Wall clock time and date at job start Mon Mar 30 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39539 * 123.87420 * 2 1 4 4 C 1.39363 * 130.82243 * 359.39568 * 3 2 1 5 5 C 1.37940 * 120.12977 * 180.30681 * 4 3 2 6 6 C 1.50699 * 119.81622 * 180.25662 * 5 4 3 7 7 H 1.09006 * 109.46851 * 340.00508 * 6 5 4 8 8 N 1.46898 * 109.47332 * 220.00548 * 6 5 4 9 9 C 1.50697 * 109.47345 * 99.99930 * 6 5 4 10 10 H 1.08007 * 119.99831 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00204 * 180.02562 * 9 6 5 12 12 N 1.31523 * 120.00116 * 180.02562 * 11 9 6 13 13 Si 1.86797 * 120.00100 * 0.02562 * 11 9 6 14 14 H 1.48498 * 109.46941 * 89.99897 * 13 11 9 15 15 H 1.48498 * 109.47369 * 209.99982 * 13 11 9 16 16 H 1.48498 * 109.47067 * 329.99901 * 13 11 9 17 17 C 1.38304 * 120.37445 * 0.28155 * 5 4 3 18 18 C 1.38395 * 119.82515 * 359.97438 * 17 5 4 19 19 C 1.37682 * 119.91558 * 359.97438 * 18 17 5 20 20 C 1.51132 * 132.84828 * 179.97438 * 19 18 17 21 21 C 1.34362 * 123.87810 * 179.75531 * 2 1 3 22 22 O 1.21291 * 126.44128 * 0.03559 * 21 2 1 23 23 H 1.08997 * 109.46815 * 180.22047 * 1 2 3 24 24 H 1.09000 * 109.46859 * 300.21844 * 1 2 3 25 25 H 1.08997 * 109.47341 * 60.21483 * 1 2 3 26 26 H 1.08002 * 119.93953 * 0.59226 * 4 3 2 27 27 H 1.00902 * 110.99915 * 299.99844 * 8 6 5 28 28 H 1.00898 * 111.00027 * 63.95440 * 8 6 5 29 29 H 0.96996 * 119.99716 * 179.97438 * 12 11 9 30 30 H 1.07994 * 120.08783 * 179.97438 * 17 5 4 31 31 H 1.08007 * 120.04116 * 180.02562 * 18 17 5 32 32 H 1.09001 * 110.51079 * 298.64421 * 20 19 18 33 33 H 1.08994 * 110.51558 * 61.22246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1585 0.0000 4 6 1.8750 2.5027 -0.0111 5 6 2.8430 3.4854 -0.0148 6 6 2.4374 4.9368 -0.0210 7 1 1.4096 5.0252 -0.3732 8 7 3.3276 5.6903 -0.9141 9 6 2.5392 5.4928 1.3759 10 1 2.8655 4.8587 2.1871 11 6 2.2158 6.8109 1.6185 12 7 2.3052 7.2964 2.8376 13 14 1.6509 7.9075 0.2158 14 1 0.1735 7.8272 0.0890 15 1 2.0483 9.3110 0.4936 16 1 2.2816 7.4558 -1.0505 17 6 4.1839 3.1463 -0.0134 18 6 4.5568 1.8135 -0.0077 19 6 3.5925 0.8308 -0.0029 20 6 3.6637 -0.6789 0.0032 21 6 2.2140 -1.1155 0.0048 22 8 1.8055 -2.2575 0.0090 23 1 -0.3633 -1.0276 0.0040 24 1 -0.3633 0.5172 0.8880 25 1 -0.3634 0.5105 -0.8919 26 1 0.8301 2.7757 -0.0122 27 1 4.2870 5.6238 -0.6086 28 1 3.2298 5.3791 -1.8689 29 1 2.0780 8.2238 3.0082 30 1 4.9379 3.9194 -0.0167 31 1 5.6028 1.5448 -0.0061 32 1 4.1698 -1.0410 -0.8917 33 1 4.1732 -1.0337 0.8990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:14 Heat of formation + Delta-G solvation = -10.479406 kcal Electronic energy + Delta-G solvation = -17346.639333 eV Core-core repulsion = 14564.671949 eV Total energy + Delta-G solvation = -2781.967384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.47661 -39.76854 -37.69428 -35.83126 -34.12085 -33.17356 -31.26803 -29.07026 -28.00090 -27.46315 -23.92169 -23.39252 -21.98014 -20.62231 -18.91099 -17.93466 -17.78936 -17.35795 -16.88571 -16.46763 -15.93719 -15.38193 -15.12528 -14.90562 -14.64756 -14.43674 -14.20574 -14.11974 -13.46200 -13.34526 -13.22223 -12.84130 -12.69838 -12.25479 -12.10218 -11.61585 -11.43608 -11.24832 -11.14390 -10.70230 -9.57084 -8.96764 -8.77746 -8.20242 -6.33586 0.24205 0.46655 1.40014 1.54686 1.62670 1.73522 1.98301 2.64255 2.85993 3.13599 3.19472 3.44675 3.89626 4.03802 4.17829 4.29032 4.35230 4.38702 4.49561 4.51559 4.59284 4.67077 4.80893 4.93350 5.06047 5.20351 5.47175 5.55327 5.57502 5.73471 5.88430 6.14033 6.20395 6.54576 6.79178 6.83900 7.10325 7.44733 8.92933 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036484 B = 0.005894 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.272977 B = 4749.186006 C = 5030.488596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.554 5.554 3 C 0.123 3.877 4 C -0.142 4.142 5 C -0.058 4.058 6 C 0.228 3.772 7 H 0.042 0.958 8 N -0.835 5.835 9 C -0.513 4.513 10 H 0.025 0.975 11 C 0.025 3.975 12 N -0.953 5.953 13 Si 0.928 3.072 14 H -0.304 1.304 15 H -0.318 1.318 16 H -0.152 1.152 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.158 4.158 20 C -0.099 4.099 21 C 0.517 3.483 22 O -0.547 6.547 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.338 0.662 28 H 0.332 0.668 29 H 0.261 0.739 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -12.784 -10.413 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.276 5.276 3 C 0.028 3.972 4 C -0.164 4.164 5 C -0.061 4.061 6 C 0.117 3.883 7 H 0.060 0.940 8 N -0.366 5.366 9 C -0.551 4.551 10 H 0.043 0.957 11 C -0.173 4.173 12 N -0.593 5.593 13 Si 0.753 3.247 14 H -0.232 1.232 15 H -0.246 1.246 16 H -0.072 1.072 17 C -0.160 4.160 18 C -0.078 4.078 19 C -0.161 4.161 20 C -0.137 4.137 21 C 0.309 3.691 22 O -0.426 6.426 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.074 -12.701 -10.116 16.369 hybrid contribution -0.411 0.058 0.305 0.515 sum 1.663 -12.643 -9.811 16.089 Atomic orbital electron populations 1.21985 0.76819 1.04613 1.03774 1.45852 1.08156 1.05492 1.68120 1.18230 0.91101 0.87034 1.00863 1.20276 1.00139 0.89199 1.06748 1.20776 0.93808 0.97040 0.94506 1.18241 0.93572 0.84738 0.91699 0.94020 1.59704 1.11514 1.60264 1.05146 1.20944 1.45888 0.95847 0.92427 0.95700 1.25905 0.93764 0.99739 0.97904 1.70113 1.50405 1.15527 1.23249 0.86350 0.76793 0.75083 0.86442 1.23177 1.24642 1.07181 1.21057 0.95381 0.96654 1.02890 1.20465 0.99799 0.90353 0.97136 1.19959 0.92215 0.95628 1.08276 1.21043 0.93382 0.91282 1.07983 1.21149 0.90411 0.83396 0.74151 1.90732 1.79914 1.19993 1.51993 0.89057 0.90712 0.89784 0.86290 0.84696 0.85472 0.93037 0.85072 0.82332 0.83586 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.86 127.77 1.39 2.94 16 2 N -0.55 -15.05 3.13 -654.14 -2.05 -17.10 16 3 C 0.12 3.60 6.70 38.34 0.26 3.86 16 4 C -0.14 -4.72 9.45 22.47 0.21 -4.50 16 5 C -0.06 -2.08 4.88 -19.92 -0.10 -2.17 16 6 C 0.23 9.40 2.34 43.42 0.10 9.50 16 7 H 0.04 1.76 7.41 -2.38 -0.02 1.75 16 8 N -0.84 -29.42 5.66 -174.96 -0.99 -30.41 16 9 C -0.51 -27.68 9.28 25.60 0.24 -27.44 16 10 H 0.02 1.53 7.98 -2.91 -0.02 1.50 16 11 C 0.03 1.43 5.47 84.65 0.46 1.89 16 12 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 13 Si 0.93 43.10 26.94 68.60 1.85 44.95 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.32 -15.44 7.11 99.48 0.71 -14.73 16 16 H -0.15 -6.05 5.17 99.48 0.51 -5.53 16 17 C -0.14 -4.27 9.30 22.32 0.21 -4.06 16 18 C -0.06 -1.45 10.04 22.18 0.22 -1.23 16 19 C -0.16 -3.98 6.35 -19.70 -0.13 -4.10 16 20 C -0.10 -1.97 6.88 29.46 0.20 -1.77 16 21 C 0.52 13.99 8.24 87.94 0.72 14.71 16 22 O -0.55 -17.70 17.43 -3.06 -0.05 -17.75 16 23 H 0.09 1.95 7.57 -2.39 -0.02 1.93 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.12 3.86 8.02 -2.91 -0.02 3.84 16 27 H 0.34 11.39 7.32 -89.69 -0.66 10.74 16 28 H 0.33 9.56 9.06 -89.70 -0.81 8.75 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.13 3.79 6.65 -2.91 -0.02 3.77 16 31 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.87 279.23 2.33 -68.53 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.52 Total: 23.37 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.79 Total: -12.37 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -2.74 Total: -106.72 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.85 Total: 44.95 kcal Total: -70.87 2.33 -68.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.054 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds