Wall clock time and date at job start Mon Mar 30 2020 04:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46739 * 125.62190 * 2 1 4 4 C 1.50818 * 106.24879 * 179.97438 * 3 2 1 5 5 C 1.37581 * 133.24134 * 180.02562 * 4 3 2 6 6 C 1.38468 * 119.96198 * 179.97438 * 5 4 3 7 7 C 1.38382 * 120.18428 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.83756 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47025 * 160.00245 * 8 7 6 10 10 N 1.46897 * 109.47274 * 39.99385 * 8 7 6 11 11 C 1.50702 * 109.46614 * 279.99977 * 8 7 6 12 12 H 1.07995 * 120.00671 * 5.58608 * 11 8 7 13 13 C 1.37886 * 119.99790 * 185.59482 * 11 8 7 14 14 N 1.31509 * 119.99846 * 195.15574 * 13 11 8 15 15 Si 1.86805 * 119.99929 * 14.87160 * 13 11 8 16 16 H 1.48499 * 109.46941 * 180.28005 * 15 13 11 17 17 H 1.48504 * 109.47182 * 300.28012 * 15 13 11 18 18 H 1.48506 * 109.46940 * 60.27787 * 15 13 11 19 19 C 1.37937 * 120.32550 * 0.27154 * 7 6 5 20 20 C 1.39625 * 119.82332 * 359.46071 * 19 7 6 21 21 C 1.34420 * 125.62623 * 179.97438 * 2 1 3 22 22 O 1.21556 * 124.85119 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.46977 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47391 * 299.97786 * 1 2 3 25 25 H 1.08998 * 109.46936 * 59.98169 * 1 2 3 26 26 H 1.08995 * 110.09551 * 60.80280 * 3 2 1 27 27 H 1.09002 * 110.09753 * 299.19389 * 3 2 1 28 28 H 1.08005 * 120.01813 * 359.95584 * 5 4 3 29 29 H 1.08000 * 119.90692 * 179.97438 * 6 5 4 30 30 H 1.00895 * 110.99926 * 179.13437 * 10 8 7 31 31 H 1.00892 * 111.00474 * 303.09442 * 10 8 7 32 32 H 0.96994 * 120.00573 * 354.60522 * 14 13 11 33 33 H 1.08001 * 120.08981 * 179.70123 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3197 1.1928 0.0000 4 6 3.7425 0.6925 0.0006 5 6 4.9641 1.3254 0.0014 6 6 6.1299 0.5783 0.0024 7 6 6.0703 -0.8043 0.0021 8 6 7.3441 -1.6097 0.0038 9 1 7.1346 -2.6201 0.3548 10 7 8.3238 -0.9747 0.8954 11 6 7.9024 -1.6694 -1.3947 12 1 7.4379 -1.1005 -2.1864 13 6 9.0064 -2.4506 -1.6635 14 7 9.6730 -2.2833 -2.7847 15 14 9.5596 -3.7413 -0.4316 16 1 10.7651 -4.4362 -0.9503 17 1 9.8840 -3.0853 0.8607 18 1 8.4694 -4.7284 -0.2256 19 6 4.8508 -1.4488 -0.0048 20 6 3.6709 -0.7024 -0.0001 21 6 2.2480 -1.0926 0.0005 22 8 1.8418 -2.2383 0.0014 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5135 0.8901 25 1 -0.3633 0.5141 -0.8898 26 1 2.1319 1.7880 0.8935 27 1 2.1320 1.7881 -0.8936 28 1 5.0137 2.4043 0.0009 29 1 7.0884 1.0760 0.0025 30 1 9.1823 -1.5040 0.9247 31 1 8.4971 -0.0196 0.6205 32 1 9.3443 -1.6663 -3.4570 33 1 4.8088 -2.5280 -0.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:12 Heat of formation + Delta-G solvation = -17.603446 kcal Electronic energy + Delta-G solvation = -17259.320828 eV Core-core repulsion = 14477.044523 eV Total energy + Delta-G solvation = -2782.276306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11444 -39.57444 -37.62101 -36.25339 -34.03603 -32.26248 -32.07695 -28.59906 -27.86469 -27.18034 -23.90517 -23.78237 -21.66430 -20.61954 -19.83133 -17.81097 -17.64882 -17.43650 -17.14920 -16.07049 -15.66112 -15.48041 -15.16045 -14.99625 -14.47295 -14.44936 -14.33913 -14.05764 -13.90669 -13.26378 -13.14145 -12.91284 -12.69953 -12.36417 -11.99585 -11.76348 -11.38031 -11.05588 -10.67658 -10.16832 -9.80425 -9.64991 -9.43382 -8.68022 -6.52319 -0.19953 0.39817 1.39712 1.48873 1.67566 1.72860 1.83934 2.37267 2.83469 2.97754 3.10204 3.43223 3.91300 3.96716 4.26202 4.32290 4.39587 4.44310 4.47005 4.54193 4.67630 4.70056 4.83654 4.99205 5.02737 5.12602 5.36433 5.58445 5.60133 5.77742 5.85728 5.89832 5.96084 6.36649 6.49339 6.81004 6.98629 7.28430 8.52907 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.005857 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.754510 B = 4779.760175 C = 5104.372689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.614 5.614 3 C 0.150 3.850 4 C -0.095 4.095 5 C -0.089 4.089 6 C -0.083 4.083 7 C -0.056 4.056 8 C 0.215 3.785 9 H 0.035 0.965 10 N -0.842 5.842 11 C -0.623 4.623 12 H 0.018 0.982 13 C -0.015 4.015 14 N -0.928 5.928 15 Si 1.085 2.915 16 H -0.286 1.286 17 H -0.234 1.234 18 H -0.276 1.276 19 C -0.074 4.074 20 C -0.189 4.189 21 C 0.547 3.453 22 O -0.582 6.582 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.174 0.826 29 H 0.136 0.864 30 H 0.332 0.668 31 H 0.334 0.666 32 H 0.254 0.746 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 11.972 8.100 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.346 5.346 3 C 0.029 3.971 4 C -0.096 4.096 5 C -0.106 4.106 6 C -0.102 4.102 7 C -0.057 4.057 8 C 0.104 3.896 9 H 0.053 0.947 10 N -0.374 5.374 11 C -0.663 4.663 12 H 0.036 0.964 13 C -0.215 4.215 14 N -0.563 5.563 15 Si 0.906 3.094 16 H -0.212 1.212 17 H -0.158 1.158 18 H -0.201 1.201 19 C -0.093 4.093 20 C -0.192 4.192 21 C 0.337 3.663 22 O -0.465 6.465 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.191 0.809 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.063 0.937 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.018 10.177 8.982 19.513 hybrid contribution -0.340 0.548 -1.984 2.086 sum -14.358 10.725 6.998 19.239 Atomic orbital electron populations 1.21817 0.74262 1.03719 1.04405 1.47997 1.07726 1.06602 1.72299 1.20729 0.83093 0.86856 1.06417 1.20720 0.96541 0.92781 0.99582 1.20579 0.88711 1.01658 0.99697 1.21314 0.99584 0.92641 0.96673 1.19940 0.93886 0.95333 0.96543 1.18139 0.88166 0.93082 0.90179 0.94714 1.59765 1.15488 1.06988 1.55125 1.22771 1.16477 1.31018 0.96007 0.96354 1.27203 0.93530 0.99512 1.01265 1.70975 1.37669 1.38056 1.09644 0.83514 0.76451 0.74665 0.74771 1.21195 1.15820 1.20133 1.20621 0.90990 0.99410 0.98325 1.20372 0.93096 0.96756 1.08989 1.18603 0.87006 0.84816 0.75870 1.90704 1.80358 1.22063 1.53333 0.91610 0.88726 0.89083 0.85068 0.85649 0.80865 0.84588 0.85351 0.85373 0.93722 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 11.25 127.77 1.44 2.93 16 2 N -0.61 -14.45 3.37 -854.66 -2.88 -17.33 16 3 C 0.15 2.53 7.38 85.63 0.63 3.16 16 4 C -0.09 -2.51 6.38 -19.64 -0.13 -2.64 16 5 C -0.09 -2.25 10.03 22.17 0.22 -2.03 16 6 C -0.08 -2.84 9.27 22.36 0.21 -2.63 16 7 C -0.06 -2.37 4.89 -19.90 -0.10 -2.47 16 8 C 0.21 10.07 2.48 43.43 0.11 10.17 16 9 H 0.03 1.70 6.70 -2.39 -0.02 1.69 16 10 N -0.84 -34.70 9.09 -174.95 -1.59 -36.29 16 11 C -0.62 -34.62 9.03 25.60 0.23 -34.39 16 12 H 0.02 1.13 7.99 -2.91 -0.02 1.10 16 13 C -0.02 -0.86 5.41 84.66 0.46 -0.40 16 14 N -0.93 -56.82 13.69 21.45 0.29 -56.52 16 15 Si 1.08 48.95 26.43 68.60 1.81 50.77 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.23 -9.07 5.62 99.48 0.56 -8.51 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 C -0.07 -3.11 9.71 22.53 0.22 -2.89 16 20 C -0.19 -6.83 6.26 -20.14 -0.13 -6.96 16 21 C 0.55 19.42 7.97 86.75 0.69 20.11 16 22 O -0.58 -25.39 17.47 -3.89 -0.07 -25.46 16 23 H 0.06 1.30 7.64 -2.39 -0.02 1.28 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.14 4.33 6.59 -2.91 -0.02 4.31 16 30 H 0.33 13.72 5.48 -89.70 -0.49 13.23 16 31 H 0.33 12.75 7.21 -89.70 -0.65 12.10 16 32 H 0.25 15.81 8.73 -92.71 -0.81 15.01 16 33 H 0.10 4.63 8.03 -2.91 -0.02 4.61 16 Total: -1.00 -75.94 278.95 1.25 -74.69 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.18 Total: 28.17 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 3.86 Total: -18.03 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.17 Total: -110.15 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.81 Total: 50.77 kcal Total: -75.94 1.25 -74.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.087 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds