Wall clock time and date at job start Mon Mar 30 2020 03:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38153 * 119.95411 * 2 1 4 4 C 1.38470 * 120.39035 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.85293 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.46877 * 339.97351 * 5 4 3 7 7 N 1.46907 * 109.47209 * 219.97799 * 5 4 3 8 8 C 1.52995 * 109.47559 * 99.97560 * 5 4 3 9 9 C 1.50697 * 109.47571 * 185.00105 * 8 5 4 10 10 H 1.08003 * 119.99634 * 0.02562 * 9 8 5 11 11 C 1.37878 * 120.00308 * 180.02562 * 9 8 5 12 12 N 1.31514 * 119.99904 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47011 * 90.00046 * 13 11 9 15 15 H 1.48498 * 109.46902 * 209.99838 * 13 11 9 16 16 H 1.48490 * 109.47234 * 330.00364 * 13 11 9 17 17 C 1.37865 * 120.29671 * 359.97438 * 4 3 2 18 18 C 1.39674 * 119.90148 * 0.02562 * 17 4 3 19 19 C 1.43207 * 120.19457 * 179.97438 * 18 17 4 20 20 N 4.81115 * 134.88588 * 179.97438 * 2 1 3 21 21 C 1.38602 * 119.95555 * 179.97438 * 2 1 3 22 22 O 1.35711 * 120.14618 * 0.04522 * 21 2 1 23 23 H 1.08997 * 109.47396 * 89.99987 * 1 2 3 24 24 H 1.09003 * 109.47202 * 209.99831 * 1 2 3 25 25 H 1.08997 * 109.47002 * 330.00054 * 1 2 3 26 26 H 1.07993 * 119.80368 * 359.95860 * 3 2 1 27 27 H 1.00899 * 110.99819 * 176.04282 * 7 5 4 28 28 H 1.00900 * 110.99541 * 300.00049 * 7 5 4 29 29 H 1.09002 * 109.47351 * 305.00720 * 8 5 4 30 30 H 1.09004 * 109.46834 * 64.99808 * 8 5 4 31 31 H 0.96996 * 120.00006 * 180.02562 * 12 11 9 32 32 H 1.08004 * 120.05148 * 179.74474 * 17 4 3 33 33 H 0.96695 * 114.00205 * 89.99958 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1970 0.0000 4 6 3.5814 1.2075 0.0005 5 6 4.3216 2.5202 0.0011 6 1 3.6591 3.3110 -0.3509 7 7 5.4870 2.4257 -0.8883 8 6 4.7892 2.8415 1.4220 9 6 5.4209 4.2095 1.4457 10 1 5.4823 4.7918 0.5382 11 6 5.9205 4.7178 2.6260 12 7 5.8462 4.0086 3.7310 13 14 6.7041 6.4132 2.6553 14 1 5.6650 7.4339 2.9447 15 1 7.7487 6.4575 3.7098 16 1 7.3214 6.6961 1.3347 17 6 4.2860 0.0225 0.0016 18 6 3.6010 -1.1948 0.0016 19 6 4.3266 -2.4294 0.0022 20 7 4.9022 -3.4088 0.0015 21 6 2.1990 -1.2009 0.0005 22 8 1.5226 -2.3774 0.0001 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6529 2.1300 -0.0007 27 1 5.9634 3.3126 -0.9555 28 1 6.1168 1.6990 -0.5830 29 1 3.9347 2.8240 2.0984 30 1 5.5201 2.0982 1.7407 31 1 6.1973 4.3663 4.5615 32 1 5.3659 0.0353 -0.0021 33 1 1.3271 -2.7184 -0.8833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:11 Heat of formation + Delta-G solvation = -27.761087 kcal Electronic energy + Delta-G solvation = -16920.184386 eV Core-core repulsion = 14137.467612 eV Total energy + Delta-G solvation = -2782.716774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24194 -38.58551 -37.65698 -36.41442 -34.48427 -33.57266 -31.06817 -29.84723 -27.73014 -26.18564 -24.89665 -23.47514 -20.88300 -19.73832 -18.96274 -18.39601 -17.47563 -16.78065 -16.57671 -16.07960 -15.31078 -14.88623 -14.65330 -14.54872 -14.32105 -14.17739 -14.06433 -13.95813 -13.77310 -13.23963 -13.11015 -12.89234 -12.73403 -12.49687 -12.24346 -12.08999 -11.76100 -11.53104 -11.14707 -10.58356 -9.81944 -9.57525 -9.20969 -8.18884 -6.30245 -0.27267 0.26842 1.42756 1.43703 1.53691 1.54669 1.87643 2.41455 2.69557 2.81838 3.13734 3.15390 3.74185 3.84726 4.11613 4.31010 4.36635 4.49683 4.58811 4.79632 4.92545 4.94644 4.96316 5.11079 5.33229 5.38320 5.43255 5.48169 5.71804 5.77343 5.79482 6.18717 6.36709 6.42538 6.72976 6.75788 6.87434 7.40088 8.92040 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.005374 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.418295 B = 5208.659861 C = 5627.002551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.069 4.069 4 C -0.074 4.074 5 C 0.139 3.861 6 H 0.085 0.915 7 N -0.830 5.830 8 C 0.006 3.994 9 C -0.533 4.533 10 H 0.069 0.931 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.960 3.040 14 H -0.275 1.275 15 H -0.291 1.291 16 H -0.259 1.259 17 C -0.055 4.055 18 C -0.069 4.069 19 C 0.284 3.716 20 N -0.459 5.459 21 C 0.149 3.851 22 O -0.495 6.495 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.347 0.653 28 H 0.332 0.668 29 H -0.007 1.007 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.128 0.872 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 -5.762 -10.233 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.088 4.088 4 C -0.074 4.074 5 C 0.028 3.972 6 H 0.104 0.896 7 N -0.358 5.358 8 C -0.032 4.032 9 C -0.571 4.571 10 H 0.087 0.913 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.786 3.214 14 H -0.201 1.201 15 H -0.217 1.217 16 H -0.183 1.183 17 C -0.076 4.076 18 C -0.073 4.073 19 C -0.030 4.030 20 N -0.135 5.135 21 C 0.102 3.898 22 O -0.309 6.309 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.012 0.988 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.121 -7.415 -10.056 16.079 hybrid contribution 1.177 1.294 1.075 2.053 sum -8.944 -6.122 -8.981 14.076 Atomic orbital electron populations 1.20750 0.87665 1.03985 1.03939 1.20294 0.98462 0.90745 1.01221 1.21307 0.92774 0.98859 0.95899 1.19931 0.94379 0.94511 0.98615 1.20304 0.92536 0.92637 0.91746 0.89648 1.59303 1.12087 1.11753 1.52707 1.19727 0.94962 0.95431 0.93119 1.21583 1.38079 1.02374 0.95020 0.91273 1.25909 0.96724 1.01450 0.95465 1.70107 1.47594 1.39398 1.00208 0.85513 0.78056 0.79727 0.78148 1.20079 1.21704 1.18299 1.20823 1.00245 0.89910 0.96645 1.16377 0.92035 0.86760 1.12117 1.25640 0.92475 0.92493 0.92439 1.81186 1.09661 1.11887 1.10760 1.18113 0.86876 0.86213 0.98638 1.84701 1.75570 1.35156 1.35452 0.88957 0.90571 0.90351 0.83292 0.83993 0.85592 0.98833 0.99072 0.93021 0.85424 0.72717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.79 71.23 0.70 -0.91 16 2 C -0.11 -2.34 5.89 -19.80 -0.12 -2.45 16 3 C -0.07 -1.78 9.30 22.30 0.21 -1.57 16 4 C -0.07 -2.29 4.95 -19.90 -0.10 -2.39 16 5 C 0.14 5.02 2.98 44.17 0.13 5.15 16 6 H 0.09 3.00 7.99 -2.38 -0.02 2.98 16 7 N -0.83 -27.54 9.02 -171.79 -1.55 -29.09 16 8 C 0.01 0.30 4.60 29.85 0.14 0.43 16 9 C -0.53 -27.30 8.55 25.60 0.22 -27.08 16 10 H 0.07 3.32 7.15 -2.91 -0.02 3.30 16 11 C 0.00 0.14 5.46 84.66 0.46 0.60 16 12 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 13 Si 0.96 42.05 29.54 68.60 2.03 44.07 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 17 C -0.06 -1.67 8.99 22.53 0.20 -1.47 16 18 C -0.07 -1.92 5.75 -21.21 -0.12 -2.04 16 19 C 0.28 8.60 14.87 88.33 1.31 9.91 16 20 N -0.46 -15.36 18.54 19.01 0.35 -15.00 16 21 C 0.15 3.53 6.68 22.83 0.15 3.69 16 22 O -0.50 -9.71 11.98 -90.32 -1.08 -10.79 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 1.13 7.53 -2.39 -0.02 1.12 16 25 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 26 H 0.15 3.30 8.03 -2.91 -0.02 3.28 16 27 H 0.35 11.79 7.90 -89.69 -0.71 11.08 16 28 H 0.33 10.78 7.33 -89.69 -0.66 10.13 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.13 3.89 6.64 -2.91 -0.02 3.87 16 33 H 0.41 4.03 9.06 -74.06 -0.67 3.35 16 Total: -1.00 -64.79 293.95 2.35 -62.43 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.87 Total: 20.97 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 3.19 Total: -18.12 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -0.91 Total: -98.56 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.08 Total: -10.79 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -64.79 2.35 -62.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds