Wall clock time and date at job start Mon Mar 30 2020 04:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46739 * 125.62190 * 2 1 4 4 C 1.50818 * 106.24879 * 179.97438 * 3 2 1 5 5 C 1.37581 * 133.24134 * 180.02562 * 4 3 2 6 6 C 1.38468 * 119.96198 * 179.97438 * 5 4 3 7 7 C 1.38382 * 120.18428 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.83756 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47025 * 160.00245 * 8 7 6 10 10 N 1.46897 * 109.47274 * 39.99385 * 8 7 6 11 11 C 1.50702 * 109.46614 * 279.99977 * 8 7 6 12 12 H 1.07995 * 120.00671 * 5.58608 * 11 8 7 13 13 C 1.37886 * 119.99790 * 185.59482 * 11 8 7 14 14 N 1.31509 * 119.99846 * 195.15574 * 13 11 8 15 15 Si 1.86805 * 119.99929 * 14.87160 * 13 11 8 16 16 H 1.48499 * 109.46941 * 180.28005 * 15 13 11 17 17 H 1.48504 * 109.47182 * 300.28012 * 15 13 11 18 18 H 1.48506 * 109.46940 * 60.27787 * 15 13 11 19 19 C 1.37937 * 120.32550 * 0.27154 * 7 6 5 20 20 C 1.39625 * 119.82332 * 359.46071 * 19 7 6 21 21 C 1.34420 * 125.62623 * 179.97438 * 2 1 3 22 22 O 1.21556 * 124.85119 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.46977 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47391 * 299.97786 * 1 2 3 25 25 H 1.08998 * 109.46936 * 59.98169 * 1 2 3 26 26 H 1.08995 * 110.09551 * 60.80280 * 3 2 1 27 27 H 1.09002 * 110.09753 * 299.19389 * 3 2 1 28 28 H 1.08005 * 120.01813 * 359.95584 * 5 4 3 29 29 H 1.08000 * 119.90692 * 179.97438 * 6 5 4 30 30 H 1.00895 * 110.99926 * 179.13437 * 10 8 7 31 31 H 1.00892 * 111.00474 * 303.09442 * 10 8 7 32 32 H 0.96994 * 120.00573 * 354.60522 * 14 13 11 33 33 H 1.08001 * 120.08981 * 179.70123 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3197 1.1928 0.0000 4 6 3.7425 0.6925 0.0006 5 6 4.9641 1.3254 0.0014 6 6 6.1299 0.5783 0.0024 7 6 6.0703 -0.8043 0.0021 8 6 7.3441 -1.6097 0.0038 9 1 7.1346 -2.6201 0.3548 10 7 8.3238 -0.9747 0.8954 11 6 7.9024 -1.6694 -1.3947 12 1 7.4379 -1.1005 -2.1864 13 6 9.0064 -2.4506 -1.6635 14 7 9.6730 -2.2833 -2.7847 15 14 9.5596 -3.7413 -0.4316 16 1 10.7651 -4.4362 -0.9503 17 1 9.8840 -3.0853 0.8607 18 1 8.4694 -4.7284 -0.2256 19 6 4.8508 -1.4488 -0.0048 20 6 3.6709 -0.7024 -0.0001 21 6 2.2480 -1.0926 0.0005 22 8 1.8418 -2.2383 0.0014 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5135 0.8901 25 1 -0.3633 0.5141 -0.8898 26 1 2.1319 1.7880 0.8935 27 1 2.1320 1.7881 -0.8936 28 1 5.0137 2.4043 0.0009 29 1 7.0884 1.0760 0.0025 30 1 9.1823 -1.5040 0.9247 31 1 8.4971 -0.0196 0.6205 32 1 9.3443 -1.6663 -3.4570 33 1 4.8088 -2.5280 -0.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:12 Heat of formation + Delta-G solvation = 6.558078 kcal Electronic energy + Delta-G solvation = -17258.273106 eV Core-core repulsion = 14477.044523 eV Total energy + Delta-G solvation = -2781.228583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87237 -38.15974 -36.22578 -34.64502 -32.12307 -30.96940 -30.67768 -27.28014 -26.69760 -25.44890 -22.56201 -22.23690 -20.27213 -19.21995 -17.77415 -16.56362 -16.24775 -16.09907 -15.93943 -14.65042 -14.14984 -13.93683 -13.77098 -13.34030 -13.26046 -13.22557 -13.00604 -12.46985 -12.35362 -12.27780 -11.62405 -11.51948 -11.25880 -10.70675 -10.19089 -10.08796 -9.70597 -9.37552 -8.96769 -8.56720 -8.53119 -8.26317 -7.58981 -6.55346 -4.31394 1.16251 1.74256 2.84599 3.07758 3.24986 3.35529 3.50323 4.21932 4.28628 4.31495 4.56411 5.09163 5.11294 5.14751 5.15226 5.28735 5.38329 5.50653 5.51595 5.78509 5.82841 6.06004 6.10842 6.30889 6.32009 6.65344 6.70671 6.82644 6.97567 7.20516 7.36028 7.70916 8.12943 8.24679 8.29231 8.42208 8.74716 9.41568 10.75158 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.005857 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.754510 B = 4779.760175 C = 5104.372689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.626 5.626 3 C 0.151 3.849 4 C -0.114 4.114 5 C -0.104 4.104 6 C -0.077 4.077 7 C -0.023 4.023 8 C 0.209 3.791 9 H 0.047 0.953 10 N -0.856 5.856 11 C -0.628 4.628 12 H 0.058 0.942 13 C 0.032 3.968 14 N -0.896 5.896 15 Si 1.047 2.953 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.280 1.280 19 C -0.047 4.047 20 C -0.163 4.163 21 C 0.562 3.438 22 O -0.532 6.532 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.333 0.667 31 H 0.324 0.676 32 H 0.269 0.731 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 8.960 6.460 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.360 5.360 3 C 0.028 3.972 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.024 4.024 8 C 0.100 3.900 9 H 0.065 0.935 10 N -0.388 5.388 11 C -0.667 4.667 12 H 0.076 0.924 13 C -0.175 4.175 14 N -0.530 5.530 15 Si 0.875 3.125 16 H -0.209 1.209 17 H -0.198 1.198 18 H -0.206 1.206 19 C -0.067 4.067 20 C -0.166 4.166 21 C 0.353 3.647 22 O -0.410 6.410 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.320 7.085 7.329 15.990 hybrid contribution -0.698 1.337 -1.432 2.080 sum -13.018 8.422 5.897 16.588 Atomic orbital electron populations 1.21483 0.76782 1.03889 1.01423 1.47764 1.06213 1.07301 1.74760 1.20325 0.86526 0.87607 1.02696 1.20182 0.94086 0.94418 1.02839 1.20165 0.90275 0.99482 1.02297 1.21107 0.97685 0.93786 0.96957 1.20105 0.95100 0.93939 0.93243 1.18346 0.86505 0.92626 0.92528 0.93503 1.59849 1.16001 1.06617 1.56343 1.22617 1.16873 1.32384 0.94844 0.92408 1.25872 0.93087 0.98103 1.00436 1.70847 1.36390 1.37047 1.08681 0.83967 0.76879 0.76607 0.75057 1.20881 1.19836 1.20604 1.20713 0.89671 1.00147 0.96124 1.20163 0.93337 0.94861 1.08250 1.18429 0.86538 0.84329 0.75445 1.90744 1.79744 1.20021 1.50467 0.89729 0.91975 0.91974 0.89423 0.89434 0.85907 0.85296 0.85168 0.86402 0.92037 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 11.25 59.85 0.67 1.68 16 2 N -0.63 -8.42 3.37 -184.04 -0.62 -9.04 16 3 C 0.15 1.71 7.38 -5.01 -0.04 1.67 16 4 C -0.11 -1.71 6.38 -104.27 -0.66 -2.38 16 5 C -0.10 -1.53 10.03 -39.74 -0.40 -1.93 16 6 C -0.08 -1.36 9.27 -39.44 -0.37 -1.73 16 7 C -0.02 -0.48 4.89 -104.68 -0.51 -0.99 16 8 C 0.21 4.81 2.48 -70.01 -0.17 4.64 16 9 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 10 N -0.86 -17.95 9.09 -6.65 -0.06 -18.01 16 11 C -0.63 -16.79 9.03 -34.44 -0.31 -17.10 16 12 H 0.06 1.70 7.99 -52.49 -0.42 1.28 16 13 C 0.03 0.87 5.41 -17.82 -0.10 0.78 16 14 N -0.90 -26.48 13.69 55.43 0.76 -25.72 16 15 Si 1.05 24.03 26.43 -169.99 -4.49 19.54 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -5.64 5.62 56.52 0.32 -5.32 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.05 -0.95 9.71 -39.17 -0.38 -1.33 16 20 C -0.16 -2.97 6.26 -105.05 -0.66 -3.63 16 21 C 0.56 10.09 7.97 -12.63 -0.10 9.99 16 22 O -0.53 -11.18 17.47 5.32 0.09 -11.08 16 23 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.13 2.16 6.59 -52.49 -0.35 1.81 16 30 H 0.33 7.11 5.48 -39.29 -0.22 6.90 16 31 H 0.32 6.36 7.21 -39.30 -0.28 6.07 16 32 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 33 H 0.13 2.59 8.03 -52.49 -0.42 2.17 16 LS Contribution 278.95 15.07 4.20 4.20 Total: -1.00 -32.03 278.95 -6.92 -38.96 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -3.78 Total: 11.48 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.02 Total: -10.33 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.08 Total: -52.77 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.49 Total: 19.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.03 -6.92 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.514 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds