Wall clock time and date at job start Mon Mar 30 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47122 * 2 1 4 4 C 1.50700 * 109.47179 * 240.00334 * 2 1 3 5 5 H 1.08001 * 119.99806 * 239.99639 * 4 2 1 6 6 C 1.37872 * 120.00154 * 59.99612 * 4 2 1 7 7 N 1.31518 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47107 * 270.00032 * 8 6 4 10 10 H 1.48496 * 109.47277 * 30.00268 * 8 6 4 11 11 H 1.48499 * 109.47152 * 150.00244 * 8 6 4 12 12 N 1.46500 * 109.47332 * 119.99559 * 2 1 3 13 13 C 1.39998 * 119.65003 * 244.80930 * 12 2 1 14 14 C 1.38658 * 120.68177 * 14.48129 * 13 12 2 15 15 C 1.38305 * 119.82721 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.35939 * 359.73509 * 15 14 13 17 17 C 1.38363 * 120.18512 * 359.91065 * 16 15 14 18 18 C 1.38337 * 119.72935 * 0.02562 * 17 16 15 19 19 N 1.40186 * 121.08664 * 180.18883 * 18 17 16 20 20 C 1.47050 * 117.89809 * 150.51675 * 19 18 17 21 21 C 1.34651 * 119.63654 * 65.08676 * 12 2 1 22 22 O 1.21300 * 119.60848 * 2.40682 * 21 12 2 23 23 H 1.08996 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47157 * 299.99966 * 1 2 3 25 25 H 1.09001 * 109.47332 * 60.00289 * 1 2 3 26 26 H 0.96996 * 120.00409 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.10582 * 359.71759 * 14 13 12 28 28 H 1.07997 * 119.82074 * 179.75624 * 15 14 13 29 29 H 1.08007 * 119.90657 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.13678 * 180.02562 * 17 16 15 31 31 H 0.96999 * 121.05382 * 330.49645 * 19 18 17 32 32 H 1.08997 * 109.53938 * 282.11872 * 20 19 18 33 33 H 1.08998 * 109.54209 * 161.84884 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.6296 -0.5458 -4.4124 10 1 2.4858 -2.5661 -3.7120 11 1 1.3431 -0.9492 -5.1120 12 7 2.0184 -0.6905 1.1962 13 6 2.7375 0.0229 2.1626 14 6 2.7412 1.4094 2.1612 15 6 3.4573 2.0964 3.1246 16 6 4.1653 1.4079 4.0927 17 6 4.1610 0.0243 4.1056 18 6 3.4455 -0.6685 3.1455 19 7 3.4182 -2.0700 3.1343 20 6 2.2197 -2.7306 2.5962 21 6 1.7755 -2.0058 1.3516 22 8 1.1931 -2.6148 0.4791 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1614 -3.4844 27 1 2.1898 1.9519 1.4075 28 1 3.4634 3.1763 3.1211 29 1 4.7224 1.9517 4.8413 30 1 4.7139 -0.5126 4.8623 31 1 4.1664 -2.5878 3.4705 32 1 1.4226 -2.7010 3.3391 33 1 2.4533 -3.7666 2.3512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:26 Heat of formation + Delta-G solvation = 11.493816 kcal Electronic energy + Delta-G solvation = -18093.169160 eV Core-core repulsion = 15312.154606 eV Total energy + Delta-G solvation = -2781.014554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45091 -38.05122 -35.46329 -34.95712 -32.81926 -30.12021 -29.52256 -28.75820 -25.67364 -25.10827 -23.08472 -22.26018 -20.46877 -18.49289 -17.74730 -16.92483 -16.39767 -15.50566 -15.04642 -14.58265 -14.25515 -14.09795 -13.75082 -13.46209 -13.17644 -12.62992 -12.40139 -12.24236 -11.57435 -11.38719 -11.20615 -10.87655 -10.84748 -10.62939 -10.30830 -10.12192 -9.93415 -9.60182 -9.11116 -8.73661 -8.33447 -7.79233 -6.76365 -6.02959 -4.05631 1.70649 1.81911 3.23072 3.32413 3.38206 3.44736 3.58771 3.84803 4.27657 4.46576 4.85375 5.12763 5.28855 5.36104 5.45536 5.58464 5.68555 5.76456 5.96149 6.20682 6.46400 6.58917 6.70954 6.87550 6.95621 7.03635 7.07120 7.11937 7.43333 7.64558 7.75432 7.91973 8.02696 8.10516 8.46097 8.84249 8.97272 9.57388 11.03189 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.008297 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.195724 B = 3374.093038 C = 3840.975104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.259 3.741 3 H 0.055 0.945 4 C -0.499 4.499 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.531 5.531 13 C 0.132 3.868 14 C -0.126 4.126 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.148 4.148 18 C 0.146 3.854 19 N -0.758 5.758 20 C 0.115 3.885 21 C 0.492 3.508 22 O -0.499 6.499 23 H 0.045 0.955 24 H 0.008 0.992 25 H 0.096 0.904 26 H 0.262 0.738 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.403 0.597 32 H 0.077 0.923 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -0.638 13.170 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.538 4.538 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.253 5.253 13 C 0.032 3.968 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.397 5.397 20 C -0.014 4.014 21 C 0.278 3.722 22 O -0.372 6.372 23 H 0.064 0.936 24 H 0.027 0.973 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.239 0.761 32 H 0.095 0.905 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.241 -0.977 12.359 13.103 hybrid contribution 0.617 -0.627 -0.739 1.149 sum 4.858 -1.604 11.621 12.697 Atomic orbital electron populations 1.22120 0.97547 1.00968 1.00512 1.19168 0.91784 0.93057 0.79943 0.92713 1.21156 1.30857 1.12102 0.89642 0.92242 1.24820 0.95172 0.95105 0.98891 1.69853 1.37054 1.23065 1.23687 0.86437 0.78339 0.80190 0.82160 1.20772 1.19886 1.21118 1.46167 1.49789 1.08680 1.20628 1.17895 0.97163 0.91901 0.89805 1.20906 1.01804 0.91707 1.00379 1.20793 0.98834 0.99431 0.95663 1.20746 1.01070 0.93348 0.99552 1.20400 1.04147 0.94221 0.98257 1.17445 0.99607 0.83670 0.94810 1.44238 1.19929 1.02455 1.73052 1.21663 0.88797 0.97363 0.93550 1.20793 0.80361 0.82255 0.88777 1.90761 1.39704 1.65073 1.41626 0.93580 0.97295 0.88603 0.92811 0.84783 0.86280 0.86513 0.86272 0.76075 0.90487 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.97 37.16 0.33 -3.55 16 2 C 0.26 6.66 2.38 -69.08 -0.16 6.50 16 3 H 0.06 1.44 5.68 -51.93 -0.29 1.15 16 4 C -0.50 -14.31 7.39 -34.44 -0.25 -14.56 16 5 H 0.06 1.79 7.03 -52.49 -0.37 1.42 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.53 -11.93 2.64 -107.50 -0.28 -12.21 16 13 C 0.13 2.56 6.43 -83.51 -0.54 2.02 16 14 C -0.13 -2.26 9.20 -39.40 -0.36 -2.62 16 15 C -0.13 -1.84 10.03 -39.54 -0.40 -2.24 16 16 C -0.13 -1.65 10.04 -39.52 -0.40 -2.05 16 17 C -0.15 -1.99 10.00 -39.50 -0.39 -2.39 16 18 C 0.15 2.36 6.47 -83.54 -0.54 1.82 16 19 N -0.76 -10.80 5.90 -59.27 -0.35 -11.15 16 20 C 0.11 1.77 7.25 -4.88 -0.04 1.74 16 21 C 0.49 10.68 6.90 -11.03 -0.08 10.60 16 22 O -0.50 -12.69 14.00 5.54 0.08 -12.61 16 23 H 0.05 1.21 6.59 -51.93 -0.34 0.87 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.10 2.60 6.07 -51.93 -0.32 2.29 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.13 2.52 6.15 -52.49 -0.32 2.20 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 31 H 0.40 4.47 8.96 -40.82 -0.37 4.11 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -31.87 272.47 -7.45 -39.32 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.68 Total: 3.28 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.92 Total: -3.08 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.01 Total: -48.39 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.87 -7.45 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.811 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds