Wall clock time and date at job start Mon Mar 30 2020 04:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.39080 * 2 1 4 4 C 1.53983 * 110.43720 * 237.58304 * 2 1 3 5 5 C 1.51183 * 104.31211 * 241.25811 * 4 2 1 6 6 O 1.21293 * 125.58822 * 180.02562 * 5 4 2 7 7 N 1.34061 * 108.82487 * 359.97438 * 5 4 2 8 8 C 1.37093 * 123.46054 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99922 * 139.04790 * 8 7 5 10 10 C 1.38953 * 120.00335 * 319.03955 * 8 7 5 11 11 N 1.31408 * 119.99974 * 345.24337 * 10 8 7 12 12 Si 1.86799 * 119.99957 * 165.23459 * 10 8 7 13 13 H 1.48504 * 109.46735 * 90.00361 * 12 10 8 14 14 H 1.48493 * 109.47322 * 210.00257 * 12 10 8 15 15 H 1.48497 * 109.47188 * 330.00760 * 12 10 8 16 16 N 1.39335 * 113.07168 * 0.02562 * 7 5 4 17 17 C 1.39672 * 125.33662 * 180.02562 * 16 7 5 18 18 C 1.38906 * 120.07767 * 132.73723 * 17 16 7 19 19 C 1.38106 * 119.92668 * 179.79627 * 18 17 16 20 20 C 1.38289 * 120.07115 * 0.45497 * 19 18 17 21 21 C 1.38284 * 120.14931 * 359.79808 * 20 19 18 22 22 C 1.38100 * 120.07621 * 359.97417 * 21 20 19 23 23 H 1.08995 * 109.47252 * 180.95667 * 1 2 3 24 24 H 1.09008 * 109.46409 * 60.95995 * 1 2 3 25 25 H 1.08994 * 109.47042 * 300.96026 * 1 2 3 26 26 H 1.08996 * 110.46544 * 359.96766 * 4 2 1 27 27 H 1.09004 * 110.46079 * 122.54705 * 4 2 1 28 28 H 0.96999 * 119.99953 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.04134 * 0.02562 * 18 17 16 30 30 H 1.07993 * 119.96528 * 180.23417 * 19 18 17 31 31 H 1.08002 * 119.92300 * 179.77196 * 20 19 18 32 32 H 1.08003 * 119.95899 * 179.97438 * 21 20 19 33 33 H 1.08007 * 120.03747 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0677 -0.7735 -1.2181 5 6 2.8583 -1.9137 -0.6175 6 8 3.4516 -2.7673 -1.2423 7 7 2.7970 -1.8259 0.7188 8 6 3.4117 -2.7135 1.5636 9 1 3.9097 -2.3562 2.4530 10 6 3.3940 -4.0728 1.2759 11 7 2.5611 -4.5428 0.3748 12 14 4.5544 -5.2319 2.1699 13 1 3.8972 -5.7372 3.4020 14 1 4.8916 -6.3752 1.2843 15 1 5.7969 -4.5048 2.5343 16 7 2.0433 -0.7405 1.1607 17 6 1.8127 -0.4078 2.4975 18 6 1.9775 0.9028 2.9272 19 6 1.7445 1.2290 4.2488 20 6 1.3566 0.2507 5.1460 21 6 1.1967 -1.0560 4.7227 22 6 1.4235 -1.3881 3.4016 23 1 -0.3633 -1.0275 0.0172 24 1 -0.3632 0.4989 -0.8986 25 1 -0.3633 0.5286 0.8812 26 1 1.2439 -1.1566 -1.8202 27 1 2.7156 -0.1353 -1.8190 28 1 2.5490 -5.4917 0.1737 29 1 2.2839 1.6666 2.2279 30 1 1.8688 2.2484 4.5828 31 1 1.1787 0.5078 6.1798 32 1 0.8941 -1.8176 5.4261 33 1 1.2988 -2.4090 3.0717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:46 Heat of formation + Delta-G solvation = 51.420832 kcal Electronic energy + Delta-G solvation = -18183.430102 eV Core-core repulsion = 15404.146913 eV Total energy + Delta-G solvation = -2779.283188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64887 -38.04944 -35.52086 -33.64932 -31.68988 -31.10173 -30.23830 -27.51375 -27.14117 -24.29905 -22.28508 -21.72860 -20.14558 -19.76408 -17.68824 -16.10746 -15.67652 -15.36905 -14.60863 -14.57829 -13.99975 -13.79656 -13.43287 -13.06572 -12.80048 -12.50446 -12.34250 -12.11642 -11.80400 -11.52345 -11.32147 -11.04805 -10.92533 -10.81281 -10.56163 -10.50878 -10.32372 -9.55298 -8.77554 -8.36227 -8.34425 -7.84773 -6.44476 -6.04509 -4.04032 1.96122 2.02349 3.11462 3.19716 3.28796 3.41094 4.16739 4.28959 4.39031 5.05749 5.18097 5.37047 5.45121 5.49563 5.51965 5.59081 5.67749 5.89863 5.94385 6.03224 6.10444 6.21916 6.29206 6.35279 6.56567 6.62913 6.78885 6.95791 7.12626 7.25801 7.43741 7.44750 7.99056 8.24384 8.86448 9.27998 9.54090 10.30476 10.74203 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.011235 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.077977 B = 2491.706266 C = 3625.001036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.068 0.932 4 C -0.161 4.161 5 C 0.490 3.510 6 O -0.531 6.531 7 N -0.252 5.252 8 C -0.323 4.323 9 H 0.086 0.914 10 C 0.059 3.941 11 N -0.818 5.818 12 Si 0.928 3.072 13 H -0.277 1.277 14 H -0.280 1.280 15 H -0.267 1.267 16 N -0.484 5.484 17 C 0.235 3.765 18 C -0.170 4.170 19 C -0.100 4.100 20 C -0.170 4.170 21 C -0.099 4.099 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 9.150 4.379 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.052 3.948 3 H 0.086 0.914 4 C -0.202 4.202 5 C 0.275 3.725 6 O -0.408 6.408 7 N -0.056 5.056 8 C -0.454 4.454 9 H 0.103 0.897 10 C -0.155 4.155 11 N -0.450 5.450 12 Si 0.753 3.247 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.191 1.191 16 N -0.287 5.287 17 C 0.136 3.864 18 C -0.193 4.193 19 C -0.119 4.119 20 C -0.190 4.190 21 C -0.118 4.118 22 C -0.161 4.161 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.028 8.491 3.865 10.162 hybrid contribution 0.239 -0.611 0.481 0.814 sum -3.789 7.879 4.346 9.764 Atomic orbital electron populations 1.22229 0.95438 1.02656 1.01443 1.21294 0.93514 0.94861 0.85082 0.91392 1.22476 1.01483 0.98776 0.97497 1.18978 0.85534 0.86872 0.81165 1.90580 1.47978 1.39190 1.63045 1.43322 1.38331 1.19380 1.04544 1.19236 1.29692 0.85974 1.10457 0.89651 1.25517 0.96147 0.97487 0.96338 1.69890 1.31729 1.14702 1.28645 0.85942 0.80545 0.79565 0.78612 1.20250 1.20525 1.19147 1.47072 1.55599 1.25155 1.00861 1.17152 0.94195 0.92483 0.82590 1.20873 1.06182 0.96256 0.95984 1.20731 0.99814 0.98547 0.92824 1.20826 1.05732 0.93489 0.98949 1.20928 0.99582 0.95987 0.95340 1.21355 1.00587 1.00691 0.93452 0.91977 0.91880 0.92538 0.89024 0.89197 0.91906 0.86889 0.86938 0.87226 0.86862 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.12 37.16 0.34 -2.13 16 2 C 0.16 2.81 3.78 -67.18 -0.25 2.56 16 3 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 4 C -0.16 -3.17 6.61 -27.13 -0.18 -3.35 16 5 C 0.49 12.96 7.39 -11.07 -0.08 12.88 16 6 O -0.53 -16.09 15.64 5.55 0.09 -16.00 16 7 N -0.25 -6.61 3.49 -10.96 -0.04 -6.64 16 8 C -0.32 -8.93 7.67 -14.93 -0.11 -9.04 16 9 H 0.09 2.33 7.81 -52.48 -0.41 1.92 16 10 C 0.06 1.63 4.83 -17.47 -0.08 1.55 16 11 N -0.82 -23.91 11.48 55.50 0.64 -23.27 16 12 Si 0.93 21.42 29.58 -169.99 -5.03 16.39 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 16 N -0.48 -10.61 3.69 -51.39 -0.19 -10.80 16 17 C 0.23 4.74 5.55 -83.79 -0.47 4.28 16 18 C -0.17 -2.91 9.67 -39.38 -0.38 -3.29 16 19 C -0.10 -1.50 10.04 -39.61 -0.40 -1.90 16 20 C -0.17 -2.56 10.04 -39.55 -0.40 -2.95 16 21 C -0.10 -1.68 10.04 -39.62 -0.40 -2.08 16 22 C -0.14 -2.81 8.85 -39.38 -0.35 -3.16 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 26 H 0.09 1.69 7.72 -51.93 -0.40 1.29 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.11 1.76 7.86 -52.49 -0.41 1.35 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.13 2.99 7.30 -52.48 -0.38 2.61 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -32.38 282.42 -7.15 -39.53 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.11 Total: 3.18 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.76 Total: -6.64 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.41 Total: -40.72 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.38 -7.15 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.951 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds