Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47122 * 2 1 4 4 C 1.50700 * 109.47179 * 240.00334 * 2 1 3 5 5 H 1.08001 * 119.99806 * 239.99639 * 4 2 1 6 6 C 1.37872 * 120.00154 * 59.99612 * 4 2 1 7 7 N 1.31518 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47107 * 270.00032 * 8 6 4 10 10 H 1.48496 * 109.47277 * 30.00268 * 8 6 4 11 11 H 1.48499 * 109.47152 * 150.00244 * 8 6 4 12 12 N 1.46500 * 109.47332 * 119.99559 * 2 1 3 13 13 C 1.39998 * 119.65003 * 244.80930 * 12 2 1 14 14 C 1.38658 * 120.68177 * 14.48129 * 13 12 2 15 15 C 1.38305 * 119.82721 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.35939 * 359.73509 * 15 14 13 17 17 C 1.38363 * 120.18512 * 359.91065 * 16 15 14 18 18 C 1.38337 * 119.72935 * 0.02562 * 17 16 15 19 19 N 1.40186 * 121.08664 * 180.18883 * 18 17 16 20 20 C 1.47050 * 117.89809 * 150.51675 * 19 18 17 21 21 C 1.34651 * 119.63654 * 65.08676 * 12 2 1 22 22 O 1.21300 * 119.60848 * 2.40682 * 21 12 2 23 23 H 1.08996 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47157 * 299.99966 * 1 2 3 25 25 H 1.09001 * 109.47332 * 60.00289 * 1 2 3 26 26 H 0.96996 * 120.00409 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.10582 * 359.71759 * 14 13 12 28 28 H 1.07997 * 119.82074 * 179.75624 * 15 14 13 29 29 H 1.08007 * 119.90657 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.13678 * 180.02562 * 17 16 15 31 31 H 0.96999 * 121.05382 * 330.49645 * 19 18 17 32 32 H 1.08997 * 109.53938 * 282.11872 * 20 19 18 33 33 H 1.08998 * 109.54209 * 161.84884 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.6296 -0.5458 -4.4124 10 1 2.4858 -2.5661 -3.7120 11 1 1.3431 -0.9492 -5.1120 12 7 2.0184 -0.6905 1.1962 13 6 2.7375 0.0229 2.1626 14 6 2.7412 1.4094 2.1612 15 6 3.4573 2.0964 3.1246 16 6 4.1653 1.4079 4.0927 17 6 4.1610 0.0243 4.1056 18 6 3.4455 -0.6685 3.1455 19 7 3.4182 -2.0700 3.1343 20 6 2.2197 -2.7306 2.5962 21 6 1.7755 -2.0058 1.3516 22 8 1.1931 -2.6148 0.4791 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1614 -3.4844 27 1 2.1898 1.9519 1.4075 28 1 3.4634 3.1763 3.1211 29 1 4.7224 1.9517 4.8413 30 1 4.7139 -0.5126 4.8623 31 1 4.1664 -2.5878 3.4705 32 1 1.4226 -2.7010 3.3391 33 1 2.4533 -3.7666 2.3512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = -10.004095 kcal Electronic energy + Delta-G solvation = -18094.101379 eV Core-core repulsion = 15312.154606 eV Total energy + Delta-G solvation = -2781.946773 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91551 -39.49170 -37.07630 -36.35954 -34.77197 -31.74980 -30.94019 -30.19813 -27.41444 -26.91589 -24.59329 -23.60331 -22.12092 -19.96096 -19.19856 -18.47233 -18.03675 -17.25742 -16.72928 -16.00742 -15.77744 -15.58050 -15.08962 -14.96924 -14.79081 -14.14030 -13.98572 -13.68857 -13.44743 -13.12232 -12.91598 -12.78209 -12.45583 -12.41294 -12.22326 -11.89363 -11.50395 -11.23224 -10.79954 -10.62539 -10.30060 -9.10455 -8.24677 -8.07012 -6.29388 0.44096 0.63127 1.32063 1.34565 1.45329 1.75652 2.08780 2.39237 2.59710 3.04080 3.07800 3.48455 3.94234 4.27388 4.28194 4.42564 4.48425 4.63514 4.66928 4.73488 4.83135 4.95810 4.99880 5.21368 5.33845 5.45976 5.56543 5.73749 5.77571 5.91057 5.96265 6.06162 6.24340 6.65350 6.81448 6.91101 7.24243 7.40566 8.85067 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.008297 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.195724 B = 3374.093038 C = 3840.975104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.264 3.736 3 H 0.041 0.959 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.540 5.540 13 C 0.082 3.918 14 C -0.146 4.146 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.137 4.137 18 C 0.142 3.858 19 N -0.748 5.748 20 C 0.129 3.871 21 C 0.474 3.526 22 O -0.555 6.555 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.266 0.734 27 H 0.108 0.892 28 H 0.143 0.857 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.422 0.578 32 H 0.100 0.900 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -0.592 15.658 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.163 3.837 3 H 0.059 0.941 4 C -0.554 4.554 5 H 0.054 0.946 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.016 4.016 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.128 4.128 17 C -0.159 4.159 18 C 0.041 3.959 19 N -0.388 5.388 20 C 0.001 3.999 21 C 0.263 3.737 22 O -0.432 6.432 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.261 0.739 32 H 0.118 0.882 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.303 -0.908 14.907 16.210 hybrid contribution 0.054 -0.534 -1.391 1.491 sum 6.357 -1.443 13.515 15.005 Atomic orbital electron populations 1.21892 0.97830 0.99538 1.00259 1.18783 0.91510 0.92425 0.80970 0.94103 1.21274 1.31070 1.11553 0.91484 0.94639 1.25549 0.95429 0.95874 1.01420 1.69941 1.37398 1.23734 1.24415 0.85562 0.78568 0.78405 0.79124 1.19403 1.20937 1.19899 1.46018 1.50450 1.09304 1.20434 1.18286 0.99652 0.92624 0.91044 1.20932 1.02963 0.91589 1.01210 1.21101 0.98079 1.00756 0.94961 1.21277 0.99138 0.93450 0.98895 1.20867 1.02710 0.94627 0.97699 1.17681 0.99260 0.84499 0.94494 1.44172 1.20232 1.01941 1.72503 1.21612 0.89991 0.97454 0.90885 1.22006 0.79430 0.81970 0.90310 1.90713 1.42381 1.66045 1.44072 0.95382 0.95483 0.90709 0.92481 0.87360 0.83889 0.82257 0.82354 0.73870 0.88235 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.31 8.97 71.98 0.65 -6.66 16 2 C 0.26 14.29 2.38 44.24 0.11 14.40 16 3 H 0.04 2.30 5.68 -2.38 -0.01 2.29 16 4 C -0.52 -30.95 7.39 25.60 0.19 -30.77 16 5 H 0.04 2.25 7.03 -2.91 -0.02 2.23 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.96 47.02 29.54 68.60 2.03 49.05 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.54 -25.14 2.64 -612.47 -1.62 -26.76 16 13 C 0.08 3.17 6.43 38.24 0.25 3.42 16 14 C -0.15 -5.25 9.20 22.39 0.21 -5.04 16 15 C -0.13 -3.42 10.03 22.30 0.22 -3.20 16 16 C -0.11 -2.29 10.04 22.31 0.22 -2.06 16 17 C -0.14 -3.04 10.00 22.32 0.22 -2.81 16 18 C 0.14 4.26 6.47 38.13 0.25 4.50 16 19 N -0.75 -19.21 5.90 -341.43 -2.01 -21.22 16 20 C 0.13 3.79 7.25 85.54 0.62 4.41 16 21 C 0.47 21.11 6.90 87.68 0.61 21.72 16 22 O -0.56 -29.60 14.00 -3.09 -0.04 -29.64 16 23 H 0.03 1.55 6.59 -2.39 -0.02 1.53 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 4.27 6.07 -2.39 -0.01 4.26 16 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.11 4.34 6.15 -2.91 -0.02 4.32 16 28 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.42 7.72 8.96 -92.71 -0.83 6.89 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.62 272.47 2.89 -70.73 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.31 Total: 12.23 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 3.98 Total: -0.71 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.39 Total: -101.67 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.04 Total: -29.64 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.62 2.89 -70.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.731 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds