Wall clock time and date at job start Mon Mar 30 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39530 * 123.87409 * 2 1 4 4 C 1.39378 * 130.82669 * 0.33501 * 3 2 1 5 5 C 1.37933 * 120.12813 * 180.20597 * 4 3 2 6 6 C 1.50703 * 119.80894 * 179.73054 * 5 4 3 7 7 H 1.09000 * 109.47408 * 19.72496 * 6 5 4 8 8 N 1.46898 * 109.47401 * 139.72584 * 6 5 4 9 9 C 1.50708 * 109.46925 * 259.72490 * 6 5 4 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.38299 * 120.37990 * 359.45070 * 5 4 3 18 18 C 1.38399 * 119.82494 * 0.27687 * 17 5 4 19 19 C 1.37678 * 119.91009 * 359.97438 * 18 17 5 20 20 C 1.51140 * 132.84755 * 180.02562 * 19 18 17 21 21 C 1.34364 * 123.88111 * 180.02562 * 2 1 3 22 22 O 1.21294 * 126.43859 * 359.96774 * 21 2 1 23 23 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46888 * 299.94320 * 1 2 3 25 25 H 1.08996 * 109.47308 * 59.94840 * 1 2 3 26 26 H 1.08007 * 119.93267 * 359.95352 * 4 3 2 27 27 H 1.00899 * 110.99967 * 296.03961 * 8 6 5 28 28 H 1.00896 * 110.99883 * 59.99918 * 8 6 5 29 29 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.09057 * 180.29955 * 17 5 4 31 31 H 1.07993 * 120.03911 * 180.02562 * 18 17 5 32 32 H 1.09002 * 110.50511 * 298.64081 * 20 19 18 33 33 H 1.08997 * 110.51492 * 61.20414 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2427 1.1585 0.0000 4 6 1.8750 2.5028 0.0062 5 6 2.8430 3.4854 0.0004 6 6 2.4372 4.9368 0.0010 7 1 1.4095 5.0267 0.3528 8 7 3.3274 5.6938 0.8911 9 6 2.5391 5.4874 -1.3982 10 1 2.8647 4.8500 -2.2069 11 6 2.2157 6.8046 -1.6460 12 7 2.3041 7.2850 -2.8670 13 14 1.6519 7.9069 -0.2472 14 1 0.1745 7.8275 -0.1190 15 1 2.0494 9.3093 -0.5311 16 1 2.2835 7.4604 1.0204 17 6 4.1838 3.1464 -0.0001 18 6 4.5567 1.8136 -0.0006 19 6 3.5925 0.8309 0.0000 20 6 3.6636 -0.6789 0.0002 21 6 2.2141 -1.1155 -0.0005 22 8 1.8056 -2.2576 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5129 0.8905 25 1 -0.3634 0.5146 -0.8895 26 1 0.8300 2.7757 0.0114 27 1 3.2296 5.3864 1.8471 28 1 4.2867 5.6262 0.5859 29 1 2.0769 8.2118 -3.0412 30 1 4.9378 3.9196 0.0002 31 1 5.6027 1.5449 -0.0006 32 1 4.1700 -1.0374 -0.8960 33 1 4.1731 -1.0371 0.8946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261035067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:13 Heat of formation + Delta-G solvation = 11.554067 kcal Electronic energy + Delta-G solvation = -17345.566671 eV Core-core repulsion = 14564.554730 eV Total energy + Delta-G solvation = -2781.011941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34011 -38.51074 -36.36144 -34.42979 -32.50838 -31.57551 -30.09389 -27.72239 -26.69301 -25.94881 -22.47541 -22.08761 -20.76869 -19.31740 -16.98128 -16.75538 -16.52568 -16.27116 -15.52631 -14.76208 -14.41324 -14.01070 -13.86429 -13.72192 -13.53985 -13.12246 -12.94540 -12.43906 -12.37379 -12.04740 -11.70470 -11.60438 -10.86998 -10.78318 -10.49991 -10.16863 -9.95194 -9.91705 -9.32892 -8.59321 -8.28173 -7.68851 -7.27910 -6.05279 -4.16433 1.44333 1.68570 2.53416 2.80725 3.47133 3.58290 3.88401 4.09800 4.20794 4.50624 4.65938 4.98614 5.11957 5.25115 5.29064 5.30613 5.36782 5.42457 5.56106 5.67447 5.74924 5.89028 5.95087 6.16488 6.34473 6.65522 6.69849 6.73000 6.92144 7.16710 7.35111 7.53551 7.90544 8.10300 8.26773 8.62890 8.94905 9.58165 11.04216 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.005894 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.251236 B = 4749.564938 C = 5030.641938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.550 5.550 3 C 0.133 3.867 4 C -0.131 4.131 5 C -0.032 4.032 6 C 0.218 3.782 7 H 0.046 0.954 8 N -0.833 5.833 9 C -0.522 4.522 10 H 0.070 0.930 11 C 0.086 3.914 12 N -0.898 5.898 13 Si 0.866 3.134 14 H -0.297 1.297 15 H -0.304 1.304 16 H -0.192 1.192 17 C -0.133 4.133 18 C -0.069 4.069 19 C -0.166 4.166 20 C -0.108 4.108 21 C 0.524 3.476 22 O -0.519 6.519 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.309 0.691 28 H 0.331 0.669 29 H 0.264 0.736 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -11.451 8.317 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.273 5.273 3 C 0.038 3.962 4 C -0.152 4.152 5 C -0.035 4.035 6 C 0.109 3.891 7 H 0.064 0.936 8 N -0.362 5.362 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.119 4.119 12 N -0.535 5.535 13 Si 0.693 3.307 14 H -0.225 1.225 15 H -0.231 1.231 16 H -0.113 1.113 17 C -0.153 4.153 18 C -0.087 4.087 19 C -0.169 4.169 20 C -0.147 4.147 21 C 0.314 3.686 22 O -0.396 6.396 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.945 -11.349 7.990 13.911 hybrid contribution -0.076 -0.203 0.418 0.470 sum 0.869 -11.552 8.407 14.314 Atomic orbital electron populations 1.21820 0.77819 1.04054 1.02909 1.45666 1.07216 1.05782 1.68619 1.18171 0.90020 0.87298 1.00702 1.20305 1.00344 0.88451 1.06142 1.21046 0.92440 0.98531 0.91500 1.18630 0.93205 0.82714 0.94571 0.93590 1.60074 1.11428 1.60546 1.04196 1.20686 1.48022 0.96776 0.90477 0.91170 1.24984 0.93223 0.97941 0.95721 1.69953 1.47508 1.15395 1.20596 0.87213 0.77698 0.78020 0.87774 1.22496 1.23108 1.11314 1.20922 0.96256 0.95193 1.02883 1.20160 0.97961 0.91621 0.98967 1.19599 0.92900 0.94129 1.10222 1.20945 0.94913 0.93291 1.05539 1.20689 0.89205 0.83868 0.74821 1.90743 1.79223 1.19051 1.50554 0.89503 0.91188 0.90935 0.86042 0.87995 0.85476 0.92709 0.85502 0.86030 0.86516 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.86 59.85 0.65 1.54 16 2 N -0.55 -7.95 3.13 -120.62 -0.38 -8.32 16 3 C 0.13 2.07 6.70 -83.69 -0.56 1.51 16 4 C -0.13 -2.23 9.45 -39.27 -0.37 -2.60 16 5 C -0.03 -0.59 4.88 -104.71 -0.51 -1.10 16 6 C 0.22 4.59 2.34 -70.01 -0.16 4.43 16 7 H 0.05 1.00 7.41 -51.93 -0.38 0.61 16 8 N -0.83 -15.67 5.66 -6.65 -0.04 -15.71 16 9 C -0.52 -13.80 9.28 -34.44 -0.32 -14.12 16 10 H 0.07 2.07 7.98 -52.49 -0.42 1.65 16 11 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 12 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 13 Si 0.87 20.76 26.94 -169.99 -4.58 16.19 16 14 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 16 H -0.19 -4.19 5.17 56.52 0.29 -3.90 16 17 C -0.13 -2.16 9.30 -39.50 -0.37 -2.53 16 18 C -0.07 -0.96 10.04 -39.73 -0.40 -1.36 16 19 C -0.17 -2.36 6.35 -104.37 -0.66 -3.02 16 20 C -0.11 -1.29 6.88 -28.48 -0.20 -1.49 16 21 C 0.52 7.70 8.24 -10.83 -0.09 7.61 16 22 O -0.52 -8.83 17.43 5.55 0.10 -8.73 16 23 H 0.09 0.97 7.57 -51.93 -0.39 0.57 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.12 1.97 8.02 -52.48 -0.42 1.55 16 27 H 0.31 4.96 9.06 -39.29 -0.36 4.61 16 28 H 0.33 5.94 7.32 -39.29 -0.29 5.65 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.13 1.97 6.65 -52.49 -0.35 1.62 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 279.23 15.07 4.21 4.21 Total: -1.00 -31.87 279.23 -6.97 -38.84 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -3.97 Total: 8.63 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.09 Total: -8.85 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.36 Total: -50.29 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.10 Total: -8.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.58 Total: 16.19 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.87 -6.97 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.399 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds