Wall clock time and date at job start Mon Mar 30 2020 04:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.45496 * 2 1 4 4 C 1.51134 * 110.51474 * 122.60814 * 2 1 3 5 5 C 1.37673 * 132.84864 * 298.94862 * 4 2 1 6 6 C 1.38403 * 119.91055 * 180.19823 * 5 4 2 7 7 C 1.50703 * 120.08505 * 179.74630 * 6 5 4 8 8 H 1.09002 * 109.47318 * 19.72120 * 7 6 5 9 9 N 1.46896 * 109.46929 * 139.71985 * 7 6 5 10 10 C 1.50703 * 109.47062 * 259.72054 * 7 6 5 11 11 H 1.08001 * 119.99652 * 335.37414 * 10 7 6 12 12 C 1.37867 * 119.99867 * 155.37120 * 10 7 6 13 13 N 1.31518 * 120.00581 * 355.23511 * 12 10 7 14 14 Si 1.86807 * 120.00018 * 175.23610 * 12 10 7 15 15 H 1.48495 * 109.46911 * 59.99770 * 14 12 10 16 16 H 1.48493 * 109.47396 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46738 * 300.00156 * 14 12 10 18 18 C 1.38304 * 119.82625 * 359.46607 * 6 5 4 19 19 C 1.37939 * 120.37380 * 0.25489 * 18 6 5 20 20 C 1.38901 * 106.34155 * 118.64174 * 4 2 1 21 21 N 1.39529 * 110.23189 * 0.02562 * 20 4 2 22 22 C 1.34380 * 112.24769 * 359.97438 * 21 20 4 23 23 O 1.21277 * 126.44582 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46766 * 297.38721 * 1 2 3 25 25 H 1.08997 * 109.47473 * 57.39166 * 1 2 3 26 26 H 1.09001 * 109.47026 * 177.39355 * 1 2 3 27 27 H 1.08001 * 120.04820 * 359.91246 * 5 4 2 28 28 H 1.00900 * 111.00372 * 55.56910 * 9 7 6 29 29 H 1.00904 * 111.00044 * 179.51345 * 9 7 6 30 30 H 0.97003 * 119.99537 * 5.21871 * 13 12 10 31 31 H 1.07997 * 119.80931 * 180.23511 * 18 6 5 32 32 H 1.08001 * 119.93010 * 179.97438 * 19 18 6 33 33 H 0.97000 * 123.88098 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0597 -0.7628 1.1924 5 6 1.9302 -0.5836 2.5512 6 6 2.5468 -1.4621 3.4251 7 6 2.4124 -1.2663 4.9133 8 1 1.5479 -0.6355 5.1202 9 7 2.2338 -2.5708 5.5646 10 6 3.6566 -0.6044 5.4472 11 1 4.5912 -0.7024 4.9149 12 6 3.6016 0.1263 6.6150 13 7 2.4471 0.3245 7.2131 14 14 5.1669 0.8351 7.3480 15 1 5.7937 1.7633 6.3731 16 1 4.8400 1.5725 8.5947 17 1 6.1113 -0.2679 7.6589 18 6 3.2818 -2.5235 2.9289 19 6 3.4082 -2.7085 1.5679 20 6 2.7950 -1.8248 0.6817 21 7 2.7760 -1.7983 -0.7132 22 6 2.0607 -0.7668 -1.1928 23 8 1.8749 -0.5003 -2.3612 24 1 -0.3633 0.4728 0.9125 25 1 -0.3634 0.5538 -0.8656 26 1 -0.3633 -1.0266 -0.0467 27 1 1.3521 0.2441 2.9349 28 1 2.9874 -3.1990 5.3288 29 1 2.1492 -2.4671 6.5647 30 1 1.6459 -0.1057 6.8756 31 1 3.7596 -3.2110 3.6110 32 1 3.9841 -3.5395 1.1883 33 1 3.2274 -2.4496 -1.2726 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:21 Heat of formation + Delta-G solvation = -14.836605 kcal Electronic energy + Delta-G solvation = -17322.609743 eV Core-core repulsion = 14540.453416 eV Total energy + Delta-G solvation = -2782.156327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33456 -38.39334 -36.25489 -34.13084 -33.41596 -31.38423 -29.81110 -28.30391 -25.46319 -25.29715 -22.98796 -21.71345 -20.52927 -20.00511 -17.63874 -17.11410 -16.39779 -15.79843 -15.73203 -14.45356 -14.35786 -13.88188 -13.86050 -13.48927 -13.26535 -12.91265 -12.63000 -12.42836 -12.24374 -11.96050 -11.71509 -11.54642 -10.90348 -10.55334 -10.42038 -10.24476 -10.00662 -9.78657 -9.59189 -8.62015 -8.48511 -7.74705 -7.26104 -6.51171 -4.32814 1.55365 1.74348 2.62753 3.13009 3.32980 3.34198 3.53124 4.19271 4.23434 4.39870 4.52550 5.05881 5.16412 5.20988 5.24353 5.47144 5.63433 5.72038 5.76206 5.91801 6.01568 6.10999 6.17268 6.29615 6.43277 6.73447 6.85824 6.91698 6.93928 7.31689 7.48627 7.83043 8.04631 8.14771 8.37866 8.58470 8.63601 9.40214 10.80787 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.005706 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.008977 B = 4905.732768 C = 5019.632161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 H 0.120 0.880 4 C -0.134 4.134 5 C -0.070 4.070 6 C -0.029 4.029 7 C 0.222 3.778 8 H 0.054 0.946 9 N -0.853 5.853 10 C -0.625 4.625 11 H 0.051 0.949 12 C 0.030 3.970 13 N -0.903 5.903 14 Si 1.066 2.934 15 H -0.287 1.287 16 H -0.281 1.281 17 H -0.287 1.287 18 C -0.084 4.084 19 C -0.133 4.133 20 C 0.102 3.898 21 N -0.657 5.657 22 C 0.531 3.469 23 O -0.518 6.518 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.319 0.681 29 H 0.334 0.666 30 H 0.272 0.728 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -3.785 -9.857 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.138 0.862 4 C -0.136 4.136 5 C -0.089 4.089 6 C -0.030 4.030 7 C 0.113 3.887 8 H 0.072 0.928 9 N -0.380 5.380 10 C -0.665 4.665 11 H 0.069 0.931 12 C -0.177 4.177 13 N -0.539 5.539 14 Si 0.894 3.106 15 H -0.214 1.214 16 H -0.207 1.207 17 H -0.214 1.214 18 C -0.103 4.103 19 C -0.154 4.154 20 C 0.007 3.993 21 N -0.300 5.300 22 C 0.319 3.681 23 O -0.394 6.394 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.513 -2.629 -9.697 10.060 hybrid contribution 0.835 -1.076 -1.035 1.711 sum 0.322 -3.705 -10.732 11.358 Atomic orbital electron populations 1.21530 0.90906 1.02789 1.03090 1.20624 0.98496 1.00568 0.90710 0.86237 1.19642 1.02560 0.97524 0.93901 1.20108 0.99526 0.99441 0.89823 1.20222 0.93185 0.92348 0.97283 1.18184 0.97093 0.88187 0.85209 0.92775 1.59653 1.49983 1.14085 1.14284 1.22530 0.95544 1.37887 1.10564 0.93106 1.25877 1.03001 0.94427 0.94386 1.70834 0.99307 1.40926 1.42820 0.83572 0.74131 0.76429 0.76451 1.21360 1.20651 1.21358 1.20664 0.98425 0.98047 0.93203 1.20256 1.03026 0.99616 0.92484 1.17964 1.01200 0.98229 0.81947 1.43601 1.50969 1.29396 1.06007 1.20621 0.77237 0.80602 0.89622 1.90755 1.59916 1.70499 1.18266 0.90756 0.91508 0.92237 0.85911 0.87054 0.85488 0.91621 0.85688 0.86510 0.75543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.29 37.16 0.35 -1.18 16 2 C -0.08 -1.16 3.59 -92.37 -0.33 -1.49 16 3 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 4 C -0.13 -2.14 5.67 -104.37 -0.59 -2.73 16 5 C -0.07 -1.27 9.66 -39.73 -0.38 -1.66 16 6 C -0.03 -0.57 4.94 -104.54 -0.52 -1.09 16 7 C 0.22 5.06 2.71 -70.02 -0.19 4.87 16 8 H 0.05 1.36 6.55 -51.93 -0.34 1.02 16 9 N -0.85 -17.79 9.12 -6.65 -0.06 -17.85 16 10 C -0.63 -15.92 8.57 -34.44 -0.30 -16.21 16 11 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 12 C 0.03 0.78 5.45 -17.82 -0.10 0.68 16 13 N -0.90 -25.05 13.63 55.43 0.76 -24.29 16 14 Si 1.07 23.61 29.91 -169.99 -5.08 18.53 16 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.08 -1.48 9.25 -39.67 -0.37 -1.84 16 19 C -0.13 -2.01 10.07 -39.27 -0.40 -2.41 16 20 C 0.10 1.55 7.11 -83.69 -0.60 0.96 16 21 N -0.66 -8.89 5.88 -9.70 -0.06 -8.95 16 22 C 0.53 7.96 8.04 -10.82 -0.09 7.87 16 23 O -0.52 -8.98 18.03 5.56 0.10 -8.87 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.12 2.17 8.04 -52.49 -0.42 1.75 16 28 H 0.32 6.14 7.18 -39.29 -0.28 5.86 16 29 H 0.33 7.29 9.03 -39.29 -0.35 6.93 16 30 H 0.27 7.49 6.66 -40.82 -0.27 7.21 16 31 H 0.13 2.08 6.59 -52.49 -0.35 1.73 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.41 4.47 8.96 -40.82 -0.37 4.10 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -28.84 283.70 -7.28 -36.12 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -3.70 Total: 15.28 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.51 Total: -14.24 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.64 Total: -51.09 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.10 Total: -8.87 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.53 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.84 -7.28 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.285 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds