Wall clock time and date at job start Mon Mar 30 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.38705 * 2 1 4 4 C 1.53982 * 110.44063 * 237.58222 * 2 1 3 5 5 C 1.51468 * 104.17768 * 241.28610 * 4 2 1 6 6 O 1.21283 * 125.56460 * 179.97438 * 5 4 2 7 7 N 1.34060 * 108.85125 * 359.90139 * 5 4 2 8 8 N 1.39334 * 113.07028 * 0.06486 * 7 5 4 9 9 C 1.38865 * 125.33165 * 180.02562 * 8 7 5 10 10 C 1.39570 * 119.83884 * 179.70363 * 9 8 7 11 11 C 1.36341 * 120.15646 * 179.71941 * 10 9 8 12 12 C 1.40883 * 119.83956 * 0.55218 * 11 10 9 13 13 C 1.41130 * 120.15999 * 179.74512 * 12 11 10 14 14 H 1.08003 * 120.00151 * 154.51688 * 13 12 11 15 15 C 1.39871 * 119.99680 * 334.51609 * 13 12 11 16 16 N 1.30902 * 120.00323 * 343.04840 * 15 13 12 17 17 Si 1.86804 * 119.99819 * 163.04406 * 15 13 12 18 18 H 1.48501 * 109.46672 * 90.00093 * 17 15 13 19 19 H 1.48498 * 109.46986 * 210.00149 * 17 15 13 20 20 H 1.48500 * 109.47333 * 330.00453 * 17 15 13 21 21 C 1.40887 * 119.68779 * 359.72003 * 12 11 10 22 22 C 1.36345 * 119.83386 * 0.02562 * 21 12 11 23 23 H 1.08998 * 109.47391 * 299.30103 * 1 2 3 24 24 H 1.09002 * 109.46866 * 179.30412 * 1 2 3 25 25 H 1.08999 * 109.47328 * 59.30344 * 1 2 3 26 26 H 1.09000 * 110.45891 * 359.96097 * 4 2 1 27 27 H 1.08996 * 110.46224 * 122.54261 * 4 2 1 28 28 H 0.96994 * 123.46096 * 180.08395 * 7 5 4 29 29 H 1.08003 * 119.91810 * 359.97096 * 10 9 8 30 30 H 1.08004 * 120.07749 * 180.27364 * 11 10 9 31 31 H 0.96990 * 120.00265 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.08575 * 179.97438 * 21 12 11 33 33 H 1.08007 * 119.91847 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0677 -0.7735 -1.2180 5 6 2.8584 -1.9150 -0.6130 6 8 3.4516 -2.7702 -1.2357 7 7 2.7966 -1.8244 0.7231 8 7 2.0430 -0.7379 1.1624 9 6 1.8133 -0.4045 2.4907 10 6 1.0429 0.7169 2.8020 11 6 0.8085 1.0470 4.1039 12 6 1.3558 0.2597 5.1361 13 6 1.1220 0.5983 6.4861 14 1 1.1625 -0.1650 7.2492 15 6 0.8377 1.9224 6.8358 16 7 1.1076 2.8926 5.9996 17 14 0.0728 2.3062 8.4963 18 1 1.1474 2.5344 9.4954 19 1 -0.7665 3.5262 8.3845 20 1 -0.7706 1.1631 8.9289 21 6 2.1372 -0.8676 4.8144 22 6 2.3590 -1.1887 3.5080 23 1 -0.3634 0.5029 0.8962 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3634 0.5246 -0.8837 26 1 1.2438 -1.1567 -1.8201 27 1 2.7155 -0.1354 -1.8190 28 1 3.2320 -2.4507 1.3223 29 1 0.6281 1.3223 2.0096 30 1 0.2085 1.9125 4.3433 31 1 0.9102 3.8108 6.2420 32 1 2.5602 -1.4754 5.6006 33 1 2.9575 -2.0529 3.2598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:30 Heat of formation + Delta-G solvation = 31.485328 kcal Electronic energy + Delta-G solvation = -17321.824439 eV Core-core repulsion = 14541.676782 eV Total energy + Delta-G solvation = -2780.147657 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42390 -37.96552 -36.59175 -33.73578 -33.05280 -31.18340 -29.50738 -28.22955 -27.34265 -24.67052 -22.00264 -21.49278 -20.41021 -20.06758 -17.83393 -17.36586 -16.09803 -15.70952 -15.24123 -14.78108 -14.37615 -13.84404 -13.73115 -13.18832 -13.03780 -12.75627 -12.54863 -12.16031 -11.92539 -11.78574 -11.38391 -11.20359 -11.11222 -10.90520 -10.68131 -10.35116 -9.89425 -9.81034 -9.45230 -9.21495 -8.24081 -7.70682 -6.78224 -6.45154 -4.20990 2.45274 2.58875 2.80490 2.90338 3.07277 3.10980 3.19897 3.94284 4.26600 4.54519 4.58596 4.69257 4.98973 5.39030 5.56476 5.61364 5.66863 5.84452 5.96335 6.00392 6.13723 6.36336 6.46357 6.78060 6.91039 6.98204 7.17908 7.38273 7.47502 7.60979 7.95952 8.03205 8.07424 8.21465 8.54700 8.74368 8.88533 8.96526 10.21255 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049081 B = 0.005204 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.346861 B = 5379.430805 C = 5777.023583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.161 4.161 5 C 0.515 3.485 6 O -0.547 6.547 7 N -0.506 5.506 8 N -0.448 5.448 9 C 0.098 3.902 10 C -0.146 4.146 11 C -0.124 4.124 12 C 0.083 3.917 13 C -0.463 4.463 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.803 5.803 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.187 4.187 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.420 0.580 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.279 0.721 32 H 0.096 0.904 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -0.960 -7.788 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.056 3.944 3 H 0.100 0.900 4 C -0.201 4.201 5 C 0.300 3.700 6 O -0.425 6.425 7 N -0.248 5.248 8 N -0.263 5.263 9 C 0.005 3.995 10 C -0.168 4.168 11 C -0.144 4.144 12 C 0.079 3.921 13 C -0.493 4.493 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.429 5.429 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.207 4.207 22 C -0.171 4.171 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.263 0.737 29 H 0.117 0.883 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.761 -1.098 -8.229 8.487 hybrid contribution -0.026 0.005 1.126 1.126 sum -1.788 -1.093 -7.103 7.406 Atomic orbital electron populations 1.22406 0.94504 1.02840 1.03198 1.21361 0.94625 0.95462 0.82905 0.89987 1.22612 1.01626 0.97228 0.98652 1.20116 0.81673 0.86746 0.81495 1.90776 1.47272 1.40185 1.64231 1.44895 1.49082 1.23997 1.06824 1.45407 1.55584 1.22283 1.02977 1.16958 1.05791 0.98727 0.78034 1.20047 1.03197 0.96650 0.96951 1.20938 1.01561 1.01534 0.90359 1.17551 0.89884 0.90974 0.93644 1.19415 1.42780 0.93693 0.93447 0.90675 1.25835 0.93307 0.96098 0.98851 1.69823 1.35773 1.00797 1.36525 0.86366 0.79845 0.78696 0.82118 1.19638 1.20185 1.18582 1.20541 1.04264 1.02111 0.93812 1.19721 1.04622 0.99907 0.92884 0.90284 0.92246 0.91550 0.87234 0.87360 0.73722 0.88265 0.85824 0.91019 0.88626 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.96 37.16 0.33 -1.75 16 2 C 0.16 2.18 3.32 -67.18 -0.22 1.95 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.16 -1.92 6.63 -26.99 -0.18 -2.10 16 5 C 0.52 8.11 8.64 -10.93 -0.09 8.02 16 6 O -0.55 -10.19 18.03 5.55 0.10 -10.09 16 7 N -0.51 -8.20 6.54 31.29 0.20 -7.99 16 8 N -0.45 -7.69 3.80 -51.26 -0.19 -7.89 16 9 C 0.10 1.99 6.59 -83.69 -0.55 1.44 16 10 C -0.15 -3.09 8.54 -39.77 -0.34 -3.43 16 11 C -0.12 -2.99 8.63 -39.26 -0.34 -3.33 16 12 C 0.08 2.09 5.57 -106.80 -0.59 1.50 16 13 C -0.46 -11.87 9.03 -37.87 -0.34 -12.21 16 14 H 0.08 1.86 7.90 -52.48 -0.41 1.45 16 15 C 0.08 1.83 5.15 -17.34 -0.09 1.75 16 16 N -0.80 -20.06 10.96 55.54 0.61 -19.45 16 17 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.19 -4.37 9.74 -39.26 -0.38 -4.75 16 22 C -0.15 -3.17 9.56 -39.77 -0.38 -3.55 16 23 H 0.08 1.09 5.38 -51.93 -0.28 0.81 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.11 1.10 7.72 -51.93 -0.40 0.70 16 27 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.42 6.46 7.59 -183.18 -1.39 5.07 16 29 H 0.10 1.84 5.54 -52.48 -0.29 1.55 16 30 H 0.12 3.09 6.19 -52.48 -0.32 2.76 16 31 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 32 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.08 1.58 6.75 -52.48 -0.35 1.22 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -28.29 276.58 -8.03 -36.32 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.70 Total: 8.22 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.18 Total: -16.46 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.62 Total: -35.33 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.10 Total: -10.09 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.29 -8.03 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.803 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds