Wall clock time and date at job start Mon Mar 30 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.48593 * 2 1 4 4 C 1.53980 * 110.54971 * 237.58015 * 2 1 3 5 5 C 1.51190 * 104.31604 * 241.57801 * 4 2 1 6 6 O 1.21282 * 125.58868 * 179.75388 * 5 4 2 7 7 N 1.34053 * 108.82058 * 359.75622 * 5 4 2 8 8 N 1.39346 * 113.07483 * 359.97438 * 7 5 4 9 9 C 1.38733 * 125.33381 * 179.97438 * 8 7 5 10 10 C 1.38749 * 120.29088 * 125.03204 * 9 8 7 11 11 C 1.38160 * 120.02575 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.62598 * 359.97438 * 11 10 9 13 13 C 1.36441 * 120.59646 * 0.02562 * 12 11 10 14 14 C 1.40734 * 119.95090 * 359.69948 * 13 12 11 15 15 C 1.41047 * 120.30670 * 180.29933 * 14 13 12 16 16 H 1.07998 * 119.99724 * 154.26606 * 15 14 13 17 17 C 1.39931 * 120.00403 * 334.26647 * 15 14 13 18 18 N 1.30881 * 119.99724 * 343.52186 * 17 15 14 19 19 Si 1.86796 * 120.00200 * 163.51096 * 17 15 14 20 20 H 1.48497 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46899 * 120.00284 * 19 17 15 22 22 H 1.48496 * 109.47581 * 240.00230 * 19 17 15 23 23 H 1.08998 * 109.46854 * 297.52713 * 1 2 3 24 24 H 1.08990 * 109.46752 * 57.52157 * 1 2 3 25 25 H 1.08993 * 109.46916 * 177.52291 * 1 2 3 26 26 H 1.09010 * 110.67387 * 122.76453 * 4 2 1 27 27 H 1.09006 * 110.25486 * 0.19056 * 4 2 1 28 28 H 0.96992 * 123.46534 * 179.97438 * 7 5 4 29 29 H 1.08002 * 119.98611 * 359.97438 * 10 9 8 30 30 H 1.08001 * 119.69021 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.70084 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.02313 * 179.97438 * 13 12 11 33 33 H 0.96999 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0706 -0.7730 -1.2171 5 6 2.8547 -1.9170 -0.6153 6 8 3.4440 -2.7740 -1.2391 7 7 2.7917 -1.8288 0.7209 8 7 2.0435 -0.7390 1.1616 9 6 1.8134 -0.4079 2.4890 10 6 2.1347 0.8568 2.9607 11 6 1.9037 1.1804 4.2839 12 6 1.3496 0.2499 5.1537 13 6 1.0240 -1.0011 4.7170 14 6 1.2434 -1.3553 3.3727 15 6 0.9038 -2.6443 2.9117 16 1 0.6726 -2.8011 1.8685 17 6 0.8663 -3.7199 3.8060 18 7 1.4444 -3.6187 4.9758 19 14 -0.0089 -5.3001 3.3303 20 1 -0.5758 -5.1602 1.9649 21 1 0.9580 -6.4271 3.3513 22 1 -1.1041 -5.5695 4.2962 23 1 -0.3633 0.4750 0.9113 24 1 -0.3632 0.5518 -0.8669 25 1 -0.3633 -1.0266 -0.0444 26 1 2.7225 -0.1383 -1.8176 27 1 1.2455 -1.1520 -1.8202 28 1 3.2226 -2.4588 1.3194 29 1 2.5663 1.5882 2.2935 30 1 2.1562 2.1663 4.6454 31 1 1.1750 0.5190 6.1849 32 1 0.5941 -1.7175 5.4013 33 1 1.4182 -4.3641 5.5959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:40 Heat of formation + Delta-G solvation = 28.499497 kcal Electronic energy + Delta-G solvation = -17997.727578 eV Core-core repulsion = 15217.450445 eV Total energy + Delta-G solvation = -2780.277132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95778 -37.73843 -36.20150 -33.78864 -32.45617 -31.19544 -29.65941 -27.63242 -26.77257 -25.02860 -21.87852 -20.97726 -20.32713 -19.94560 -17.65182 -16.97251 -15.71569 -15.51261 -15.03682 -14.58037 -14.17682 -13.71099 -13.63205 -13.33660 -12.76919 -12.54315 -12.40740 -11.83484 -11.76952 -11.46465 -11.32270 -11.16966 -11.06165 -10.83988 -10.53471 -10.21558 -9.78893 -9.57428 -9.37872 -9.29525 -7.86090 -7.54584 -6.93305 -6.29686 -4.44685 2.58997 2.75026 3.02799 3.07982 3.10595 3.11622 3.14411 3.85836 4.51440 4.67792 4.92262 5.09169 5.24854 5.55316 5.66401 5.86454 5.95213 6.11323 6.13700 6.30438 6.34034 6.47065 6.61782 6.94940 6.98062 7.11913 7.19900 7.38200 7.64718 7.77994 7.98001 8.10593 8.30808 8.40295 8.56295 8.74765 8.83487 9.31136 10.05865 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.011546 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.667705 B = 2424.461986 C = 3590.239990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.072 0.928 4 C -0.161 4.161 5 C 0.507 3.493 6 O -0.561 6.561 7 N -0.489 5.489 8 N -0.450 5.450 9 C 0.060 3.940 10 C -0.097 4.097 11 C -0.227 4.227 12 C -0.111 4.111 13 C -0.149 4.149 14 C 0.101 3.899 15 C -0.449 4.449 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.790 5.790 19 Si 0.904 3.096 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.272 1.272 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.423 0.577 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 5.137 -4.624 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.090 0.910 4 C -0.202 4.202 5 C 0.291 3.709 6 O -0.440 6.440 7 N -0.227 5.227 8 N -0.266 5.266 9 C -0.033 4.033 10 C -0.119 4.119 11 C -0.247 4.247 12 C -0.130 4.130 13 C -0.169 4.169 14 C 0.096 3.904 15 C -0.479 4.479 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.415 5.415 19 Si 0.729 3.271 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.197 1.197 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.266 0.734 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.847 4.603 -4.791 6.896 hybrid contribution -0.255 -1.063 0.333 1.143 sum -2.102 3.541 -4.458 6.069 Atomic orbital electron populations 1.22206 0.95060 1.02577 1.01966 1.21270 0.94061 0.94892 0.83491 0.91012 1.22526 1.01449 0.97543 0.98651 1.19950 0.82198 0.86865 0.81931 1.90739 1.48322 1.40523 1.64446 1.45062 1.47523 1.23815 1.06322 1.44697 1.57484 1.22504 1.01921 1.16936 1.08876 0.95916 0.81556 1.20513 1.00427 0.96133 0.94798 1.20197 1.12015 0.98928 0.93584 1.20461 1.00605 0.94499 0.97478 1.20990 1.04170 0.95109 0.96585 1.17804 0.87849 0.93059 0.91728 1.19488 1.40246 0.91890 0.96265 0.90121 1.25930 0.93246 1.00816 0.94319 1.69837 1.31754 1.32640 1.07289 0.86309 0.79911 0.80871 0.80055 1.18438 1.19918 1.19663 0.91533 0.92233 0.92136 0.87995 0.87809 0.73396 0.89082 0.89151 0.89355 0.86275 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.15 37.16 0.34 -1.99 16 2 C 0.17 2.61 3.89 -67.18 -0.26 2.35 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.16 -2.35 6.62 -27.13 -0.18 -2.53 16 5 C 0.51 9.68 8.63 -11.07 -0.10 9.59 16 6 O -0.56 -12.37 18.03 5.56 0.10 -12.27 16 7 N -0.49 -9.81 5.73 31.22 0.18 -9.63 16 8 N -0.45 -8.83 3.10 -50.97 -0.16 -8.99 16 9 C 0.06 1.33 5.79 -83.29 -0.48 0.84 16 10 C -0.10 -2.00 9.79 -39.42 -0.39 -2.38 16 11 C -0.23 -4.68 10.03 -39.36 -0.40 -5.07 16 12 C -0.11 -2.43 9.96 -39.98 -0.40 -2.83 16 13 C -0.15 -3.59 8.63 -39.29 -0.34 -3.92 16 14 C 0.10 2.45 5.58 -106.63 -0.59 1.86 16 15 C -0.45 -11.05 7.96 -37.88 -0.30 -11.36 16 16 H 0.08 2.01 7.27 -52.49 -0.38 1.63 16 17 C 0.08 1.80 5.16 -17.32 -0.09 1.71 16 18 N -0.79 -19.37 10.96 55.55 0.61 -18.76 16 19 Si 0.90 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 27 H 0.10 1.35 7.71 -51.93 -0.40 0.95 16 28 H 0.42 8.89 8.77 -183.17 -1.61 7.28 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.12 3.00 6.20 -52.49 -0.33 2.67 16 33 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -27.33 282.91 -8.44 -35.78 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.22 Total: 9.88 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.18 Total: -13.74 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.63 Total: -37.38 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.10 Total: -12.27 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.33 -8.44 -35.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.276 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds