Wall clock time and date at job start Mon Mar 30 2020 03:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38123 * 120.03776 * 2 1 4 4 C 1.38257 * 120.07280 * 180.02562 * 3 2 1 5 5 C 1.38302 * 120.15280 * 0.02562 * 4 3 2 6 6 C 1.38087 * 120.07495 * 359.70356 * 5 4 3 7 7 C 1.38890 * 120.03547 * 180.02562 * 2 1 3 8 8 N 1.39678 * 120.07364 * 359.95694 * 7 2 1 9 9 C 1.46933 * 125.33533 * 125.00318 * 8 7 2 10 10 C 1.53980 * 104.46379 * 179.97438 * 9 8 7 11 11 C 1.51199 * 104.31217 * 359.77402 * 10 9 8 12 12 O 1.21284 * 125.58964 * 180.24121 * 11 10 9 13 13 N 1.34059 * 108.81629 * 0.38902 * 11 10 9 14 14 C 1.37103 * 123.45911 * 179.84938 * 13 11 10 15 15 H 1.07999 * 120.00169 * 146.24229 * 14 13 11 16 16 C 1.38952 * 119.99944 * 326.24342 * 14 13 11 17 17 N 1.31416 * 120.00121 * 339.01065 * 16 14 13 18 18 Si 1.86799 * 120.00009 * 159.01098 * 16 14 13 19 19 H 1.48497 * 109.47391 * 265.36877 * 18 16 14 20 20 H 1.48502 * 109.46958 * 25.37216 * 18 16 14 21 21 H 1.48504 * 109.46919 * 145.36656 * 18 16 14 22 22 H 1.08997 * 109.46931 * 269.97933 * 1 2 3 23 23 H 1.09003 * 109.46836 * 29.98019 * 1 2 3 24 24 H 1.08994 * 109.47164 * 149.97934 * 1 2 3 25 25 H 1.08006 * 119.96228 * 0.04654 * 3 2 1 26 26 H 1.08007 * 119.92466 * 180.02562 * 4 3 2 27 27 H 1.07998 * 119.96459 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.03981 * 180.27275 * 6 5 4 29 29 H 1.08997 * 110.43124 * 298.72154 * 9 8 7 30 30 H 1.08998 * 110.43568 * 61.10711 * 9 8 7 31 31 H 1.08994 * 110.46429 * 118.70190 * 10 9 8 32 32 H 1.09001 * 110.46467 * 241.16489 * 10 9 8 33 33 H 0.96991 * 119.99779 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2765 0.0011 -0.0016 6 6 3.5916 -1.1979 0.0040 7 6 2.2023 -1.2024 -0.0005 8 7 1.5062 -2.4134 -0.0002 9 6 1.6782 -3.4927 -0.9822 10 6 0.6891 -4.5836 -0.5319 11 6 0.0333 -4.0070 0.7025 12 8 -0.8146 -4.5566 1.3733 13 7 0.5404 -2.7874 0.9319 14 6 0.1526 -1.9923 1.9793 15 1 0.8689 -1.3394 2.4557 16 6 -1.1620 -2.0265 2.4280 17 7 -2.1141 -2.4721 1.6393 18 14 -1.5761 -1.4391 4.1522 19 1 -1.5946 -2.5991 5.0792 20 1 -0.5517 -0.4625 4.6017 21 1 -2.9111 -0.7888 4.1463 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5141 25 1 1.6585 2.1311 0.0008 26 1 4.1193 2.1330 -0.0001 27 1 5.3565 0.0053 -0.0024 28 1 4.1352 -2.1311 0.0076 29 1 1.4268 -3.1405 -1.9826 30 1 2.7005 -3.8699 -0.9580 31 1 -0.0518 -4.7705 -1.3091 32 1 1.2214 -5.5022 -0.2850 33 1 -3.0318 -2.4956 1.9524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:36 Heat of formation + Delta-G solvation = 39.503264 kcal Electronic energy + Delta-G solvation = -18369.220171 eV Core-core repulsion = 15589.420198 eV Total energy + Delta-G solvation = -2779.799973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27570 -39.67755 -37.09807 -35.29272 -33.49173 -32.65219 -32.23766 -29.18701 -27.29344 -26.93073 -24.23919 -22.45545 -22.02467 -21.66873 -19.17458 -17.87985 -17.18206 -16.71816 -16.27607 -16.23694 -15.74895 -15.35568 -14.86024 -14.45752 -14.32280 -14.15061 -13.78243 -13.49738 -13.38992 -13.04175 -12.98742 -12.89982 -12.64668 -12.41631 -12.12858 -11.98484 -11.83237 -11.26179 -10.51859 -10.10285 -9.58506 -9.40557 -8.41356 -7.88618 -5.93337 0.55719 0.63018 1.33640 1.37746 1.47438 1.73306 2.32205 2.41569 2.97920 3.17037 3.77539 3.88511 4.06879 4.16549 4.23009 4.26495 4.37998 4.56212 4.61791 4.79419 4.85225 4.96122 5.00383 5.04944 5.16028 5.21989 5.35967 5.59616 5.68787 5.74415 5.86769 6.09393 6.16193 6.45441 6.92522 7.44918 7.69465 8.41824 8.76514 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.011043 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.224203 B = 2534.877076 C = 3423.794273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.118 4.118 3 C -0.114 4.114 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.186 3.814 8 N -0.500 5.500 9 C 0.138 3.862 10 C -0.149 4.149 11 C 0.440 3.560 12 O -0.588 6.588 13 N -0.253 5.253 14 C -0.329 4.329 15 H 0.076 0.924 16 C 0.015 3.985 17 N -0.844 5.844 18 Si 0.976 3.024 19 H -0.285 1.285 20 H -0.254 1.254 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.030 0.970 25 H 0.133 0.867 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.658 5.759 -5.889 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C -0.132 4.132 4 C -0.158 4.158 5 C -0.124 4.124 6 C -0.173 4.173 7 C 0.091 3.909 8 N -0.311 5.311 9 C 0.017 3.983 10 C -0.190 4.190 11 C 0.227 3.773 12 O -0.470 6.470 13 N -0.056 5.056 14 C -0.458 4.458 15 H 0.094 0.906 16 C -0.195 4.195 17 N -0.478 5.478 18 Si 0.799 3.201 19 H -0.212 1.212 20 H -0.178 1.178 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.151 0.849 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.013 5.444 -5.575 13.491 hybrid contribution -0.987 -0.013 0.724 1.224 sum 10.026 5.431 -4.851 12.392 Atomic orbital electron populations 1.20539 0.91843 0.99606 1.02040 1.20284 0.96185 0.93492 1.02222 1.21102 0.95214 0.96453 1.00473 1.21342 0.93357 0.99239 1.01844 1.21233 1.00854 0.91074 0.99204 1.21281 0.91690 0.99897 1.04398 1.17354 0.90352 0.82943 1.00285 1.46423 1.40283 1.16750 1.27595 1.21945 0.99775 0.85532 0.91071 1.22292 0.99605 0.99959 0.97128 1.19979 0.85609 0.82020 0.89732 1.90513 1.34968 1.64750 1.56771 1.43295 1.31565 1.12730 1.17967 1.19097 0.94038 1.26558 1.06156 0.90610 1.26019 0.94602 0.96685 1.02162 1.70045 1.00593 1.40877 1.36296 0.85204 0.78301 0.78135 0.78433 1.21173 1.17803 1.19901 0.91908 0.92500 0.95084 0.84941 0.83170 0.82876 0.85209 0.90980 0.88856 0.88384 0.86721 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.64 8.22 71.24 0.59 -3.05 16 2 C -0.12 -4.57 5.55 -19.73 -0.11 -4.68 16 3 C -0.11 -3.48 9.70 22.25 0.22 -3.26 16 4 C -0.14 -3.44 10.04 22.29 0.22 -3.21 16 5 C -0.11 -2.60 10.04 22.25 0.22 -2.38 16 6 C -0.15 -4.65 9.80 22.40 0.22 -4.43 16 7 C 0.19 7.21 5.57 38.21 0.21 7.43 16 8 N -0.50 -21.50 3.18 -336.84 -1.07 -22.57 16 9 C 0.14 4.68 7.48 86.63 0.65 5.33 16 10 C -0.15 -5.72 6.96 30.34 0.21 -5.51 16 11 C 0.44 23.80 7.46 87.93 0.66 24.45 16 12 O -0.59 -37.20 15.21 -3.04 -0.05 -37.24 16 13 N -0.25 -13.35 2.97 -307.38 -0.91 -14.26 16 14 C -0.33 -18.36 5.89 84.04 0.49 -17.87 16 15 H 0.08 4.25 7.78 -2.91 -0.02 4.23 16 16 C 0.01 0.84 4.18 84.93 0.35 1.19 16 17 N -0.84 -50.94 11.26 21.66 0.24 -50.69 16 18 Si 0.98 45.16 29.60 68.60 2.03 47.19 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H 0.06 3.08 5.85 -2.39 -0.01 3.06 16 23 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 24 H 0.03 1.54 7.09 -2.39 -0.02 1.52 16 25 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 26 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.87 276.33 5.29 -68.58 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.11 Total: 14.98 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 3.94 Total: -5.98 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -1.74 Total: -87.53 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.05 Total: -37.24 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.87 5.29 -68.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.082 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds