Wall clock time and date at job start Mon Mar 30 2020 04:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.48904 * 2 1 4 4 C 1.53988 * 110.32149 * 122.54315 * 2 1 3 5 5 C 1.51190 * 104.31120 * 119.06613 * 4 2 1 6 6 O 1.21284 * 125.58480 * 179.75200 * 5 4 2 7 7 N 1.34051 * 108.82074 * 359.75662 * 5 4 2 8 8 N 1.39335 * 113.07811 * 359.97438 * 7 5 4 9 9 C 1.38731 * 125.33727 * 180.02562 * 8 7 5 10 10 C 1.38748 * 120.29361 * 94.62326 * 9 8 7 11 11 C 1.38169 * 120.02554 * 179.72764 * 10 9 8 12 12 C 1.38901 * 120.62656 * 0.25324 * 11 10 9 13 13 C 1.36447 * 120.59474 * 359.97438 * 12 11 10 14 14 C 1.40728 * 119.95151 * 0.02562 * 13 12 11 15 15 C 1.41050 * 120.30448 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00079 * 206.19187 * 15 14 13 17 17 C 1.39924 * 120.00249 * 26.18607 * 15 14 13 18 18 N 1.30876 * 120.00166 * 15.88210 * 17 15 14 19 19 Si 1.86798 * 120.00214 * 195.88427 * 17 15 14 20 20 H 1.48504 * 109.47164 * 94.54433 * 19 17 15 21 21 H 1.48502 * 109.47353 * 214.54451 * 19 17 15 22 22 H 1.48499 * 109.47380 * 334.54722 * 19 17 15 23 23 H 1.08998 * 109.47429 * 180.21379 * 1 2 3 24 24 H 1.09005 * 109.47126 * 300.21737 * 1 2 3 25 25 H 1.09005 * 109.47066 * 60.21727 * 1 2 3 26 26 H 1.09001 * 110.67502 * 0.25644 * 4 2 1 27 27 H 1.09000 * 110.36318 * 237.72489 * 4 2 1 28 28 H 0.97007 * 123.45758 * 179.97438 * 7 5 4 29 29 H 1.08006 * 119.99047 * 359.97438 * 10 9 8 30 30 H 1.07997 * 119.68368 * 180.23194 * 11 10 9 31 31 H 1.07992 * 119.70223 * 179.97438 * 12 11 10 32 32 H 1.08000 * 120.02147 * 179.97438 * 13 12 11 33 33 H 0.96996 * 120.00375 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0648 -0.7768 1.2173 5 6 2.8620 -1.9118 0.6156 6 8 3.4584 -2.7638 1.2395 7 7 2.8015 -1.8220 -0.7206 8 7 2.0426 -0.7398 -1.1614 9 6 1.8123 -0.4089 -2.4889 10 6 0.6656 -0.8524 -3.1319 11 6 0.4390 -0.5149 -4.4525 12 6 1.3532 0.2635 -5.1507 13 6 2.4915 0.7095 -4.5447 14 6 2.7470 0.3804 -3.2005 15 6 3.9216 0.8370 -2.5669 16 1 4.3374 0.2844 -1.7374 17 6 4.5482 2.0058 -3.0132 18 7 3.9036 2.8379 -3.7909 19 14 6.3049 2.3785 -2.4990 20 1 7.2407 1.8894 -3.5432 21 1 6.4715 3.8447 -2.3324 22 1 6.5993 1.6975 -1.2125 23 1 -0.3634 -1.0276 0.0038 24 1 -0.3633 0.5172 0.8881 25 1 -0.3633 0.5105 -0.8920 26 1 1.2421 -1.1653 1.8176 27 1 2.7082 -0.1379 1.8222 28 1 3.2410 -2.4463 -1.3190 29 1 -0.0522 -1.4583 -2.5989 30 1 -0.4572 -0.8600 -4.9465 31 1 1.1614 0.5181 -6.1825 32 1 3.1962 1.3139 -5.0966 33 1 4.3378 3.6483 -4.0999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:41 Heat of formation + Delta-G solvation = 14.247995 kcal Electronic energy + Delta-G solvation = -17918.899861 eV Core-core repulsion = 15138.004738 eV Total energy + Delta-G solvation = -2780.895124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37804 -39.41670 -37.75061 -35.56765 -33.78302 -32.77925 -31.43541 -29.08010 -28.13225 -26.83680 -22.96834 -22.83073 -21.98181 -21.46826 -19.29894 -18.71750 -17.32076 -16.88255 -16.72502 -16.01591 -15.75812 -15.38145 -15.22224 -14.75760 -14.42986 -14.10258 -13.56624 -13.47054 -13.27851 -12.88186 -12.87097 -12.62391 -12.53272 -12.27710 -12.17670 -11.63312 -11.51583 -11.23294 -11.08444 -10.91285 -9.31360 -9.28738 -8.67649 -8.02483 -6.33932 0.80786 1.05139 1.35206 1.45462 1.49298 1.59717 1.66619 2.16212 2.72832 3.36684 3.55390 3.76711 3.99524 4.15419 4.49932 4.54632 4.63448 4.75333 4.80039 4.88973 5.02285 5.14396 5.23001 5.30127 5.40227 5.47180 5.49997 5.67649 5.92068 6.09730 6.19961 6.38510 6.57710 6.85574 6.88580 6.93993 7.11983 7.79380 8.28328 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.010681 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.325508 B = 2620.904605 C = 3700.441823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.166 3.834 3 H 0.061 0.939 4 C -0.146 4.146 5 C 0.504 3.496 6 O -0.595 6.595 7 N -0.504 5.504 8 N -0.464 5.464 9 C 0.038 3.962 10 C -0.073 4.073 11 C -0.237 4.237 12 C -0.100 4.100 13 C -0.182 4.182 14 C 0.088 3.912 15 C -0.465 4.465 16 H 0.066 0.934 17 C 0.041 3.959 18 N -0.814 5.814 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.269 1.269 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.048 0.952 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.410 0.590 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -0.814 3.777 6.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 H 0.078 0.922 4 C -0.186 4.186 5 C 0.290 3.710 6 O -0.477 6.477 7 N -0.240 5.240 8 N -0.283 5.283 9 C -0.055 4.055 10 C -0.094 4.094 11 C -0.257 4.257 12 C -0.118 4.118 13 C -0.202 4.202 14 C 0.083 3.917 15 C -0.495 4.495 16 H 0.084 0.916 17 C -0.175 4.175 18 N -0.440 5.440 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.190 1.190 22 H -0.193 1.193 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.152 0.848 27 H 0.136 0.864 28 H 0.251 0.749 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.469 -0.930 4.025 6.086 hybrid contribution 1.249 0.118 -0.532 1.363 sum -3.220 -0.812 3.493 4.819 Atomic orbital electron populations 1.22149 0.93254 1.02381 1.02830 1.21386 0.95191 0.94526 0.82584 0.92155 1.22546 1.01871 0.95852 0.98343 1.20519 0.81758 0.87065 0.81695 1.90710 1.49555 1.42367 1.65079 1.45323 1.48275 1.23649 1.06750 1.44647 1.57711 1.23985 1.01946 1.16947 0.96607 1.09634 0.82311 1.21226 0.96354 0.97575 0.94264 1.20640 1.02042 1.07786 0.95186 1.20781 0.94570 0.97402 0.99088 1.21019 0.99179 1.04944 0.95030 1.18387 0.92088 0.89662 0.91557 1.19507 1.08039 1.07336 1.14598 0.91555 1.26574 1.02457 0.95031 0.93406 1.69863 1.38127 1.09041 1.26968 0.85389 0.77885 0.78329 0.79334 1.18973 1.18977 1.19328 0.92201 0.88877 0.93324 0.84783 0.86424 0.74852 0.86970 0.86180 0.87105 0.88112 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 8.88 71.98 0.64 -3.21 16 2 C 0.17 5.36 4.04 45.24 0.18 5.55 16 3 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.15 -4.11 6.60 30.34 0.20 -3.91 16 5 C 0.50 18.46 8.63 87.93 0.76 19.22 16 6 O -0.60 -25.33 18.03 -3.04 -0.05 -25.38 16 7 N -0.50 -19.11 6.76 -173.94 -1.18 -20.29 16 8 N -0.46 -18.04 2.83 -315.17 -0.89 -18.93 16 9 C 0.04 1.67 5.79 38.99 0.23 1.89 16 10 C -0.07 -2.90 9.35 22.38 0.21 -2.69 16 11 C -0.24 -9.20 10.04 22.41 0.22 -8.97 16 12 C -0.10 -4.22 9.97 22.01 0.22 -4.00 16 13 C -0.18 -8.85 8.62 22.46 0.19 -8.66 16 14 C 0.09 4.37 5.57 -21.17 -0.12 4.25 16 15 C -0.47 -23.63 8.67 23.37 0.20 -23.43 16 16 H 0.07 3.44 7.62 -2.91 -0.02 3.42 16 17 C 0.04 1.99 5.17 85.24 0.44 2.43 16 18 N -0.81 -40.22 10.95 21.83 0.24 -39.98 16 19 Si 0.97 37.85 29.59 68.60 2.03 39.88 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.05 1.45 7.73 -2.38 -0.02 1.43 16 26 H 0.13 2.93 7.72 -2.39 -0.02 2.91 16 27 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.41 15.34 8.96 -213.80 -1.92 13.42 16 29 H 0.11 3.94 8.06 -2.91 -0.02 3.91 16 30 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.10 5.20 6.21 -2.91 -0.02 5.18 16 33 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 Total: -1.00 -58.72 284.08 2.74 -55.98 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.79 Total: 30.23 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.38 Total: -21.53 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.83 Total: -79.20 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -58.72 2.74 -55.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.231 kcal (2) G-P(sol) polarization free energy of solvation -58.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds