Wall clock time and date at job start Mon Mar 30 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38154 * 119.95034 * 2 1 4 4 C 1.38471 * 120.38917 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.85088 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47521 * 20.00143 * 5 4 3 7 7 N 1.46908 * 109.47079 * 140.00179 * 5 4 3 8 8 C 1.52996 * 109.47310 * 259.99913 * 5 4 3 9 9 C 1.50702 * 109.47159 * 174.99934 * 8 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.37866 * 120.29798 * 0.25132 * 4 3 2 18 18 C 1.39676 * 119.89723 * 359.45517 * 17 4 3 19 19 C 1.43203 * 120.19211 * 180.24855 * 18 17 4 20 20 N 4.81107 * 134.88758 * 179.97438 * 2 1 3 21 21 C 1.38600 * 119.95406 * 179.97438 * 2 1 3 22 22 O 1.35701 * 120.15131 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.47145 * 90.00433 * 1 2 3 24 24 H 1.09000 * 109.47144 * 210.00128 * 1 2 3 25 25 H 1.08994 * 109.47299 * 330.00346 * 1 2 3 26 26 H 1.08002 * 119.80508 * 359.97438 * 3 2 1 27 27 H 1.00902 * 111.00072 * 59.99841 * 7 5 4 28 28 H 1.00901 * 110.99845 * 183.95568 * 7 5 4 29 29 H 1.09004 * 109.47066 * 55.00137 * 8 5 4 30 30 H 1.08994 * 109.47405 * 294.99967 * 8 5 4 31 31 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 32 32 H 1.07995 * 120.05279 * 179.72765 * 17 4 3 33 33 H 0.96705 * 113.99716 * 90.00227 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1970 0.0000 4 6 3.5814 1.2076 0.0005 5 6 4.3215 2.5204 -0.0001 6 1 3.6586 3.3114 0.3507 7 7 5.4859 2.4265 0.8907 8 6 4.7907 2.8407 -1.4206 9 6 5.4223 4.2088 -1.4445 10 1 5.4834 4.7914 -0.5372 11 6 5.9279 4.7142 -2.6236 12 7 6.4840 5.9058 -2.6433 13 14 5.8229 3.7063 -4.1928 14 1 4.5514 4.0149 -4.8952 15 1 6.9696 4.0423 -5.0746 16 1 5.8643 2.2605 -3.8563 17 6 4.2860 0.0227 -0.0041 18 6 3.6011 -1.1946 0.0021 19 6 4.3267 -2.4292 0.0026 20 7 4.9023 -3.4086 0.0015 21 6 2.1991 -1.2009 0.0005 22 8 1.5227 -2.3773 0.0016 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6528 2.1301 -0.0004 27 1 6.1162 1.6996 0.5866 28 1 5.9622 3.3134 0.9579 29 1 3.9369 2.8228 -2.0980 30 1 5.5219 2.0974 -1.7380 31 1 6.8393 6.2614 -3.4728 32 1 5.3659 0.0356 -0.0082 33 1 1.3264 -2.7189 -0.8816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:13 Heat of formation + Delta-G solvation = -24.794631 kcal Electronic energy + Delta-G solvation = -16994.644866 eV Core-core repulsion = 14212.056728 eV Total energy + Delta-G solvation = -2782.588139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26216 -38.62314 -37.66218 -36.43684 -34.48535 -33.59556 -31.09052 -30.43023 -27.73856 -26.05060 -24.90684 -23.18468 -20.87157 -19.77350 -19.21638 -18.54324 -17.53114 -16.80444 -16.39612 -16.10841 -15.22614 -15.04921 -14.91589 -14.63703 -14.41362 -14.13395 -14.05032 -13.97556 -13.89051 -13.36298 -13.23060 -12.92118 -12.72880 -12.41292 -12.25334 -11.92287 -11.74209 -11.53540 -11.25449 -10.77149 -9.83753 -9.60579 -9.24322 -8.28092 -6.31311 -0.28505 0.24660 1.34619 1.37903 1.46852 1.54800 1.86990 2.35156 2.68774 2.79343 3.07789 3.14005 3.69834 3.83204 4.08162 4.28979 4.33982 4.47540 4.54103 4.74561 4.85747 4.91952 4.94466 5.05195 5.23419 5.30161 5.33581 5.42314 5.62053 5.67148 5.76587 6.24777 6.36619 6.40486 6.69770 6.73325 6.77423 7.33847 8.87488 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023861 B = 0.006043 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.203598 B = 4632.277470 C = 4892.267924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.067 4.067 4 C -0.075 4.075 5 C 0.145 3.855 6 H 0.082 0.918 7 N -0.835 5.835 8 C -0.035 4.035 9 C -0.521 4.521 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.939 3.061 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.250 1.250 17 C -0.054 4.054 18 C -0.068 4.068 19 C 0.283 3.717 20 N -0.459 5.459 21 C 0.151 3.849 22 O -0.496 6.496 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.334 0.666 28 H 0.346 0.654 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.132 0.868 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -12.554 2.817 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.076 4.076 5 C 0.033 3.967 6 H 0.100 0.900 7 N -0.363 5.363 8 C -0.074 4.074 9 C -0.559 4.559 10 H 0.064 0.936 11 C -0.187 4.187 12 N -0.587 5.587 13 Si 0.764 3.236 14 H -0.193 1.193 15 H -0.218 1.218 16 H -0.174 1.174 17 C -0.075 4.075 18 C -0.072 4.072 19 C -0.031 4.031 20 N -0.135 5.135 21 C 0.103 3.897 22 O -0.309 6.309 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.168 0.832 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -12.380 -14.093 3.887 19.157 hybrid contribution 0.966 0.705 -2.174 2.481 sum -11.415 -13.388 1.713 17.677 Atomic orbital electron populations 1.20757 0.87768 1.04178 1.03760 1.20284 0.98402 0.90763 1.01220 1.21320 0.92753 0.98881 0.95660 1.19865 0.94305 0.94234 0.99151 1.20154 0.92533 0.92759 0.91261 0.89975 1.59260 1.12308 1.11808 1.52947 1.20289 0.96314 0.95066 0.95696 1.21356 1.37476 1.01455 0.95644 0.93594 1.25857 0.94539 0.95703 1.02557 1.70047 1.41321 1.18923 1.28420 0.85830 0.77899 0.80407 0.79510 1.19270 1.21754 1.17420 1.20851 1.00409 0.89740 0.96495 1.16368 0.91964 0.86771 1.12107 1.25645 0.92477 0.92506 0.92454 1.81205 1.09715 1.11899 1.10727 1.18131 0.86923 0.86210 0.98401 1.84687 1.75594 1.35189 1.35465 0.89516 0.90403 0.90022 0.83170 0.85322 0.84088 0.95951 0.96470 0.92690 0.85051 0.72726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.79 71.24 0.70 -0.71 16 2 C -0.11 -2.04 5.89 -19.80 -0.12 -2.16 16 3 C -0.07 -1.52 9.30 22.31 0.21 -1.31 16 4 C -0.07 -2.08 4.95 -19.90 -0.10 -2.18 16 5 C 0.14 4.88 2.98 44.16 0.13 5.01 16 6 H 0.08 2.84 7.99 -2.39 -0.02 2.82 16 7 N -0.83 -27.55 9.02 -171.80 -1.55 -29.10 16 8 C -0.03 -1.43 3.66 29.85 0.11 -1.32 16 9 C -0.52 -26.99 9.10 25.60 0.23 -26.75 16 10 H 0.05 2.59 7.39 -2.91 -0.02 2.57 16 11 C 0.01 0.60 5.47 84.66 0.46 1.06 16 12 N -0.95 -56.49 13.96 21.45 0.30 -56.19 16 13 Si 0.94 42.16 27.47 68.60 1.88 44.04 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 17 C -0.05 -1.45 8.99 22.53 0.20 -1.24 16 18 C -0.07 -1.69 5.75 -21.21 -0.12 -1.81 16 19 C 0.28 7.86 14.87 88.33 1.31 9.17 16 20 N -0.46 -14.38 18.54 19.00 0.35 -14.02 16 21 C 0.15 3.18 6.68 22.84 0.15 3.33 16 22 O -0.50 -8.67 11.98 -90.21 -1.08 -9.75 16 23 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 0.98 7.53 -2.39 -0.02 0.96 16 25 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.15 2.91 8.03 -2.91 -0.02 2.89 16 27 H 0.33 10.30 7.34 -89.69 -0.66 9.65 16 28 H 0.35 12.52 7.90 -89.69 -0.71 11.81 16 29 H 0.02 0.91 7.58 -2.38 -0.02 0.89 16 30 H 0.02 0.71 7.19 -2.39 -0.02 0.69 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.13 3.48 6.66 -2.91 -0.02 3.46 16 33 H 0.41 3.52 9.06 -74.05 -0.67 2.85 16 Total: -1.00 -64.78 290.36 2.16 -62.62 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.92 Total: 21.31 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 3.17 Total: -18.92 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -0.90 Total: -99.31 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.08 Total: -9.75 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -64.78 2.16 -62.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.821 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds