Wall clock time and date at job start Mon Mar 30 2020 04:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.39080 * 2 1 4 4 C 1.53983 * 110.43720 * 237.58304 * 2 1 3 5 5 C 1.51183 * 104.31211 * 241.25811 * 4 2 1 6 6 O 1.21293 * 125.58822 * 180.02562 * 5 4 2 7 7 N 1.34061 * 108.82487 * 359.97438 * 5 4 2 8 8 C 1.37093 * 123.46054 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99922 * 139.04790 * 8 7 5 10 10 C 1.38953 * 120.00335 * 319.03955 * 8 7 5 11 11 N 1.31408 * 119.99974 * 345.24337 * 10 8 7 12 12 Si 1.86799 * 119.99957 * 165.23459 * 10 8 7 13 13 H 1.48504 * 109.46735 * 90.00361 * 12 10 8 14 14 H 1.48493 * 109.47322 * 210.00257 * 12 10 8 15 15 H 1.48497 * 109.47188 * 330.00760 * 12 10 8 16 16 N 1.39335 * 113.07168 * 0.02562 * 7 5 4 17 17 C 1.39672 * 125.33662 * 180.02562 * 16 7 5 18 18 C 1.38906 * 120.07767 * 132.73723 * 17 16 7 19 19 C 1.38106 * 119.92668 * 179.79627 * 18 17 16 20 20 C 1.38289 * 120.07115 * 0.45497 * 19 18 17 21 21 C 1.38284 * 120.14931 * 359.79808 * 20 19 18 22 22 C 1.38100 * 120.07621 * 359.97417 * 21 20 19 23 23 H 1.08995 * 109.47252 * 180.95667 * 1 2 3 24 24 H 1.09008 * 109.46409 * 60.95995 * 1 2 3 25 25 H 1.08994 * 109.47042 * 300.96026 * 1 2 3 26 26 H 1.08996 * 110.46544 * 359.96766 * 4 2 1 27 27 H 1.09004 * 110.46079 * 122.54705 * 4 2 1 28 28 H 0.96999 * 119.99953 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.04134 * 0.02562 * 18 17 16 30 30 H 1.07993 * 119.96528 * 180.23417 * 19 18 17 31 31 H 1.08002 * 119.92300 * 179.77196 * 20 19 18 32 32 H 1.08003 * 119.95899 * 179.97438 * 21 20 19 33 33 H 1.08007 * 120.03747 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0677 -0.7735 -1.2181 5 6 2.8583 -1.9137 -0.6175 6 8 3.4516 -2.7673 -1.2423 7 7 2.7970 -1.8259 0.7188 8 6 3.4117 -2.7135 1.5636 9 1 3.9097 -2.3562 2.4530 10 6 3.3940 -4.0728 1.2759 11 7 2.5611 -4.5428 0.3748 12 14 4.5544 -5.2319 2.1699 13 1 3.8972 -5.7372 3.4020 14 1 4.8916 -6.3752 1.2843 15 1 5.7969 -4.5048 2.5343 16 7 2.0433 -0.7405 1.1607 17 6 1.8127 -0.4078 2.4975 18 6 1.9775 0.9028 2.9272 19 6 1.7445 1.2290 4.2488 20 6 1.3566 0.2507 5.1460 21 6 1.1967 -1.0560 4.7227 22 6 1.4235 -1.3881 3.4016 23 1 -0.3633 -1.0275 0.0172 24 1 -0.3632 0.4989 -0.8986 25 1 -0.3633 0.5286 0.8812 26 1 1.2439 -1.1566 -1.8202 27 1 2.7156 -0.1353 -1.8190 28 1 2.5490 -5.4917 0.1737 29 1 2.2839 1.6666 2.2279 30 1 1.8688 2.2484 4.5828 31 1 1.1787 0.5078 6.1798 32 1 0.8941 -1.8176 5.4261 33 1 1.2988 -2.4090 3.0717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:46 Heat of formation + Delta-G solvation = 30.819583 kcal Electronic energy + Delta-G solvation = -18184.323439 eV Core-core repulsion = 15404.146913 eV Total energy + Delta-G solvation = -2780.176526 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34549 -39.54624 -37.36031 -35.54776 -33.37609 -32.79156 -31.58809 -29.09848 -28.75232 -26.16364 -23.67128 -23.15644 -21.90643 -21.40388 -19.39961 -17.93182 -17.29665 -16.86327 -16.44396 -16.22513 -15.67041 -15.27816 -15.00383 -14.75859 -14.20744 -14.12896 -14.01848 -13.54068 -13.31635 -13.24324 -12.98682 -12.84683 -12.48407 -12.26309 -12.15451 -12.12596 -11.86361 -11.35298 -10.60631 -10.26549 -9.70117 -9.59639 -8.46830 -7.83996 -6.14818 0.60444 0.66168 1.29934 1.34654 1.45204 1.67969 2.23755 2.36545 3.00427 3.10838 3.65037 3.80423 3.92131 4.12917 4.25372 4.27029 4.40682 4.46275 4.67940 4.73129 4.75613 4.86393 4.88248 5.04831 5.15973 5.25509 5.32070 5.35160 5.66473 5.78171 5.79598 6.09819 6.13905 6.43583 6.88270 7.36824 7.60500 8.33409 8.69502 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.011235 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.077977 B = 2491.706266 C = 3625.001036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 H 0.105 0.895 4 C -0.149 4.149 5 C 0.457 3.543 6 O -0.589 6.589 7 N -0.264 5.264 8 C -0.343 4.343 9 H 0.078 0.922 10 C 0.009 3.991 11 N -0.862 5.862 12 Si 0.990 3.010 13 H -0.259 1.259 14 H -0.282 1.282 15 H -0.262 1.262 16 N -0.492 5.492 17 C 0.204 3.796 18 C -0.165 4.165 19 C -0.090 4.090 20 C -0.155 4.155 21 C -0.104 4.104 22 C -0.167 4.167 23 H 0.028 0.972 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.267 0.733 29 H 0.133 0.867 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 12.468 6.365 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.123 0.877 4 C -0.189 4.189 5 C 0.243 3.757 6 O -0.471 6.471 7 N -0.067 5.067 8 C -0.472 4.472 9 H 0.095 0.905 10 C -0.199 4.199 11 N -0.495 5.495 12 Si 0.812 3.188 13 H -0.184 1.184 14 H -0.207 1.207 15 H -0.186 1.186 16 N -0.298 5.298 17 C 0.107 3.893 18 C -0.188 4.188 19 C -0.109 4.109 20 C -0.174 4.174 21 C -0.123 4.123 22 C -0.189 4.189 23 H 0.048 0.952 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.564 11.847 5.912 14.005 hybrid contribution 0.344 -1.435 0.025 1.476 sum -4.220 10.412 5.938 12.708 Atomic orbital electron populations 1.22161 0.93573 1.01205 1.03763 1.21664 0.94962 0.95559 0.82604 0.87733 1.22462 1.01274 0.96702 0.98473 1.20119 0.85872 0.88087 0.81578 1.90507 1.50423 1.41826 1.64318 1.43283 1.39054 1.19587 1.04779 1.19285 1.31348 0.86713 1.09866 0.90473 1.26404 0.97454 0.99018 0.97039 1.70012 1.33810 1.14608 1.31090 0.85023 0.78646 0.77275 0.77890 1.18403 1.20731 1.18609 1.46909 1.56210 1.24115 1.02613 1.17491 0.96077 0.94001 0.81739 1.21136 1.05238 0.94863 0.97528 1.21249 0.97461 1.00576 0.91567 1.21302 1.03036 0.92157 1.00905 1.21164 0.99175 0.97882 0.94051 1.21188 1.03262 0.98908 0.95542 0.95237 0.88080 0.91598 0.88041 0.86254 0.92350 0.84905 0.82612 0.83297 0.85238 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.12 71.98 0.66 -3.65 16 2 C 0.15 5.27 3.78 45.24 0.17 5.44 16 3 H 0.11 2.84 7.95 -2.39 -0.02 2.82 16 4 C -0.15 -5.75 6.61 30.33 0.20 -5.55 16 5 C 0.46 25.13 7.39 87.92 0.65 25.78 16 6 O -0.59 -37.72 15.64 -3.07 -0.05 -37.77 16 7 N -0.26 -14.41 3.49 -307.38 -1.07 -15.48 16 8 C -0.34 -19.90 7.67 84.04 0.64 -19.26 16 9 H 0.08 4.44 7.81 -2.91 -0.02 4.42 16 10 C 0.01 0.54 4.83 84.93 0.41 0.96 16 11 N -0.86 -53.59 11.48 21.66 0.25 -53.35 16 12 Si 0.99 45.88 29.58 68.60 2.03 47.90 16 13 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 16 N -0.49 -21.58 3.69 -316.51 -1.17 -22.75 16 17 C 0.20 8.09 5.55 38.21 0.21 8.30 16 18 C -0.17 -5.07 9.67 22.40 0.22 -4.85 16 19 C -0.09 -2.23 10.04 22.25 0.22 -2.00 16 20 C -0.15 -3.93 10.04 22.29 0.22 -3.71 16 21 C -0.10 -3.33 10.04 22.25 0.22 -3.11 16 22 C -0.17 -6.87 8.85 22.40 0.20 -6.68 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 26 H 0.10 3.69 7.72 -2.39 -0.02 3.67 16 27 H 0.12 3.84 8.14 -2.38 -0.02 3.83 16 28 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 29 H 0.13 3.52 7.86 -2.91 -0.02 3.49 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.08 4.19 7.30 -2.91 -0.02 4.16 16 Total: -1.00 -77.48 282.42 5.12 -72.36 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.10 Total: 17.40 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.03 Total: -8.32 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -1.99 Total: -91.58 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.05 Total: -37.77 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.48 5.12 -72.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.176 kcal (2) G-P(sol) polarization free energy of solvation -77.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds