Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.48697 * 2 1 4 4 C 1.53986 * 110.32359 * 122.54685 * 2 1 3 5 5 C 1.51198 * 104.30712 * 119.07026 * 4 2 1 6 6 O 1.21277 * 125.58399 * 179.75858 * 5 4 2 7 7 N 1.34051 * 108.82472 * 359.75343 * 5 4 2 8 8 N 1.39338 * 113.07437 * 359.97438 * 7 5 4 9 9 C 1.39687 * 125.33998 * 179.97438 * 8 7 5 10 10 C 1.39328 * 119.95603 * 180.02562 * 9 8 7 11 11 C 1.38479 * 120.42617 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32434 * 0.02562 * 11 10 9 13 13 C 1.40755 * 119.89404 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.20773 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99889 * 205.16917 * 14 13 12 16 16 C 1.39932 * 119.99943 * 25.17253 * 14 13 12 17 17 N 1.30827 * 120.00459 * 27.11337 * 16 14 13 18 18 Si 1.86804 * 119.99813 * 206.84073 * 16 14 13 19 19 H 1.48494 * 109.47478 * 59.99640 * 18 16 14 20 20 H 1.48501 * 109.47147 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46755 * 299.99568 * 18 16 14 22 22 C 1.38284 * 119.94782 * 0.28434 * 9 8 7 23 23 H 1.08998 * 109.46863 * 182.47542 * 1 2 3 24 24 H 1.09001 * 109.46654 * 302.47187 * 1 2 3 25 25 H 1.08993 * 109.46977 * 62.47201 * 1 2 3 26 26 H 1.08996 * 110.67282 * 0.25832 * 4 2 1 27 27 H 1.09000 * 110.36459 * 237.72369 * 4 2 1 28 28 H 0.96994 * 123.46688 * 179.97438 * 7 5 4 29 29 H 1.08001 * 119.79040 * 359.97386 * 10 9 8 30 30 H 1.07997 * 119.83852 * 179.97438 * 11 10 9 31 31 H 1.07999 * 120.05499 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99484 * 3.91163 * 17 16 14 33 33 H 1.07998 * 120.15966 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9116 1.0211 0.0000 4 6 2.0649 -0.7769 1.2172 5 6 2.8622 -1.9118 0.6153 6 8 3.4586 -2.7638 1.2390 7 7 2.8017 -1.8218 -0.7209 8 7 2.0426 -0.7397 -1.1616 9 6 1.8114 -0.4058 -2.4981 10 6 1.0322 0.7056 -2.8128 11 6 0.7963 1.0451 -4.1344 12 6 1.3293 0.2871 -5.1527 13 6 2.1185 -0.8385 -4.8502 14 6 2.6688 -1.6220 -5.8908 15 1 2.9106 -2.6598 -5.7152 16 6 2.9000 -1.0526 -7.1480 17 7 3.1264 0.2316 -7.2529 18 14 2.8927 -2.1276 -8.6757 19 1 1.5662 -2.7800 -8.8158 20 1 3.1617 -1.2897 -9.8719 21 1 3.9455 -3.1679 -8.5539 22 6 2.3518 -1.1819 -3.5070 23 1 -0.3633 -1.0267 0.0444 24 1 -0.3633 0.5518 0.8670 25 1 -0.3633 0.4749 -0.9113 26 1 1.2423 -1.1654 1.8175 27 1 2.7084 -0.1380 1.8221 28 1 3.2411 -2.4459 -1.3194 29 1 0.6088 1.3056 -2.0209 30 1 0.1906 1.9083 -4.3675 31 1 1.1422 0.5557 -6.1819 32 1 3.1905 0.7795 -6.4551 33 1 2.9521 -2.0462 -3.2642 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = 21.434336 kcal Electronic energy + Delta-G solvation = -17402.841847 eV Core-core repulsion = 14622.258347 eV Total energy + Delta-G solvation = -2780.583500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51549 -38.01825 -36.70737 -33.99673 -33.12876 -31.19660 -29.75571 -27.70609 -26.89907 -25.15285 -22.03912 -21.62499 -20.44981 -20.25736 -18.51694 -17.00069 -16.20498 -15.66063 -15.13575 -14.86901 -14.18119 -14.09506 -13.75010 -13.58649 -13.16984 -12.86386 -12.63079 -12.20510 -12.04769 -11.86738 -11.50648 -11.24233 -11.07287 -10.55598 -10.46004 -10.36871 -10.07761 -9.87532 -9.52531 -9.03930 -8.50054 -7.75226 -7.29721 -6.42520 -4.54411 2.31871 2.54236 2.72431 2.90076 3.13187 3.24399 3.33656 3.97235 4.18720 4.43984 4.49785 4.60336 4.89399 5.28598 5.43965 5.48551 5.58373 5.74906 5.91292 6.01419 6.13431 6.34885 6.43144 6.69536 6.78015 6.93001 7.03701 7.41932 7.55340 7.63226 7.79267 7.83021 7.96322 8.15832 8.26687 8.57672 8.72253 8.85547 9.98494 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033025 B = 0.005899 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.637092 B = 4745.543089 C = 5399.128819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.162 4.162 5 C 0.518 3.482 6 O -0.542 6.542 7 N -0.508 5.508 8 N -0.451 5.451 9 C 0.256 3.744 10 C -0.305 4.305 11 C -0.049 4.049 12 C -0.249 4.249 13 C 0.130 3.870 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.041 3.959 17 N -0.790 5.790 18 Si 1.065 2.935 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.294 4.294 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.424 0.576 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.301 0.699 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 1.436 8.610 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.054 3.946 3 H 0.103 0.897 4 C -0.203 4.203 5 C 0.302 3.698 6 O -0.419 6.419 7 N -0.250 5.250 8 N -0.261 5.261 9 C 0.161 3.839 10 C -0.329 4.329 11 C -0.068 4.068 12 C -0.269 4.269 13 C 0.126 3.874 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.182 4.182 17 N -0.412 5.412 18 Si 0.888 3.112 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.318 4.318 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.268 0.732 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.441 1.135 7.415 8.253 hybrid contribution 0.075 -0.306 1.413 1.448 sum -3.367 0.828 8.828 9.485 Atomic orbital electron populations 1.22408 0.94186 1.02905 1.03488 1.21450 0.94867 0.95477 0.82780 0.89690 1.22595 1.01724 0.97323 0.98632 1.20055 0.81628 0.86638 0.81440 1.90787 1.46968 1.40118 1.64031 1.44963 1.48816 1.24288 1.06958 1.46037 1.54263 1.22486 1.03356 1.17195 0.94871 0.94234 0.77613 1.19762 1.14427 1.02739 0.95968 1.20352 0.97136 0.97136 0.92198 1.21065 1.06495 1.01527 0.97826 1.17348 0.88355 0.90602 0.91100 1.20557 1.38547 0.99374 0.96391 0.90689 1.27020 0.91235 0.97141 1.02811 1.70467 1.27041 1.06862 1.36851 0.83638 0.78051 0.75232 0.74250 1.19910 1.19803 1.20152 1.20226 1.13943 1.05551 0.92081 0.92206 0.91415 0.90001 0.87048 0.87234 0.73232 0.88270 0.88717 0.87777 0.88570 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.97 37.16 0.33 -1.69 16 2 C 0.16 2.10 3.37 -67.17 -0.23 1.88 16 3 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.16 -1.92 6.60 -27.12 -0.18 -2.10 16 5 C 0.52 8.33 8.63 -11.07 -0.10 8.23 16 6 O -0.54 -10.29 18.03 5.56 0.10 -10.19 16 7 N -0.51 -8.63 6.55 31.22 0.20 -8.43 16 8 N -0.45 -7.90 3.82 -51.44 -0.20 -8.10 16 9 C 0.26 5.37 6.57 -83.86 -0.55 4.82 16 10 C -0.31 -6.18 8.61 -39.09 -0.34 -6.52 16 11 C -0.05 -1.06 10.01 -39.70 -0.40 -1.45 16 12 C -0.25 -6.10 7.97 -38.83 -0.31 -6.41 16 13 C 0.13 3.33 5.29 -106.85 -0.57 2.76 16 14 C -0.52 -13.55 8.97 -37.74 -0.34 -13.89 16 15 H 0.07 1.91 7.97 -52.49 -0.42 1.50 16 16 C 0.04 1.02 4.89 -17.35 -0.08 0.93 16 17 N -0.79 -20.48 12.38 55.55 0.69 -19.79 16 18 Si 1.06 21.12 30.01 -169.99 -5.10 16.02 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 22 C -0.29 -6.96 9.37 -38.68 -0.36 -7.32 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.09 5.33 -51.93 -0.28 0.81 16 26 H 0.11 1.10 7.72 -51.93 -0.40 0.70 16 27 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.42 7.18 7.62 -183.18 -1.40 5.78 16 29 H 0.10 1.72 5.53 -52.49 -0.29 1.43 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.64 6.53 -52.49 -0.34 2.30 16 32 H 0.30 7.99 6.72 -40.82 -0.27 7.72 16 33 H 0.09 2.01 6.78 -52.49 -0.36 1.65 16 LS Contribution 276.21 15.07 4.16 4.16 Total: -1.00 -28.79 276.21 -7.92 -36.71 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.66 Total: 10.38 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.11 Total: -20.77 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.70 Total: -36.32 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.10 Total: -10.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.10 Total: 16.02 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.79 -7.92 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.143 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds