Wall clock time and date at job start Mon Mar 30 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47313 * 270.00019 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99633 * 3 2 1 6 6 H 1.48504 * 109.47704 * 149.99826 * 3 2 1 7 7 C 1.40117 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.41545 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.34091 * 120.72016 * 0.29512 * 9 7 2 11 11 C 1.31380 * 120.45941 * 180.33033 * 10 9 7 12 12 C 1.50706 * 118.93243 * 179.79588 * 11 10 9 13 13 C 1.53002 * 117.49668 * 59.73355 * 12 11 10 14 14 C 1.53000 * 60.02940 * 252.51929 * 13 12 11 15 15 N 1.31988 * 122.13484 * 359.51765 * 11 10 9 16 16 C 1.32736 * 121.28920 * 0.25818 * 15 11 10 17 17 C 1.37758 * 119.04850 * 359.81192 * 16 15 11 18 18 C 1.50403 * 121.69533 * 180.40531 * 17 16 15 19 19 C 1.53074 * 109.63290 * 343.04121 * 18 17 16 20 20 O 1.43194 * 108.54894 * 48.86526 * 19 18 17 21 21 C 1.42787 * 113.31245 * 289.56054 * 20 19 18 22 22 H 0.96992 * 120.00000 * 0.02562 * 1 2 3 23 23 H 1.09000 * 115.55924 * 205.41760 * 12 11 10 24 24 H 1.09002 * 117.49918 * 145.01964 * 13 12 11 25 25 H 1.09002 * 117.49754 * 0.02562 * 13 12 11 26 26 H 1.09008 * 117.49673 * 107.47884 * 14 13 12 27 27 H 1.08999 * 117.49942 * 252.47315 * 14 13 12 28 28 H 1.08994 * 109.44732 * 103.08873 * 18 17 16 29 29 H 1.09000 * 109.43886 * 223.02699 * 18 17 16 30 30 H 1.09005 * 109.62306 * 168.58563 * 19 18 17 31 31 H 1.09007 * 109.62553 * 288.95801 * 19 18 17 32 32 H 1.09001 * 109.35622 * 291.52755 * 21 20 19 33 33 H 1.08994 * 109.36292 * 171.93776 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7001 7 6 2.0073 -1.2135 0.0005 8 1 3.0873 -1.2134 0.0010 9 6 1.2996 -2.4393 0.0016 10 7 -0.0412 -2.4561 -0.0038 11 6 -0.6930 -3.5968 0.0038 12 6 -2.1999 -3.5756 0.0021 13 6 -2.8953 -2.8902 -1.1758 14 6 -2.8878 -2.2227 0.2009 15 7 -0.0708 -4.7609 0.0075 16 6 1.2545 -4.8342 0.0087 17 6 1.9889 -3.6687 0.0022 18 6 3.4928 -3.6823 -0.0058 19 6 3.9969 -5.0650 0.4151 20 8 3.2957 -6.0561 -0.3443 21 6 1.9220 -6.1829 0.0241 22 1 -0.4850 0.8400 -0.0004 23 1 -2.6831 -4.4539 0.4300 24 1 -3.8361 -3.3175 -1.5228 25 1 -2.2629 -2.4550 -1.9497 26 1 -2.2501 -1.3485 0.3329 27 1 -3.8237 -2.2106 0.7595 28 1 3.8524 -3.4551 -1.0093 29 1 3.8661 -2.9327 0.6919 30 1 5.0661 -5.1408 0.2171 31 1 3.8100 -5.2147 1.4786 32 1 1.8543 -6.6081 1.0254 33 1 1.4182 -6.8434 -0.6816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:13 Heat of formation + Delta-G solvation = 13.958878 kcal Electronic energy + Delta-G solvation = -17855.911671 eV Core-core repulsion = 15075.004010 eV Total energy + Delta-G solvation = -2780.907661 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.70767 -37.72149 -35.92458 -34.18132 -32.21824 -31.50468 -29.37362 -26.87606 -25.07596 -24.16697 -21.66960 -21.51668 -21.06237 -18.92206 -17.76654 -16.42560 -15.72828 -15.35439 -15.16305 -14.69337 -13.87782 -13.87465 -13.18946 -13.04688 -12.96222 -12.47695 -11.93485 -11.56557 -11.42269 -11.24818 -11.17826 -10.74688 -10.65666 -10.49799 -10.27560 -9.90690 -9.69609 -9.54070 -9.28744 -8.94568 -8.52056 -7.64155 -7.43953 -6.55092 -4.83991 2.51932 2.74305 2.99129 3.01363 3.13345 3.80219 4.34373 4.45045 4.81895 5.00813 5.48111 5.51271 5.63117 5.71157 5.76986 5.79373 5.82707 5.90773 6.00433 6.05270 6.27429 6.39149 6.41829 6.54105 6.62923 6.66874 6.86365 6.94565 7.11513 7.27116 7.32068 7.57705 7.75423 7.96047 8.42268 8.69304 8.98958 10.03894 10.16518 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.011389 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.498136 B = 2457.917911 C = 4120.362701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.090 0.910 9 C 0.276 3.724 10 N -0.508 5.508 11 C 0.338 3.662 12 C -0.082 4.082 13 C -0.164 4.164 14 C -0.160 4.160 15 N -0.614 5.614 16 C 0.128 3.872 17 C -0.282 4.282 18 C -0.076 4.076 19 C 0.060 3.940 20 O -0.383 6.383 21 C 0.122 3.878 22 H 0.276 0.724 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -2.016 0.866 2.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.147 3.853 10 N -0.228 5.228 11 C 0.067 3.933 12 C -0.103 4.103 13 C -0.203 4.203 14 C -0.197 4.197 15 N -0.338 5.338 16 C -0.011 4.011 17 C -0.291 4.291 18 C -0.114 4.114 19 C -0.017 4.017 20 O -0.300 6.300 21 C 0.045 3.955 22 H 0.087 0.913 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.175 -1.989 0.724 2.124 hybrid contribution 1.098 0.879 0.186 1.419 sum 1.273 -1.111 0.910 1.919 Atomic orbital electron populations 1.70027 1.07309 1.28211 1.27000 1.26114 0.94968 1.01260 0.93360 0.86275 0.80490 0.80448 0.79407 1.19252 1.19936 1.18405 1.19672 0.94498 0.88902 1.41835 0.89194 1.18636 0.87968 0.91385 0.87327 1.69083 1.08015 1.25950 1.19729 1.21695 0.94459 0.84993 0.92134 1.20364 0.88707 0.96897 1.04292 1.22795 1.00868 1.04202 0.92419 1.23091 1.00960 0.97771 0.97909 1.67635 1.08822 1.30205 1.27176 1.20964 0.90454 0.94426 0.95235 1.20518 0.95643 0.94959 1.17981 1.20519 0.93237 0.96245 1.01411 1.22652 0.95868 0.88475 0.94708 1.87969 1.21528 1.58242 1.62305 1.20986 0.80883 0.93278 1.00376 0.91268 0.87616 0.89744 0.89020 0.85226 0.90224 0.91837 0.90890 0.89392 0.93460 0.92373 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.45 11.08 55.55 0.62 -16.83 16 2 C 0.07 1.68 5.50 -17.34 -0.10 1.59 16 3 Si 0.91 17.60 29.56 -169.99 -5.02 12.57 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.42 -10.53 8.71 -37.62 -0.33 -10.86 16 8 H 0.09 2.11 6.38 -52.48 -0.33 1.78 16 9 C 0.28 7.39 6.58 -84.59 -0.56 6.84 16 10 N -0.51 -13.69 6.96 -8.68 -0.06 -13.75 16 11 C 0.34 8.55 7.31 -157.38 -1.15 7.40 16 12 C -0.08 -1.74 6.23 -91.73 -0.57 -2.32 16 13 C -0.16 -3.10 10.23 -26.73 -0.27 -3.37 16 14 C -0.16 -3.09 10.01 -26.70 -0.27 -3.36 16 15 N -0.61 -15.35 10.24 -7.21 -0.07 -15.42 16 16 C 0.13 3.05 6.71 -82.48 -0.55 2.49 16 17 C -0.28 -6.89 5.84 -103.92 -0.61 -7.50 16 18 C -0.08 -1.52 5.19 -27.99 -0.15 -1.66 16 19 C 0.06 1.02 6.85 37.20 0.25 1.28 16 20 O -0.38 -7.29 10.79 -35.23 -0.38 -7.67 16 21 C 0.12 2.38 6.94 35.91 0.25 2.63 16 22 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 23 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 26 H 0.13 2.90 7.08 -51.92 -0.37 2.53 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.41 7.09 -51.93 -0.37 1.04 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.77 8.08 -51.92 -0.42 0.35 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 278.11 15.07 4.19 4.19 Total: -1.00 -28.96 278.11 -8.78 -37.75 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.01 Total: 6.01 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -4.04 Total: -6.84 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.48 Total: -46.01 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.38 Total: -7.67 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.96 -8.78 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.706 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds