G solvation = -6.745896 kcal Electronic energy + Delta-G solvation = -16919.273099 eV Core-core repulsion = 14137.467612 eV Total energy + Delta-G solvation = -2781.805487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.16190 -37.42047 -36.42128 -35.05346 -32.80010 -32.31134 -29.91003 -28.03535 -26.80525 -24.51407 -23.77750 -21.94221 -19.62003 -18.68081 -17.68943 -16.75909 -16.14594 -15.73429 -14.77586 -14.68679 -14.00404 -13.72148 -13.45498 -13.30357 -13.11497 -12.94102 -12.71993 -12.58734 -12.26641 -12.10329 -11.91239 -11.50764 -11.29791 -10.98369 -10.66814 -10.57869 -10.36405 -9.97589 -9.26663 -8.72615 -8.53587 -8.39347 -7.79266 -6.14154 -4.19517 0.84602 1.34079 2.77143 3.06101 3.23355 3.30931 3.32533 3.80054 3.96318 4.13398 4.33816 4.79764 4.97527 5.20959 5.28163 5.36251 5.52287 5.56102 5.65399 5.71346 5.79550 6.04805 6.25234 6.27038 6.39665 6.56613 6.78746 6.82306 7.36372 7.48484 7.50541 7.60402 7.78179 7.92039 8.10887 8.22942 8.87091 9.46399 10.96351 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.005374 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.418295 B = 5208.659861 C = 5627.002551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.072 4.072 4 C -0.051 4.051 5 C 0.124 3.876 6 H 0.082 0.918 7 N -0.841 5.841 8 C -0.001 4.001 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.049 4.049 18 C -0.057 4.057 19 C 0.269 3.731 20 N -0.429 5.429 21 C 0.133 3.867 22 O -0.491 6.491 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.134 0.866 27 H 0.350 0.650 28 H 0.329 0.671 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.133 0.867 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 -6.165 -8.920 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.091 4.091 4 C -0.051 4.051 5 C 0.013 3.987 6 H 0.100 0.900 7 N -0.370 5.370 8 C -0.040 4.040 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.070 4.070 18 C -0.061 4.061 19 C -0.046 4.046 20 N -0.104 5.104 21 C 0.086 3.914 22 O -0.301 6.301 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.140 0.860 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.711 -7.805 -8.697 14.575 hybrid contribution 0.827 1.497 0.690 1.844 sum -7.884 -6.309 -8.007 12.887 Atomic orbital electron populations 1.20674 0.90244 1.03440 1.02264 1.20015 0.96781 0.91766 1.02621 1.21093 0.93596 0.97445 0.97005 1.20119 0.93416 0.95693 0.95921 1.20596 0.92034 0.90975 0.95098 0.89978 1.59291 1.12230 1.11872 1.53567 1.19831 0.96929 0.96972 0.90224 1.21119 1.39197 1.01492 0.94842 0.92405 1.25016 0.95880 0.97582 0.95668 1.69963 1.45880 1.37380 0.99549 0.86577 0.79120 0.84367 0.77851 1.20592 1.21249 1.19769 1.20870 1.00332 0.89545 0.96224 1.16355 0.91282 0.87669 1.10764 1.25510 0.93098 0.92661 0.93359 1.81179 1.08886 1.10905 1.09455 1.18054 0.87483 0.85281 1.00582 1.84758 1.76096 1.35906 1.33346 0.91313 0.90909 0.91081 0.84821 0.83667 0.85961 0.95970 0.96302 0.92800 0.84876 0.75512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.79 36.00 0.35 -0.67 16 2 C -0.11 -1.36 5.89 -104.52 -0.62 -1.98 16 3 C -0.07 -0.99 9.30 -39.53 -0.37 -1.36 16 4 C -0.05 -0.80 4.95 -104.67 -0.52 -1.32 16 5 C 0.12 2.25 2.98 -68.86 -0.21 2.04 16 6 H 0.08 1.48 7.99 -51.93 -0.42 1.07 16 7 N -0.84 -14.13 9.02 -5.65 -0.05 -14.18 16 8 C 0.00 -0.03 4.60 -27.89 -0.13 -0.16 16 9 C -0.53 -13.50 8.55 -34.44 -0.29 -13.79 16 10 H 0.06 1.41 7.15 -52.48 -0.38 1.04 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 13 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.05 -0.74 8.99 -39.18 -0.35 -1.09 16 18 C -0.06 -0.82 5.75 -106.69 -0.61 -1.43 16 19 C 0.27 4.14 14.87 -22.47 -0.33 3.81 16 20 N -0.43 -7.23 18.54 41.84 0.78 -6.46 16 21 C 0.13 1.72 6.68 -38.71 -0.26 1.46 16 22 O -0.49 -5.51 11.98 -18.84 -0.23 -5.73 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 25 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.13 1.63 8.03 -52.49 -0.42 1.21 16 27 H 0.35 6.07 7.90 -39.29 -0.31 5.76 16 28 H 0.33 5.31 7.33 -39.29 -0.29 5.03 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.13 1.98 6.64 -52.48 -0.35 1.63 16 33 H 0.39 2.54 9.06 45.56 0.41 2.95 16 LS Contribution 293.95 15.07 4.43 4.43 Total: -1.00 -30.05 293.95 -5.75 -35.80 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -2.96 Total: 8.37 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.43 Total: -12.94 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.46 Total: -45.40 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.23 Total: -5.73 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.05 -5.75 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.051 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds