Wall clock time and date at job start Mon Mar 30 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.48593 * 2 1 4 4 C 1.53980 * 110.54971 * 237.58015 * 2 1 3 5 5 C 1.51190 * 104.31604 * 241.57801 * 4 2 1 6 6 O 1.21282 * 125.58868 * 179.75388 * 5 4 2 7 7 N 1.34053 * 108.82058 * 359.75622 * 5 4 2 8 8 N 1.39346 * 113.07483 * 359.97438 * 7 5 4 9 9 C 1.38733 * 125.33381 * 179.97438 * 8 7 5 10 10 C 1.38749 * 120.29088 * 125.03204 * 9 8 7 11 11 C 1.38160 * 120.02575 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.62598 * 359.97438 * 11 10 9 13 13 C 1.36441 * 120.59646 * 0.02562 * 12 11 10 14 14 C 1.40734 * 119.95090 * 359.69948 * 13 12 11 15 15 C 1.41047 * 120.30670 * 180.29933 * 14 13 12 16 16 H 1.07998 * 119.99724 * 154.26606 * 15 14 13 17 17 C 1.39931 * 120.00403 * 334.26647 * 15 14 13 18 18 N 1.30881 * 119.99724 * 343.52186 * 17 15 14 19 19 Si 1.86796 * 120.00200 * 163.51096 * 17 15 14 20 20 H 1.48497 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46899 * 120.00284 * 19 17 15 22 22 H 1.48496 * 109.47581 * 240.00230 * 19 17 15 23 23 H 1.08998 * 109.46854 * 297.52713 * 1 2 3 24 24 H 1.08990 * 109.46752 * 57.52157 * 1 2 3 25 25 H 1.08993 * 109.46916 * 177.52291 * 1 2 3 26 26 H 1.09010 * 110.67387 * 122.76453 * 4 2 1 27 27 H 1.09006 * 110.25486 * 0.19056 * 4 2 1 28 28 H 0.96992 * 123.46534 * 179.97438 * 7 5 4 29 29 H 1.08002 * 119.98611 * 359.97438 * 10 9 8 30 30 H 1.08001 * 119.69021 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.70084 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.02313 * 179.97438 * 13 12 11 33 33 H 0.96999 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0706 -0.7730 -1.2171 5 6 2.8547 -1.9170 -0.6153 6 8 3.4440 -2.7740 -1.2391 7 7 2.7917 -1.8288 0.7209 8 7 2.0435 -0.7390 1.1616 9 6 1.8134 -0.4079 2.4890 10 6 2.1347 0.8568 2.9607 11 6 1.9037 1.1804 4.2839 12 6 1.3496 0.2499 5.1537 13 6 1.0240 -1.0011 4.7170 14 6 1.2434 -1.3553 3.3727 15 6 0.9038 -2.6443 2.9117 16 1 0.6726 -2.8011 1.8685 17 6 0.8663 -3.7199 3.8060 18 7 1.4444 -3.6187 4.9758 19 14 -0.0089 -5.3001 3.3303 20 1 -0.5758 -5.1602 1.9649 21 1 0.9580 -6.4271 3.3513 22 1 -1.1041 -5.5695 4.2962 23 1 -0.3633 0.4750 0.9113 24 1 -0.3632 0.5518 -0.8669 25 1 -0.3633 -1.0266 -0.0444 26 1 2.7225 -0.1383 -1.8176 27 1 1.2455 -1.1520 -1.8202 28 1 3.2226 -2.4588 1.3194 29 1 2.5663 1.5882 2.2935 30 1 2.1562 2.1663 4.6454 31 1 1.1750 0.5190 6.1849 32 1 0.5941 -1.7175 5.4013 33 1 1.4182 -4.3641 5.5959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:39 Heat of formation + Delta-G solvation = 13.030912 kcal Electronic energy + Delta-G solvation = -17998.398346 eV Core-core repulsion = 15217.450445 eV Total energy + Delta-G solvation = -2780.947900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43503 -39.41408 -37.77126 -35.55190 -33.80495 -32.81597 -31.40351 -29.10076 -28.18521 -26.75620 -23.38601 -22.65169 -21.81213 -21.41776 -19.36622 -18.64561 -17.22800 -17.07250 -16.63699 -16.14450 -15.71020 -15.29223 -15.19705 -14.76583 -14.44173 -14.12994 -13.72189 -13.44448 -13.13568 -13.02245 -12.87758 -12.78048 -12.38445 -12.30040 -12.21550 -11.71289 -11.51574 -11.21687 -11.07954 -10.91159 -9.54307 -9.29813 -8.70032 -7.87764 -6.26991 0.89223 1.05324 1.32881 1.43522 1.46241 1.57660 1.64694 2.15301 2.74365 3.34430 3.56433 3.72179 3.89946 4.14656 4.47495 4.54156 4.65034 4.74719 4.79248 4.83162 5.02722 5.11879 5.17778 5.29999 5.41020 5.46440 5.51112 5.67493 5.93571 6.06057 6.23239 6.36105 6.59074 6.83437 6.88727 6.98848 7.14058 7.69310 8.30749 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.011546 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.667705 B = 2424.461986 C = 3590.239990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.100 0.900 4 C -0.145 4.145 5 C 0.499 3.501 6 O -0.597 6.597 7 N -0.500 5.500 8 N -0.456 5.456 9 C 0.065 3.935 10 C -0.101 4.101 11 C -0.217 4.217 12 C -0.119 4.119 13 C -0.173 4.173 14 C 0.069 3.931 15 C -0.470 4.470 16 H 0.067 0.933 17 C 0.040 3.960 18 N -0.822 5.822 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.263 1.263 23 H 0.048 0.952 24 H 0.100 0.900 25 H 0.038 0.962 26 H 0.137 0.863 27 H 0.124 0.876 28 H 0.410 0.590 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 7.155 -5.928 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 H 0.118 0.882 4 C -0.185 4.185 5 C 0.285 3.715 6 O -0.479 6.479 7 N -0.236 5.236 8 N -0.272 5.272 9 C -0.029 4.029 10 C -0.123 4.123 11 C -0.236 4.236 12 C -0.138 4.138 13 C -0.194 4.194 14 C 0.065 3.935 15 C -0.500 4.500 16 H 0.085 0.915 17 C -0.175 4.175 18 N -0.448 5.448 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.187 1.187 23 H 0.067 0.933 24 H 0.119 0.881 25 H 0.057 0.943 26 H 0.154 0.846 27 H 0.142 0.858 28 H 0.251 0.749 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.023 6.654 -6.110 9.258 hybrid contribution -0.164 -1.550 0.734 1.723 sum -2.187 5.104 -5.376 7.729 Atomic orbital electron populations 1.22175 0.94416 1.01660 1.02938 1.21663 0.94560 0.95764 0.82165 0.88228 1.22584 1.01783 0.95725 0.98398 1.20699 0.81833 0.87493 0.81495 1.90711 1.49937 1.42256 1.64974 1.45257 1.47464 1.24065 1.06776 1.44960 1.57723 1.22259 1.02300 1.17119 1.07389 0.95959 0.82473 1.20830 0.99994 0.96055 0.95410 1.20611 1.09842 0.99837 0.93359 1.20723 1.00354 0.93874 0.98869 1.20956 1.05761 0.96004 0.96641 1.18101 0.89013 0.93849 0.92583 1.19448 1.42035 0.92777 0.95743 0.91478 1.26519 0.93583 1.03132 0.94296 1.69881 1.33097 1.33646 1.08187 0.85436 0.78990 0.77732 0.79287 1.19198 1.19749 1.18750 0.93316 0.88122 0.94303 0.84550 0.85845 0.74893 0.86102 0.85869 0.87408 0.88354 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.15 71.98 0.66 -3.42 16 2 C 0.16 4.51 3.89 45.24 0.18 4.68 16 3 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.15 -3.73 6.62 30.33 0.20 -3.53 16 5 C 0.50 18.55 8.63 87.93 0.76 19.31 16 6 O -0.60 -26.20 18.03 -3.03 -0.05 -26.25 16 7 N -0.50 -20.02 5.73 -173.94 -1.00 -21.02 16 8 N -0.46 -17.34 3.10 -315.17 -0.98 -18.32 16 9 C 0.06 2.79 5.79 38.99 0.23 3.02 16 10 C -0.10 -3.90 9.79 22.37 0.22 -3.68 16 11 C -0.22 -8.33 10.03 22.41 0.22 -8.10 16 12 C -0.12 -5.09 9.96 22.01 0.22 -4.87 16 13 C -0.17 -8.55 8.63 22.46 0.19 -8.36 16 14 C 0.07 3.45 5.58 -21.17 -0.12 3.33 16 15 C -0.47 -23.94 7.96 23.37 0.19 -23.76 16 16 H 0.07 3.48 7.27 -2.91 -0.02 3.46 16 17 C 0.04 1.96 5.16 85.24 0.44 2.40 16 18 N -0.82 -41.82 10.96 21.83 0.24 -41.59 16 19 Si 0.96 39.19 29.59 68.60 2.03 41.22 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 23 H 0.05 1.47 8.01 -2.39 -0.02 1.45 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 27 H 0.12 2.75 7.71 -2.38 -0.02 2.73 16 28 H 0.41 17.85 8.77 -213.81 -1.88 15.97 16 29 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.10 5.18 6.20 -2.91 -0.02 5.16 16 33 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 Total: -1.00 -60.79 282.91 2.88 -57.91 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.75 Total: 31.01 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.38 Total: -22.97 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.74 Total: -80.93 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -60.79 2.88 -57.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.942 kcal (2) G-P(sol) polarization free energy of solvation -60.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds