Wall clock time and date at job start Mon Mar 30 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38154 * 119.95034 * 2 1 4 4 C 1.38471 * 120.38917 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.85088 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47521 * 20.00143 * 5 4 3 7 7 N 1.46908 * 109.47079 * 140.00179 * 5 4 3 8 8 C 1.52996 * 109.47310 * 259.99913 * 5 4 3 9 9 C 1.50702 * 109.47159 * 174.99934 * 8 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.37866 * 120.29798 * 0.25132 * 4 3 2 18 18 C 1.39676 * 119.89723 * 359.45517 * 17 4 3 19 19 C 1.43203 * 120.19211 * 180.24855 * 18 17 4 20 20 N 4.81107 * 134.88758 * 179.97438 * 2 1 3 21 21 C 1.38600 * 119.95406 * 179.97438 * 2 1 3 22 22 O 1.35701 * 120.15131 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.47145 * 90.00433 * 1 2 3 24 24 H 1.09000 * 109.47144 * 210.00128 * 1 2 3 25 25 H 1.08994 * 109.47299 * 330.00346 * 1 2 3 26 26 H 1.08002 * 119.80508 * 359.97438 * 3 2 1 27 27 H 1.00902 * 111.00072 * 59.99841 * 7 5 4 28 28 H 1.00901 * 110.99845 * 183.95568 * 7 5 4 29 29 H 1.09004 * 109.47066 * 55.00137 * 8 5 4 30 30 H 1.08994 * 109.47405 * 294.99967 * 8 5 4 31 31 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 32 32 H 1.07995 * 120.05279 * 179.72765 * 17 4 3 33 33 H 0.96705 * 113.99716 * 90.00227 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1970 0.0000 4 6 3.5814 1.2076 0.0005 5 6 4.3215 2.5204 -0.0001 6 1 3.6586 3.3114 0.3507 7 7 5.4859 2.4265 0.8907 8 6 4.7907 2.8407 -1.4206 9 6 5.4223 4.2088 -1.4445 10 1 5.4834 4.7914 -0.5372 11 6 5.9279 4.7142 -2.6236 12 7 6.4840 5.9058 -2.6433 13 14 5.8229 3.7063 -4.1928 14 1 4.5514 4.0149 -4.8952 15 1 6.9696 4.0423 -5.0746 16 1 5.8643 2.2605 -3.8563 17 6 4.2860 0.0227 -0.0041 18 6 3.6011 -1.1946 0.0021 19 6 4.3267 -2.4292 0.0026 20 7 4.9023 -3.4086 0.0015 21 6 2.1991 -1.2009 0.0005 22 8 1.5227 -2.3773 0.0016 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6528 2.1301 -0.0004 27 1 6.1162 1.6996 0.5866 28 1 5.9622 3.3134 0.9579 29 1 3.9369 2.8228 -2.0980 30 1 5.5219 2.0974 -1.7380 31 1 6.8393 6.2614 -3.4728 32 1 5.3659 0.0356 -0.0082 33 1 1.3264 -2.7189 -0.8816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:14 Heat of formation + Delta-G solvation = -3.146328 kcal Electronic energy + Delta-G solvation = -16993.706126 eV Core-core repulsion = 14212.056728 eV Total energy + Delta-G solvation = -2781.649398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26837 -37.53473 -36.51246 -35.16551 -32.83922 -32.35112 -30.00605 -28.67843 -26.89816 -24.51115 -23.87969 -21.70276 -19.64448 -18.77598 -17.87641 -17.00019 -16.37100 -15.82882 -14.94938 -14.46115 -13.95697 -13.83766 -13.61828 -13.43625 -13.18838 -13.09530 -13.00498 -12.69181 -12.33784 -12.23560 -12.10658 -11.78141 -11.40418 -11.02714 -10.70053 -10.65145 -10.29613 -9.89399 -9.37233 -8.82823 -8.69902 -8.51462 -7.91622 -6.19836 -4.20327 0.73914 1.22775 2.68183 2.96110 3.19772 3.28861 3.30733 3.69849 3.86173 4.04785 4.31356 4.69810 4.86115 5.12445 5.18904 5.26232 5.41934 5.50701 5.55122 5.60536 5.69875 5.95557 6.13040 6.15243 6.29425 6.34639 6.63510 6.69861 6.91825 7.11531 7.41255 7.51281 7.58203 7.79715 8.08171 8.33330 8.82481 9.41916 10.92647 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023861 B = 0.006043 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.203598 B = 4632.277470 C = 4892.267924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.056 4.056 5 C 0.135 3.865 6 H 0.088 0.912 7 N -0.839 5.839 8 C -0.039 4.039 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.266 1.266 17 C -0.050 4.050 18 C -0.057 4.057 19 C 0.267 3.733 20 N -0.426 5.426 21 C 0.135 3.865 22 O -0.492 6.492 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.328 0.672 28 H 0.355 0.645 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.134 0.866 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 -10.819 3.232 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.112 4.112 3 C -0.091 4.091 4 C -0.057 4.057 5 C 0.024 3.976 6 H 0.106 0.894 7 N -0.369 5.369 8 C -0.078 4.078 9 C -0.565 4.565 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.191 1.191 17 C -0.071 4.071 18 C -0.061 4.061 19 C -0.048 4.048 20 N -0.102 5.102 21 C 0.088 3.912 22 O -0.302 6.302 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.299 -12.318 4.303 16.623 hybrid contribution 0.401 0.178 -2.392 2.432 sum -9.897 -12.141 1.910 15.780 Atomic orbital electron populations 1.20683 0.90142 1.03383 1.02472 1.20035 0.96862 0.91749 1.02511 1.21119 0.93553 0.97556 0.96837 1.20140 0.93494 0.95671 0.96376 1.20362 0.92382 0.91131 0.93767 0.89401 1.59258 1.12225 1.12213 1.53176 1.20339 0.96630 0.97997 0.92804 1.21012 1.38638 0.99882 0.97005 0.90643 1.24995 0.94421 0.94704 0.98945 1.69899 1.39159 1.16813 1.27584 0.86822 0.77896 0.81225 0.83590 1.20189 1.21332 1.19090 1.20889 1.00376 0.89560 0.96295 1.16358 0.91304 0.87675 1.10732 1.25502 0.93154 0.92678 0.93445 1.81191 1.08832 1.10846 1.09335 1.18065 0.87482 0.85346 1.00310 1.84738 1.76065 1.35851 1.33528 0.91168 0.90890 0.91061 0.84637 0.86022 0.83056 0.96416 0.96421 0.92546 0.84812 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.79 36.01 0.35 -0.59 16 2 C -0.11 -1.26 5.89 -104.52 -0.62 -1.88 16 3 C -0.07 -0.91 9.30 -39.53 -0.37 -1.28 16 4 C -0.06 -0.83 4.95 -104.67 -0.52 -1.35 16 5 C 0.14 2.34 2.98 -68.86 -0.21 2.13 16 6 H 0.09 1.55 7.99 -51.93 -0.42 1.13 16 7 N -0.84 -13.96 9.02 -5.65 -0.05 -14.01 16 8 C -0.04 -0.82 3.66 -27.88 -0.10 -0.92 16 9 C -0.53 -13.52 9.10 -34.44 -0.31 -13.84 16 10 H 0.08 2.06 7.39 -52.49 -0.39 1.67 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -26.13 13.96 55.43 0.77 -25.35 16 13 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 17 C -0.05 -0.71 8.99 -39.18 -0.35 -1.07 16 18 C -0.06 -0.76 5.75 -106.69 -0.61 -1.38 16 19 C 0.27 3.91 14.87 -22.47 -0.33 3.57 16 20 N -0.43 -6.90 18.54 41.84 0.78 -6.12 16 21 C 0.14 1.63 6.68 -38.71 -0.26 1.37 16 22 O -0.49 -5.15 11.98 -18.81 -0.23 -5.37 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 25 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.14 1.52 8.03 -52.49 -0.42 1.10 16 27 H 0.33 5.12 7.34 -39.29 -0.29 4.83 16 28 H 0.35 6.31 7.90 -39.29 -0.31 6.00 16 29 H 0.02 0.38 7.58 -51.93 -0.39 -0.02 16 30 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.13 1.84 6.66 -52.49 -0.35 1.49 16 33 H 0.39 2.40 9.06 45.56 0.41 2.81 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -30.17 290.36 -5.37 -35.54 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.93 Total: 8.36 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.43 Total: -13.37 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 1.50 Total: -45.49 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.23 Total: -5.37 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.17 -5.37 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.394 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds