Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.48697 * 2 1 4 4 C 1.53986 * 110.32359 * 122.54685 * 2 1 3 5 5 C 1.51198 * 104.30712 * 119.07026 * 4 2 1 6 6 O 1.21277 * 125.58399 * 179.75858 * 5 4 2 7 7 N 1.34051 * 108.82472 * 359.75343 * 5 4 2 8 8 N 1.39338 * 113.07437 * 359.97438 * 7 5 4 9 9 C 1.39687 * 125.33998 * 179.97438 * 8 7 5 10 10 C 1.39328 * 119.95603 * 180.02562 * 9 8 7 11 11 C 1.38479 * 120.42617 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32434 * 0.02562 * 11 10 9 13 13 C 1.40755 * 119.89404 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.20773 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99889 * 205.16917 * 14 13 12 16 16 C 1.39932 * 119.99943 * 25.17253 * 14 13 12 17 17 N 1.30827 * 120.00459 * 27.11337 * 16 14 13 18 18 Si 1.86804 * 119.99813 * 206.84073 * 16 14 13 19 19 H 1.48494 * 109.47478 * 59.99640 * 18 16 14 20 20 H 1.48501 * 109.47147 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46755 * 299.99568 * 18 16 14 22 22 C 1.38284 * 119.94782 * 0.28434 * 9 8 7 23 23 H 1.08998 * 109.46863 * 182.47542 * 1 2 3 24 24 H 1.09001 * 109.46654 * 302.47187 * 1 2 3 25 25 H 1.08993 * 109.46977 * 62.47201 * 1 2 3 26 26 H 1.08996 * 110.67282 * 0.25832 * 4 2 1 27 27 H 1.09000 * 110.36459 * 237.72369 * 4 2 1 28 28 H 0.96994 * 123.46688 * 179.97438 * 7 5 4 29 29 H 1.08001 * 119.79040 * 359.97386 * 10 9 8 30 30 H 1.07997 * 119.83852 * 179.97438 * 11 10 9 31 31 H 1.07999 * 120.05499 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99484 * 3.91163 * 17 16 14 33 33 H 1.07998 * 120.15966 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9116 1.0211 0.0000 4 6 2.0649 -0.7769 1.2172 5 6 2.8622 -1.9118 0.6153 6 8 3.4586 -2.7638 1.2390 7 7 2.8017 -1.8218 -0.7209 8 7 2.0426 -0.7397 -1.1616 9 6 1.8114 -0.4058 -2.4981 10 6 1.0322 0.7056 -2.8128 11 6 0.7963 1.0451 -4.1344 12 6 1.3293 0.2871 -5.1527 13 6 2.1185 -0.8385 -4.8502 14 6 2.6688 -1.6220 -5.8908 15 1 2.9106 -2.6598 -5.7152 16 6 2.9000 -1.0526 -7.1480 17 7 3.1264 0.2316 -7.2529 18 14 2.8927 -2.1276 -8.6757 19 1 1.5662 -2.7800 -8.8158 20 1 3.1617 -1.2897 -9.8719 21 1 3.9455 -3.1679 -8.5539 22 6 2.3518 -1.1819 -3.5070 23 1 -0.3633 -1.0267 0.0444 24 1 -0.3633 0.5518 0.8670 25 1 -0.3633 0.4749 -0.9113 26 1 1.2423 -1.1654 1.8175 27 1 2.7084 -0.1380 1.8221 28 1 3.2411 -2.4459 -1.3194 29 1 0.6088 1.3056 -2.0209 30 1 0.1906 1.9083 -4.3675 31 1 1.1422 0.5557 -6.1819 32 1 3.1905 0.7795 -6.4551 33 1 2.9521 -2.0462 -3.2642 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = 3.649991 kcal Electronic energy + Delta-G solvation = -17403.613034 eV Core-core repulsion = 14622.258347 eV Total energy + Delta-G solvation = -2781.354688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81656 -39.65750 -38.20133 -35.77421 -34.28571 -32.76877 -31.54578 -28.92422 -28.26917 -26.99645 -23.44640 -23.18864 -21.83708 -21.72996 -20.18216 -18.62449 -17.41833 -17.05030 -16.78289 -16.34332 -15.73840 -15.54535 -15.25083 -15.08041 -14.51171 -14.30629 -14.09111 -13.63614 -13.53951 -13.19299 -12.77620 -12.67125 -12.43788 -12.08971 -11.95750 -11.84340 -11.77968 -11.28346 -11.16731 -10.85150 -10.11773 -9.59600 -9.21182 -7.97553 -6.49259 0.94237 0.95188 0.99323 1.41240 1.50247 1.65213 1.79554 2.32332 2.68346 3.00970 3.30116 3.51436 3.58123 3.98572 4.25678 4.33729 4.53963 4.61579 4.67592 4.75558 4.87765 4.97037 5.03430 5.07392 5.28831 5.32957 5.39954 5.67136 5.70864 5.81567 5.98664 6.11043 6.31280 6.53214 6.62361 6.81377 6.94024 7.22474 8.03737 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033025 B = 0.005899 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.637092 B = 4745.543089 C = 5399.128819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.105 0.895 4 C -0.147 4.147 5 C 0.513 3.487 6 O -0.575 6.575 7 N -0.519 5.519 8 N -0.451 5.451 9 C 0.261 3.739 10 C -0.288 4.288 11 C -0.047 4.047 12 C -0.275 4.275 13 C 0.104 3.896 14 C -0.563 4.563 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.812 5.812 18 Si 1.115 2.885 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.317 4.317 23 H 0.050 0.950 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.417 0.583 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.285 0.715 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 2.562 10.793 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.122 0.878 4 C -0.186 4.186 5 C 0.300 3.700 6 O -0.454 6.454 7 N -0.261 5.261 8 N -0.260 5.260 9 C 0.163 3.837 10 C -0.311 4.311 11 C -0.065 4.065 12 C -0.296 4.296 13 C 0.101 3.899 14 C -0.591 4.591 15 H 0.083 0.917 16 C -0.209 4.209 17 N -0.435 5.435 18 Si 0.932 3.068 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.342 4.342 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.259 0.741 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.756 2.276 9.666 11.011 hybrid contribution 0.431 -0.619 1.013 1.263 sum -4.326 1.657 10.680 11.641 Atomic orbital electron populations 1.22393 0.92610 1.02884 1.04606 1.21944 0.96068 0.96001 0.81345 0.87759 1.22691 1.02217 0.95485 0.98215 1.20787 0.81155 0.87127 0.80908 1.90770 1.48430 1.41760 1.64454 1.45213 1.48970 1.24319 1.07580 1.46211 1.53791 1.22696 1.03330 1.17235 0.93829 0.93674 0.78920 1.20202 1.12516 1.01970 0.96457 1.20730 0.96372 0.97307 0.92138 1.21015 1.08165 1.02530 0.97881 1.17669 0.88859 0.91374 0.92027 1.20721 1.41163 0.99241 0.98005 0.91748 1.28345 0.89676 0.97569 1.05343 1.70577 1.29599 1.07500 1.35783 0.83031 0.78863 0.74004 0.70897 1.18864 1.19295 1.18644 1.20322 1.15072 1.06319 0.92449 0.93122 0.87374 0.91407 0.84306 0.84233 0.74109 0.84277 0.85593 0.89660 0.90270 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.97 71.98 0.65 -2.47 16 2 C 0.15 3.28 3.37 45.24 0.15 3.43 16 3 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.15 -2.81 6.60 30.34 0.20 -2.61 16 5 C 0.51 15.48 8.63 87.93 0.76 16.24 16 6 O -0.58 -21.20 18.03 -3.02 -0.05 -21.25 16 7 N -0.52 -17.19 6.55 -173.94 -1.14 -18.33 16 8 N -0.45 -14.83 3.82 -316.65 -1.21 -16.04 16 9 C 0.26 10.66 6.57 38.16 0.25 10.91 16 10 C -0.29 -10.89 8.61 22.59 0.19 -10.69 16 11 C -0.05 -1.94 10.01 22.20 0.22 -1.72 16 12 C -0.28 -13.85 7.97 22.75 0.18 -13.67 16 13 C 0.10 5.57 5.29 -21.31 -0.11 5.45 16 14 C -0.56 -30.92 8.97 23.46 0.21 -30.71 16 15 H 0.06 3.51 7.97 -2.91 -0.02 3.49 16 16 C 0.01 0.40 4.89 85.25 0.42 0.82 16 17 N -0.81 -43.95 12.38 21.82 0.27 -43.68 16 18 Si 1.11 43.66 30.01 68.60 2.06 45.72 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.32 -15.43 9.37 22.86 0.21 -15.22 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.48 5.33 -2.39 -0.01 1.47 16 26 H 0.14 1.99 7.72 -2.39 -0.02 1.97 16 27 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.42 14.44 7.62 -213.82 -1.63 12.81 16 29 H 0.14 4.14 5.53 -2.91 -0.02 4.13 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.09 4.53 6.53 -2.91 -0.02 4.51 16 32 H 0.29 16.00 6.72 -92.71 -0.62 15.38 16 33 H 0.08 3.93 6.78 -2.91 -0.02 3.91 16 Total: -1.00 -66.00 276.21 2.92 -63.08 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.34 Total: 30.74 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.34 Total: -40.24 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.08 Total: -78.05 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.06 Total: 45.72 kcal Total: -66.00 2.92 -63.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.730 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds