Wall clock time and date at job start Mon Mar 30 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.38705 * 2 1 4 4 C 1.53982 * 110.44063 * 237.58222 * 2 1 3 5 5 C 1.51468 * 104.17768 * 241.28610 * 4 2 1 6 6 O 1.21283 * 125.56460 * 179.97438 * 5 4 2 7 7 N 1.34060 * 108.85125 * 359.90139 * 5 4 2 8 8 N 1.39334 * 113.07028 * 0.06486 * 7 5 4 9 9 C 1.38865 * 125.33165 * 180.02562 * 8 7 5 10 10 C 1.39570 * 119.83884 * 179.70363 * 9 8 7 11 11 C 1.36341 * 120.15646 * 179.71941 * 10 9 8 12 12 C 1.40883 * 119.83956 * 0.55218 * 11 10 9 13 13 C 1.41130 * 120.15999 * 179.74512 * 12 11 10 14 14 H 1.08003 * 120.00151 * 154.51688 * 13 12 11 15 15 C 1.39871 * 119.99680 * 334.51609 * 13 12 11 16 16 N 1.30902 * 120.00323 * 343.04840 * 15 13 12 17 17 Si 1.86804 * 119.99819 * 163.04406 * 15 13 12 18 18 H 1.48501 * 109.46672 * 90.00093 * 17 15 13 19 19 H 1.48498 * 109.46986 * 210.00149 * 17 15 13 20 20 H 1.48500 * 109.47333 * 330.00453 * 17 15 13 21 21 C 1.40887 * 119.68779 * 359.72003 * 12 11 10 22 22 C 1.36345 * 119.83386 * 0.02562 * 21 12 11 23 23 H 1.08998 * 109.47391 * 299.30103 * 1 2 3 24 24 H 1.09002 * 109.46866 * 179.30412 * 1 2 3 25 25 H 1.08999 * 109.47328 * 59.30344 * 1 2 3 26 26 H 1.09000 * 110.45891 * 359.96097 * 4 2 1 27 27 H 1.08996 * 110.46224 * 122.54261 * 4 2 1 28 28 H 0.96994 * 123.46096 * 180.08395 * 7 5 4 29 29 H 1.08003 * 119.91810 * 359.97096 * 10 9 8 30 30 H 1.08004 * 120.07749 * 180.27364 * 11 10 9 31 31 H 0.96990 * 120.00265 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.08575 * 179.97438 * 21 12 11 33 33 H 1.08007 * 119.91847 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0677 -0.7735 -1.2180 5 6 2.8584 -1.9150 -0.6130 6 8 3.4516 -2.7702 -1.2357 7 7 2.7966 -1.8244 0.7231 8 7 2.0430 -0.7379 1.1624 9 6 1.8133 -0.4045 2.4907 10 6 1.0429 0.7169 2.8020 11 6 0.8085 1.0470 4.1039 12 6 1.3558 0.2597 5.1361 13 6 1.1220 0.5983 6.4861 14 1 1.1625 -0.1650 7.2492 15 6 0.8377 1.9224 6.8358 16 7 1.1076 2.8926 5.9996 17 14 0.0728 2.3062 8.4963 18 1 1.1474 2.5344 9.4954 19 1 -0.7665 3.5262 8.3845 20 1 -0.7706 1.1631 8.9289 21 6 2.1372 -0.8676 4.8144 22 6 2.3590 -1.1887 3.5080 23 1 -0.3634 0.5029 0.8962 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3634 0.5246 -0.8837 26 1 1.2438 -1.1567 -1.8201 27 1 2.7155 -0.1354 -1.8190 28 1 3.2320 -2.4507 1.3223 29 1 0.6281 1.3223 2.0096 30 1 0.2085 1.9125 4.3433 31 1 0.9102 3.8108 6.2420 32 1 2.5602 -1.4754 5.6006 33 1 2.9575 -2.0529 3.2598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:30 Heat of formation + Delta-G solvation = 14.561181 kcal Electronic energy + Delta-G solvation = -17322.558325 eV Core-core repulsion = 14541.676782 eV Total energy + Delta-G solvation = -2780.881543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70582 -39.57222 -38.05139 -35.47512 -34.22539 -32.77744 -31.23397 -29.79899 -28.44245 -26.35136 -23.48021 -23.00654 -21.74483 -21.53651 -19.31890 -19.16168 -17.29745 -17.13099 -16.87898 -16.14344 -15.88467 -15.25310 -15.06916 -14.78308 -14.42509 -14.26976 -13.90537 -13.61287 -13.37740 -13.20387 -12.75219 -12.64662 -12.59733 -12.27318 -12.24818 -11.74390 -11.60301 -11.19225 -11.07852 -10.96861 -9.86117 -9.47048 -8.56894 -8.04464 -6.05456 1.00833 1.10327 1.11720 1.42136 1.43852 1.54268 1.60359 2.27251 2.79776 3.12583 3.40479 3.60434 3.77712 4.05136 4.30639 4.38994 4.41156 4.66752 4.71311 4.84224 5.01806 5.07037 5.10770 5.20256 5.34528 5.38876 5.44116 5.69985 5.74673 5.89565 6.13278 6.33206 6.59083 6.68360 6.76012 7.04175 7.08161 7.40073 8.44528 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049081 B = 0.005204 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.346861 B = 5379.430805 C = 5777.023583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 H 0.094 0.906 4 C -0.146 4.146 5 C 0.513 3.487 6 O -0.578 6.578 7 N -0.512 5.512 8 N -0.452 5.452 9 C 0.118 3.882 10 C -0.146 4.146 11 C -0.139 4.139 12 C 0.045 3.955 13 C -0.502 4.502 14 H 0.068 0.932 15 C 0.037 3.963 16 N -0.834 5.834 17 Si 0.974 3.026 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.262 1.262 21 C -0.198 4.198 22 C -0.161 4.161 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.419 0.581 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.285 0.715 32 H 0.097 0.903 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -0.599 -9.581 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.112 0.888 4 C -0.186 4.186 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.253 5.253 8 N -0.264 5.264 9 C 0.023 3.977 10 C -0.169 4.169 11 C -0.160 4.160 12 C 0.042 3.958 13 C -0.533 4.533 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.462 5.462 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.191 1.191 20 H -0.186 1.186 21 C -0.218 4.218 22 C -0.183 4.183 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.262 0.738 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.236 -0.738 -10.066 10.338 hybrid contribution 0.189 -0.214 1.479 1.506 sum -2.047 -0.953 -8.587 8.879 Atomic orbital electron populations 1.22374 0.93267 1.02777 1.04047 1.21762 0.95580 0.95841 0.81983 0.88798 1.22693 1.02191 0.95594 0.98100 1.20709 0.81161 0.87086 0.81131 1.90768 1.48625 1.41679 1.64648 1.45039 1.49091 1.23808 1.07366 1.45516 1.55341 1.22737 1.02817 1.16988 1.03578 0.97510 0.79630 1.20225 1.02967 0.97108 0.96553 1.20895 1.02156 1.01358 0.91545 1.17870 0.91345 0.92350 0.94192 1.19618 1.45362 0.94539 0.93794 0.91370 1.26562 0.93197 0.95439 1.02417 1.69869 1.36724 1.01237 1.38365 0.85321 0.78923 0.78535 0.77613 1.19199 1.19107 1.18635 1.20692 1.04254 1.01840 0.95034 1.19964 1.05054 1.00918 0.92398 0.92161 0.92827 0.87862 0.84623 0.84624 0.73828 0.85507 0.87319 0.90435 0.88483 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 8.96 71.98 0.65 -2.80 16 2 C 0.15 3.52 3.32 45.24 0.15 3.67 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.15 -2.85 6.63 30.42 0.20 -2.65 16 5 C 0.51 14.74 8.64 88.01 0.76 15.50 16 6 O -0.58 -20.38 18.03 -3.04 -0.05 -20.44 16 7 N -0.51 -15.46 6.54 -173.70 -1.14 -16.60 16 8 N -0.45 -14.38 3.80 -316.10 -1.20 -15.58 16 9 C 0.12 4.67 6.59 38.67 0.25 4.92 16 10 C -0.15 -6.07 8.54 22.15 0.19 -5.88 16 11 C -0.14 -6.88 8.63 22.47 0.19 -6.68 16 12 C 0.05 2.38 5.57 -21.27 -0.12 2.26 16 13 C -0.50 -26.82 9.03 23.38 0.21 -26.61 16 14 H 0.07 3.56 7.90 -2.91 -0.02 3.53 16 15 C 0.04 1.84 5.15 85.23 0.44 2.28 16 16 N -0.83 -42.73 10.96 21.82 0.24 -42.49 16 17 Si 0.97 38.01 29.59 68.60 2.03 40.04 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.20 -9.46 9.74 22.48 0.22 -9.24 16 22 C -0.16 -6.78 9.56 22.15 0.21 -6.56 16 23 H 0.06 1.50 5.38 -2.39 -0.01 1.49 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.14 2.02 7.72 -2.39 -0.02 2.00 16 27 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.42 12.29 7.59 -213.82 -1.62 10.66 16 29 H 0.13 4.47 5.54 -2.91 -0.02 4.45 16 30 H 0.11 5.62 6.19 -2.91 -0.02 5.60 16 31 H 0.29 13.24 8.30 -92.72 -0.77 12.47 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.11 3.90 6.75 -2.91 -0.02 3.88 16 Total: -1.00 -62.53 276.58 2.76 -59.78 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.48 Total: 27.08 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.36 Total: -31.79 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -2.10 Total: -74.67 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -62.53 2.76 -59.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds