Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21297 * 119.99928 * 2 1 4 4 N 1.34772 * 119.99927 * 180.02562 * 2 1 3 5 5 C 1.47058 * 120.62059 * 353.86215 * 4 2 1 6 6 C 1.53555 * 108.20178 * 225.05732 * 5 4 2 7 7 H 1.08997 * 109.74239 * 183.63200 * 6 5 4 8 8 C 1.50698 * 109.71370 * 63.01849 * 6 5 4 9 9 H 1.08003 * 120.00002 * 1.22429 * 8 6 5 10 10 C 1.37876 * 120.00384 * 181.22186 * 8 6 5 11 11 N 1.31521 * 119.99498 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00245 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47121 * 60.00144 * 12 10 8 14 14 H 1.48498 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46993 * 299.99917 * 12 10 8 16 16 N 1.47042 * 108.22980 * 303.33518 * 6 5 4 17 17 C 1.40111 * 118.82413 * 45.11018 * 16 6 5 18 18 C 1.38617 * 120.27804 * 163.43146 * 17 16 6 19 19 C 1.38281 * 119.87138 * 179.88307 * 18 17 16 20 20 C 1.38281 * 120.23697 * 0.22809 * 19 18 17 21 21 C 1.38290 * 120.23968 * 359.51271 * 20 19 18 22 22 C 1.38555 * 119.87529 * 0.55725 * 21 20 19 23 23 H 1.09000 * 109.46810 * 174.46081 * 1 2 3 24 24 H 1.08998 * 109.46753 * 294.45869 * 1 2 3 25 25 H 1.08998 * 109.46671 * 54.46060 * 1 2 3 26 26 H 1.08998 * 109.71788 * 105.38292 * 5 4 2 27 27 H 1.09001 * 109.71775 * 344.72879 * 5 4 2 28 28 H 0.97002 * 119.99142 * 180.02562 * 11 10 8 29 29 H 0.97000 * 120.58678 * 225.12151 * 16 6 5 30 30 H 1.07997 * 120.06672 * 359.90473 * 18 17 16 31 31 H 1.08003 * 119.87937 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.87900 * 179.76554 * 20 19 18 33 33 H 1.07994 * 120.06510 * 180.28663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4657 -2.4450 0.1342 6 6 2.2234 -3.3141 1.1484 7 1 1.7505 -4.2936 1.2198 8 6 2.2133 -2.6452 2.4988 9 1 1.7004 -1.7040 2.6314 10 6 2.8589 -3.2346 3.5650 11 7 3.4839 -4.3805 3.4034 12 14 2.8458 -2.4058 5.2390 13 1 1.4442 -2.2563 5.7064 14 1 3.6044 -3.2363 6.2085 15 1 3.4778 -1.0662 5.1330 16 7 3.6090 -3.4653 0.6802 17 6 4.2916 -2.3342 0.2137 18 6 5.6722 -2.3525 0.0901 19 6 6.3371 -1.2322 -0.3735 20 6 5.6302 -0.0923 -0.7097 21 6 4.2524 -0.0678 -0.5943 22 6 3.5788 -1.1857 -0.1292 23 1 -0.3633 -1.0229 -0.0992 24 1 -0.3633 0.4255 0.9354 25 1 -0.3632 0.5973 -0.8362 26 1 1.4318 -2.9510 -0.8306 27 1 0.4518 -2.2632 0.4908 28 1 3.9377 -4.7953 4.1536 29 1 4.0428 -4.3328 0.6939 30 1 6.2273 -3.2402 0.3551 31 1 7.4128 -1.2462 -0.4694 32 1 6.1558 0.7807 -1.0676 33 1 3.7027 0.8224 -0.8621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260689656.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = -7.895918 kcal Electronic energy + Delta-G solvation = -18300.636328 eV Core-core repulsion = 15518.780972 eV Total energy + Delta-G solvation = -2781.855356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.76137 -39.39628 -37.61712 -35.42738 -34.10852 -32.05783 -31.24456 -29.76955 -27.90014 -26.93378 -23.90301 -23.73326 -21.72771 -20.08775 -18.59381 -18.16974 -17.83626 -17.67179 -16.75867 -16.44953 -15.72495 -15.34378 -14.81705 -14.78778 -14.55467 -14.25693 -14.03515 -13.65634 -13.39699 -13.00595 -12.92019 -12.77436 -12.61936 -12.35753 -12.11120 -11.92586 -11.71463 -10.91915 -10.68439 -10.45870 -10.33860 -8.90692 -8.27307 -7.70434 -6.32058 0.58750 0.90047 1.32236 1.36650 1.41367 1.73699 2.11459 2.35411 2.87177 3.22682 3.41088 3.69635 4.18687 4.22982 4.33918 4.38634 4.54548 4.62413 4.66908 4.70391 4.77480 4.81384 5.02940 5.19634 5.26492 5.51121 5.55161 5.67535 5.82544 5.88371 6.08754 6.29534 6.54723 6.62824 6.95876 7.21143 7.32526 7.43197 8.83889 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.011296 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.123547 B = 2478.088240 C = 3156.598864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.494 3.506 3 O -0.584 6.584 4 N -0.533 5.533 5 C 0.096 3.904 6 C 0.252 3.748 7 H 0.057 0.943 8 C -0.537 4.537 9 H 0.042 0.958 10 C 0.040 3.960 11 N -0.895 5.895 12 Si 0.935 3.065 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.294 1.294 16 N -0.717 5.717 17 C 0.202 3.798 18 C -0.207 4.207 19 C -0.093 4.093 20 C -0.185 4.185 21 C -0.121 4.121 22 C 0.052 3.948 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.261 0.739 29 H 0.391 0.609 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 2.058 -7.691 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.286 3.714 3 O -0.466 6.466 4 N -0.255 5.255 5 C -0.027 4.027 6 C 0.149 3.851 7 H 0.075 0.925 8 C -0.576 4.576 9 H 0.061 0.939 10 C -0.162 4.162 11 N -0.533 5.533 12 Si 0.763 3.237 13 H -0.188 1.188 14 H -0.208 1.208 15 H -0.221 1.221 16 N -0.342 5.342 17 C 0.093 3.907 18 C -0.231 4.231 19 C -0.112 4.112 20 C -0.205 4.205 21 C -0.142 4.142 22 C -0.045 4.045 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.224 0.776 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.017 2.423 -7.512 8.450 hybrid contribution 0.521 -0.088 1.429 1.523 sum -2.496 2.335 -6.083 6.978 Atomic orbital electron populations 1.22001 0.87522 1.06516 1.06220 1.21811 0.92702 0.82014 0.74825 1.90515 1.71304 1.32648 1.52123 1.45617 1.04705 1.07999 1.67193 1.22614 0.97389 0.82775 0.99889 1.19096 0.80123 0.95638 0.90266 0.92542 1.21530 1.34330 1.06809 0.94916 0.93936 1.25438 0.94540 0.95051 1.01204 1.69933 1.34038 1.17136 1.32167 0.85982 0.78590 0.77994 0.81183 1.18842 1.20777 1.22096 1.45349 1.15033 1.06357 1.67458 1.17858 0.91568 0.88371 0.92921 1.20651 0.91559 1.00912 1.09929 1.21063 1.00234 0.92066 0.97879 1.20940 0.93104 0.99380 1.07122 1.21503 0.95492 0.97701 0.99474 1.17657 0.83300 0.96236 1.07351 0.87819 0.88038 0.86722 0.90324 0.86425 0.92953 0.77568 0.86015 0.83949 0.84674 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.95 71.24 0.71 -3.32 16 2 C 0.49 18.56 7.67 87.66 0.67 19.24 16 3 O -0.58 -25.82 14.01 -3.08 -0.04 -25.86 16 4 N -0.53 -21.27 2.63 -628.21 -1.65 -22.92 16 5 C 0.10 3.35 5.60 86.46 0.48 3.84 16 6 C 0.25 11.01 3.16 44.33 0.14 11.15 16 7 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.54 -27.29 8.14 25.60 0.21 -27.08 16 9 H 0.04 2.23 7.75 -2.91 -0.02 2.21 16 10 C 0.04 2.12 5.39 84.65 0.46 2.58 16 11 N -0.89 -47.60 12.78 21.45 0.27 -47.33 16 12 Si 0.94 43.39 29.54 68.60 2.03 45.42 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 16 N -0.72 -31.46 4.82 -319.93 -1.54 -33.01 16 17 C 0.20 8.87 6.33 38.20 0.24 9.11 16 18 C -0.21 -8.20 9.94 22.37 0.22 -7.97 16 19 C -0.09 -3.26 10.04 22.29 0.22 -3.04 16 20 C -0.18 -6.74 10.04 22.29 0.22 -6.51 16 21 C -0.12 -5.10 8.87 22.36 0.20 -4.90 16 22 C 0.05 2.30 6.23 38.14 0.24 2.54 16 23 H 0.10 2.08 5.48 -2.39 -0.01 2.07 16 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.12 3.42 5.63 -2.39 -0.01 3.40 16 28 H 0.26 13.57 8.31 -92.71 -0.77 12.79 16 29 H 0.39 16.88 8.90 -92.71 -0.83 16.06 16 30 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.14 5.95 5.32 -2.92 -0.02 5.93 16 Total: -1.00 -63.90 274.59 3.39 -60.50 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.31 Total: 27.56 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.02 Total: -4.37 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -2.92 Total: -103.25 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.90 3.39 -60.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689656.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.607 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds