Wall clock time and date at job start Mon Mar 30 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.48904 * 2 1 4 4 C 1.53988 * 110.32149 * 122.54315 * 2 1 3 5 5 C 1.51190 * 104.31120 * 119.06613 * 4 2 1 6 6 O 1.21284 * 125.58480 * 179.75200 * 5 4 2 7 7 N 1.34051 * 108.82074 * 359.75662 * 5 4 2 8 8 N 1.39335 * 113.07811 * 359.97438 * 7 5 4 9 9 C 1.38731 * 125.33727 * 180.02562 * 8 7 5 10 10 C 1.38748 * 120.29361 * 94.62326 * 9 8 7 11 11 C 1.38169 * 120.02554 * 179.72764 * 10 9 8 12 12 C 1.38901 * 120.62656 * 0.25324 * 11 10 9 13 13 C 1.36447 * 120.59474 * 359.97438 * 12 11 10 14 14 C 1.40728 * 119.95151 * 0.02562 * 13 12 11 15 15 C 1.41050 * 120.30448 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00079 * 206.19187 * 15 14 13 17 17 C 1.39924 * 120.00249 * 26.18607 * 15 14 13 18 18 N 1.30876 * 120.00166 * 15.88210 * 17 15 14 19 19 Si 1.86798 * 120.00214 * 195.88427 * 17 15 14 20 20 H 1.48504 * 109.47164 * 94.54433 * 19 17 15 21 21 H 1.48502 * 109.47353 * 214.54451 * 19 17 15 22 22 H 1.48499 * 109.47380 * 334.54722 * 19 17 15 23 23 H 1.08998 * 109.47429 * 180.21379 * 1 2 3 24 24 H 1.09005 * 109.47126 * 300.21737 * 1 2 3 25 25 H 1.09005 * 109.47066 * 60.21727 * 1 2 3 26 26 H 1.09001 * 110.67502 * 0.25644 * 4 2 1 27 27 H 1.09000 * 110.36318 * 237.72489 * 4 2 1 28 28 H 0.97007 * 123.45758 * 179.97438 * 7 5 4 29 29 H 1.08006 * 119.99047 * 359.97438 * 10 9 8 30 30 H 1.07997 * 119.68368 * 180.23194 * 11 10 9 31 31 H 1.07992 * 119.70223 * 179.97438 * 12 11 10 32 32 H 1.08000 * 120.02147 * 179.97438 * 13 12 11 33 33 H 0.96996 * 120.00375 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0648 -0.7768 1.2173 5 6 2.8620 -1.9118 0.6156 6 8 3.4584 -2.7638 1.2395 7 7 2.8015 -1.8220 -0.7206 8 7 2.0426 -0.7398 -1.1614 9 6 1.8123 -0.4089 -2.4889 10 6 0.6656 -0.8524 -3.1319 11 6 0.4390 -0.5149 -4.4525 12 6 1.3532 0.2635 -5.1507 13 6 2.4915 0.7095 -4.5447 14 6 2.7470 0.3804 -3.2005 15 6 3.9216 0.8370 -2.5669 16 1 4.3374 0.2844 -1.7374 17 6 4.5482 2.0058 -3.0132 18 7 3.9036 2.8379 -3.7909 19 14 6.3049 2.3785 -2.4990 20 1 7.2407 1.8894 -3.5432 21 1 6.4715 3.8447 -2.3324 22 1 6.5993 1.6975 -1.2125 23 1 -0.3634 -1.0276 0.0038 24 1 -0.3633 0.5172 0.8881 25 1 -0.3633 0.5105 -0.8920 26 1 1.2421 -1.1653 1.8176 27 1 2.7082 -0.1379 1.8222 28 1 3.2410 -2.4463 -1.3190 29 1 -0.0522 -1.4583 -2.5989 30 1 -0.4572 -0.8600 -4.9465 31 1 1.1614 0.5181 -6.1825 32 1 3.1962 1.3139 -5.0966 33 1 4.3378 3.6483 -4.0999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:42 Heat of formation + Delta-G solvation = 29.339321 kcal Electronic energy + Delta-G solvation = -17918.245452 eV Core-core repulsion = 15138.004738 eV Total energy + Delta-G solvation = -2780.240715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88364 -37.73387 -36.17655 -33.81297 -32.41434 -31.14957 -29.69039 -27.57904 -26.73419 -25.10578 -21.46287 -21.09441 -20.49834 -19.96596 -17.58043 -17.05305 -15.74877 -15.36536 -15.11255 -14.43298 -14.25011 -13.71771 -13.69558 -13.30851 -12.78238 -12.47897 -12.29176 -11.95791 -11.73257 -11.37128 -11.28474 -11.10947 -11.00050 -10.91358 -10.54998 -10.12304 -9.79891 -9.57855 -9.38713 -9.33329 -7.58457 -7.53776 -6.93154 -6.47182 -4.51328 2.50388 2.74188 2.99839 3.04467 3.09903 3.13047 3.18403 3.82433 4.48210 4.73885 5.03595 5.16451 5.37090 5.57446 5.78831 5.91982 5.98754 6.11609 6.20222 6.30695 6.47689 6.51043 6.62591 6.92777 6.96978 7.08517 7.20241 7.36694 7.64270 7.83182 7.96193 8.13699 8.29877 8.39234 8.55769 8.71798 8.79886 9.39099 10.01058 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.010681 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.325508 B = 2620.904605 C = 3700.441823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 H 0.077 0.923 4 C -0.161 4.161 5 C 0.509 3.491 6 O -0.565 6.565 7 N -0.501 5.501 8 N -0.457 5.457 9 C 0.036 3.964 10 C -0.072 4.072 11 C -0.244 4.244 12 C -0.097 4.097 13 C -0.156 4.156 14 C 0.116 3.884 15 C -0.438 4.438 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.261 1.261 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.412 0.588 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 -0.641 2.998 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.095 0.905 4 C -0.201 4.201 5 C 0.293 3.707 6 O -0.444 6.444 7 N -0.238 5.238 8 N -0.275 5.275 9 C -0.057 4.057 10 C -0.093 4.093 11 C -0.264 4.264 12 C -0.116 4.116 13 C -0.176 4.176 14 C 0.111 3.889 15 C -0.467 4.467 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.185 1.185 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.254 0.746 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.200 -0.770 3.252 4.627 hybrid contribution 0.960 0.130 -0.253 1.001 sum -2.240 -0.640 2.999 3.798 Atomic orbital electron populations 1.22236 0.95602 1.01778 1.02063 1.21172 0.93432 0.95451 0.82959 0.90483 1.22511 1.01244 0.97474 0.98859 1.19990 0.82049 0.86713 0.81966 1.90729 1.48164 1.40902 1.64630 1.45267 1.48269 1.23924 1.06345 1.44496 1.57724 1.23476 1.01842 1.16800 0.96781 1.10755 0.81362 1.20992 0.96515 0.97748 0.94013 1.20255 1.01629 1.09307 0.95238 1.20509 0.95283 0.97856 0.97926 1.21049 0.98146 1.03616 0.94795 1.18057 0.91279 0.88551 0.90987 1.19514 1.06767 1.06365 1.14021 0.90125 1.25972 0.99476 0.95516 0.93423 1.69829 1.36836 1.08514 1.25866 0.86302 0.82068 0.78217 0.80284 1.19256 1.20124 1.18495 0.92814 0.92199 0.91555 0.88025 0.88038 0.74568 0.89133 0.89261 0.89293 0.86288 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.88 37.16 0.33 -1.96 16 2 C 0.17 2.95 4.04 -67.18 -0.27 2.68 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.16 -2.45 6.60 -27.13 -0.18 -2.63 16 5 C 0.51 9.61 8.63 -11.07 -0.10 9.51 16 6 O -0.56 -12.22 18.03 5.55 0.10 -12.12 16 7 N -0.50 -9.60 6.76 31.22 0.21 -9.39 16 8 N -0.46 -9.04 2.83 -50.97 -0.14 -9.19 16 9 C 0.04 0.79 5.79 -83.29 -0.48 0.31 16 10 C -0.07 -1.49 9.35 -39.42 -0.37 -1.85 16 11 C -0.24 -5.03 10.04 -39.36 -0.39 -5.43 16 12 C -0.10 -2.10 9.97 -39.98 -0.40 -2.50 16 13 C -0.16 -3.74 8.62 -39.29 -0.34 -4.08 16 14 C 0.12 2.84 5.57 -106.63 -0.59 2.24 16 15 C -0.44 -10.79 8.67 -37.89 -0.33 -11.12 16 16 H 0.08 2.02 7.62 -52.49 -0.40 1.62 16 17 C 0.08 1.77 5.17 -17.33 -0.09 1.68 16 18 N -0.79 -18.95 10.95 55.55 0.61 -18.34 16 19 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 26 H 0.10 1.32 7.72 -51.93 -0.40 0.92 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.41 7.64 8.96 -183.17 -1.64 6.00 16 29 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.96 6.21 -52.49 -0.33 2.63 16 33 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -27.10 284.08 -8.45 -35.55 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.26 Total: 9.27 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.21 Total: -13.15 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.68 Total: -36.92 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.10 Total: -12.12 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.10 -8.45 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.885 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds