Wall clock time and date at job start Mon Mar 30 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39530 * 123.87409 * 2 1 4 4 C 1.39378 * 130.82669 * 0.33501 * 3 2 1 5 5 C 1.37933 * 120.12813 * 180.20597 * 4 3 2 6 6 C 1.50703 * 119.80894 * 179.73054 * 5 4 3 7 7 H 1.09000 * 109.47408 * 19.72496 * 6 5 4 8 8 N 1.46898 * 109.47401 * 139.72584 * 6 5 4 9 9 C 1.50708 * 109.46925 * 259.72490 * 6 5 4 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.38299 * 120.37990 * 359.45070 * 5 4 3 18 18 C 1.38399 * 119.82494 * 0.27687 * 17 5 4 19 19 C 1.37678 * 119.91009 * 359.97438 * 18 17 5 20 20 C 1.51140 * 132.84755 * 180.02562 * 19 18 17 21 21 C 1.34364 * 123.88111 * 180.02562 * 2 1 3 22 22 O 1.21294 * 126.43859 * 359.96774 * 21 2 1 23 23 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46888 * 299.94320 * 1 2 3 25 25 H 1.08996 * 109.47308 * 59.94840 * 1 2 3 26 26 H 1.08007 * 119.93267 * 359.95352 * 4 3 2 27 27 H 1.00899 * 110.99967 * 296.03961 * 8 6 5 28 28 H 1.00896 * 110.99883 * 59.99918 * 8 6 5 29 29 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.09057 * 180.29955 * 17 5 4 31 31 H 1.07993 * 120.03911 * 180.02562 * 18 17 5 32 32 H 1.09002 * 110.50511 * 298.64081 * 20 19 18 33 33 H 1.08997 * 110.51492 * 61.20414 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2427 1.1585 0.0000 4 6 1.8750 2.5028 0.0062 5 6 2.8430 3.4854 0.0004 6 6 2.4372 4.9368 0.0010 7 1 1.4095 5.0267 0.3528 8 7 3.3274 5.6938 0.8911 9 6 2.5391 5.4874 -1.3982 10 1 2.8647 4.8500 -2.2069 11 6 2.2157 6.8046 -1.6460 12 7 2.3041 7.2850 -2.8670 13 14 1.6519 7.9069 -0.2472 14 1 0.1745 7.8275 -0.1190 15 1 2.0494 9.3093 -0.5311 16 1 2.2835 7.4604 1.0204 17 6 4.1838 3.1464 -0.0001 18 6 4.5567 1.8136 -0.0006 19 6 3.5925 0.8309 0.0000 20 6 3.6636 -0.6789 0.0002 21 6 2.2141 -1.1155 -0.0005 22 8 1.8056 -2.2576 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5129 0.8905 25 1 -0.3634 0.5146 -0.8895 26 1 0.8300 2.7757 0.0114 27 1 3.2296 5.3864 1.8471 28 1 4.2867 5.6262 0.5859 29 1 2.0769 8.2118 -3.0412 30 1 4.9378 3.9196 0.0002 31 1 5.6027 1.5449 -0.0006 32 1 4.1700 -1.0374 -0.8960 33 1 4.1731 -1.0371 0.8946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:12 Heat of formation + Delta-G solvation = -10.458723 kcal Electronic energy + Delta-G solvation = -17346.521218 eV Core-core repulsion = 14564.554730 eV Total energy + Delta-G solvation = -2781.966487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.47706 -39.76840 -37.69422 -35.83151 -34.12194 -33.17362 -31.26759 -29.07028 -28.00070 -27.46380 -23.92163 -23.39292 -21.98060 -20.62245 -18.91063 -17.93472 -17.78961 -17.35834 -16.88549 -16.46800 -15.93681 -15.38202 -15.12540 -14.90566 -14.64781 -14.43745 -14.20583 -14.11925 -13.46193 -13.34542 -13.22164 -12.84170 -12.69793 -12.25325 -12.10302 -11.61613 -11.43567 -11.24832 -11.14473 -10.70275 -9.57160 -8.96755 -8.77574 -8.20229 -6.33561 0.24178 0.46692 1.40010 1.54681 1.62689 1.73507 1.98344 2.64270 2.86020 3.13652 3.19518 3.44633 3.89608 4.03793 4.17817 4.29079 4.35192 4.38717 4.49536 4.51528 4.59281 4.67073 4.80889 4.93340 5.06028 5.20380 5.47171 5.55349 5.57507 5.73473 5.88465 6.14044 6.20447 6.54564 6.79157 6.83958 7.10344 7.44747 8.92957 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.005894 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.251236 B = 4749.564938 C = 5030.641938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.554 5.554 3 C 0.123 3.877 4 C -0.142 4.142 5 C -0.058 4.058 6 C 0.228 3.772 7 H 0.042 0.958 8 N -0.835 5.835 9 C -0.513 4.513 10 H 0.025 0.975 11 C 0.025 3.975 12 N -0.953 5.953 13 Si 0.927 3.073 14 H -0.304 1.304 15 H -0.318 1.318 16 H -0.151 1.151 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.158 4.158 20 C -0.099 4.099 21 C 0.517 3.483 22 O -0.548 6.548 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.332 0.668 28 H 0.338 0.662 29 H 0.261 0.739 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -12.743 10.475 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.276 5.276 3 C 0.028 3.972 4 C -0.164 4.164 5 C -0.061 4.061 6 C 0.117 3.883 7 H 0.060 0.940 8 N -0.366 5.366 9 C -0.551 4.551 10 H 0.043 0.957 11 C -0.173 4.173 12 N -0.593 5.593 13 Si 0.753 3.247 14 H -0.232 1.232 15 H -0.246 1.246 16 H -0.072 1.072 17 C -0.160 4.160 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.137 4.137 21 C 0.309 3.691 22 O -0.426 6.426 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.177 0.823 32 H 0.157 0.843 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.077 -12.661 10.175 16.376 hybrid contribution -0.412 0.057 -0.304 0.515 sum 1.666 -12.605 9.872 16.097 Atomic orbital electron populations 1.21985 0.76817 1.04616 1.03773 1.45849 1.08157 1.05493 1.68118 1.18231 0.91101 0.87035 1.00861 1.20279 1.00134 0.89196 1.06758 1.20772 0.93808 0.97056 0.94489 1.18244 0.93571 0.84719 0.91720 0.94019 1.59703 1.11518 1.60226 1.05179 1.20944 1.45908 0.95869 0.92394 0.95700 1.25904 0.93758 0.99781 0.97868 1.70109 1.50402 1.15691 1.23089 0.86355 0.76799 0.75076 0.86454 1.23180 1.24647 1.07160 1.21057 0.95383 0.96658 1.02887 1.20463 0.99798 0.90353 0.97135 1.19958 0.92216 0.95626 1.08280 1.21043 0.93383 0.91283 1.07985 1.21147 0.90409 0.83397 0.74152 1.90733 1.79915 1.19990 1.51994 0.89057 0.89791 0.90703 0.86283 0.85471 0.84694 0.93036 0.85073 0.82333 0.84254 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.86 127.77 1.39 2.94 16 2 N -0.55 -15.05 3.13 -654.15 -2.05 -17.10 16 3 C 0.12 3.60 6.70 38.35 0.26 3.86 16 4 C -0.14 -4.72 9.45 22.47 0.21 -4.50 16 5 C -0.06 -2.07 4.88 -19.92 -0.10 -2.17 16 6 C 0.23 9.40 2.34 43.43 0.10 9.50 16 7 H 0.04 1.76 7.41 -2.39 -0.02 1.74 16 8 N -0.84 -29.42 5.66 -174.94 -0.99 -30.41 16 9 C -0.51 -27.69 9.28 25.60 0.24 -27.45 16 10 H 0.02 1.53 7.98 -2.92 -0.02 1.50 16 11 C 0.03 1.43 5.47 84.65 0.46 1.89 16 12 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 13 Si 0.93 43.09 26.94 68.60 1.85 44.94 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.32 -15.45 7.11 99.48 0.71 -14.74 16 16 H -0.15 -6.04 5.17 99.48 0.51 -5.52 16 17 C -0.14 -4.27 9.30 22.32 0.21 -4.06 16 18 C -0.06 -1.45 10.04 22.18 0.22 -1.23 16 19 C -0.16 -3.98 6.35 -19.70 -0.13 -4.10 16 20 C -0.10 -1.97 6.88 29.46 0.20 -1.77 16 21 C 0.52 13.99 8.24 87.94 0.72 14.71 16 22 O -0.55 -17.70 17.43 -3.07 -0.05 -17.75 16 23 H 0.09 1.95 7.57 -2.39 -0.02 1.93 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.12 3.86 8.02 -2.91 -0.02 3.83 16 27 H 0.33 9.56 9.06 -89.70 -0.81 8.75 16 28 H 0.34 11.39 7.32 -89.70 -0.66 10.73 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.13 3.79 6.65 -2.91 -0.02 3.77 16 31 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.88 279.23 2.33 -68.55 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.52 Total: 23.36 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 3.79 Total: -12.38 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -2.74 Total: -106.72 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.85 Total: 44.94 kcal Total: -70.88 2.33 -68.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.087 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds