Wall clock time and date at job start Mon Mar 30 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.37263 * 2 1 4 4 C 1.50676 * 109.37375 * 119.65110 * 2 1 3 5 5 O 1.21289 * 120.26630 * 265.36912 * 4 2 1 6 6 N 1.34823 * 119.38733 * 84.81621 * 4 2 1 7 7 C 1.37089 * 120.54150 * 180.81838 * 6 4 2 8 8 H 1.07996 * 119.99941 * 41.55014 * 7 6 4 9 9 C 1.38873 * 119.99945 * 221.55473 * 7 6 4 10 10 N 1.31438 * 119.99856 * 15.32398 * 9 7 6 11 11 Si 1.86794 * 119.99920 * 195.32441 * 9 7 6 12 12 H 1.48497 * 109.47166 * 89.99693 * 11 9 7 13 13 H 1.48500 * 109.47071 * 210.00111 * 11 9 7 14 14 H 1.48504 * 109.47224 * 329.99702 * 11 9 7 15 15 C 1.39978 * 118.76518 * 1.62473 * 6 4 2 16 16 C 1.38654 * 120.43136 * 197.18048 * 15 6 4 17 17 C 1.38211 * 119.86653 * 179.71746 * 16 15 6 18 18 C 1.38359 * 120.17718 * 359.97328 * 17 16 15 19 19 C 1.38196 * 120.32178 * 0.08895 * 18 17 16 20 20 C 1.38786 * 119.96727 * 0.28184 * 19 18 17 21 21 N 1.39507 * 120.16025 * 179.34783 * 20 19 18 22 22 C 1.46902 * 110.99354 * 269.02995 * 21 20 19 23 23 H 1.08993 * 109.46823 * 179.75927 * 1 2 3 24 24 H 1.08998 * 109.46491 * 299.76433 * 1 2 3 25 25 H 1.08998 * 109.46870 * 59.75723 * 1 2 3 26 26 H 0.96996 * 119.99934 * 180.02562 * 10 9 7 27 27 H 1.08002 * 120.06666 * 359.68358 * 16 15 6 28 28 H 1.08003 * 119.91560 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.83928 * 180.02562 * 18 17 16 30 30 H 1.08000 * 120.01226 * 179.97438 * 19 18 17 31 31 H 1.08999 * 109.47678 * 56.04584 * 22 21 20 32 32 H 1.09006 * 109.46984 * 176.04240 * 22 21 20 33 33 H 1.09000 * 109.47137 * 296.03639 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0299 -0.7032 1.2353 5 8 2.3125 -0.0672 2.2287 6 7 2.1492 -2.0461 1.2295 7 6 2.5857 -2.7115 2.3458 8 1 2.2314 -2.4175 3.3227 9 6 3.4834 -3.7637 2.2204 10 7 4.1439 -3.9336 1.0968 11 14 3.7522 -4.9373 3.6485 12 1 2.7953 -6.0682 3.5466 13 1 5.1418 -5.4592 3.6055 14 1 3.5333 -4.2174 4.9288 15 6 1.8357 -2.7452 0.0580 16 6 1.5992 -4.1109 0.0971 17 6 1.2849 -4.7885 -1.0657 18 6 1.2051 -4.1077 -2.2676 19 6 1.4406 -2.7467 -2.3154 20 6 1.7646 -2.0580 -1.1549 21 7 2.0165 -0.6866 -1.2008 22 6 3.4449 -0.4209 -1.4171 23 1 -0.3633 -1.0276 -0.0043 24 1 -0.3632 0.5102 0.8921 25 1 -0.3633 0.5176 -0.8878 26 1 4.7706 -4.6686 1.0090 27 1 1.6611 -4.6441 1.0343 28 1 1.1001 -5.8522 -1.0361 29 1 0.9586 -4.6425 -3.1728 30 1 1.3774 -2.2203 -3.2563 31 1 3.7748 -0.9245 -2.3257 32 1 3.6034 0.6528 -1.5190 33 1 4.0166 -0.7934 -0.5671 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:31 Heat of formation + Delta-G solvation = -7.486761 kcal Electronic energy + Delta-G solvation = -18713.559156 eV Core-core repulsion = 15931.721543 eV Total energy + Delta-G solvation = -2781.837613 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.33001 -39.27003 -37.80763 -36.58390 -33.88558 -32.44534 -30.85878 -30.09814 -27.63524 -26.29362 -24.55888 -23.57757 -22.81143 -20.17303 -19.49477 -18.64829 -17.57277 -16.83829 -16.58169 -16.09551 -15.91495 -15.64459 -15.09810 -14.81887 -14.63657 -14.20262 -13.90498 -13.58131 -13.34904 -13.16363 -12.96431 -12.80115 -12.73924 -12.40311 -12.29203 -12.08193 -11.96493 -11.38335 -11.14937 -10.70034 -9.85893 -9.20660 -8.76369 -8.28707 -6.35815 0.49777 0.70392 1.28966 1.31915 1.43859 1.85451 2.12732 2.59099 2.80825 2.91839 3.27018 3.56578 3.96827 4.18990 4.19679 4.35194 4.40459 4.52755 4.67272 4.73149 4.80076 4.87386 4.88441 4.96767 5.12230 5.21582 5.31440 5.48660 5.58122 5.77477 5.84096 6.05300 6.07252 6.23571 6.51060 6.89331 7.18034 7.68134 8.52639 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.012325 C = 0.009241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.326390 B = 2271.322080 C = 3029.290129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.071 3.929 3 H 0.123 0.877 4 C 0.426 3.574 5 O -0.603 6.603 6 N -0.396 5.396 7 C -0.378 4.378 8 H 0.069 0.931 9 C 0.021 3.979 10 N -0.865 5.865 11 Si 0.982 3.018 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.145 3.855 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.146 4.146 19 C -0.081 4.081 20 C 0.016 3.984 21 N -0.466 5.466 22 C 0.032 3.968 23 H 0.042 0.958 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.277 0.723 27 H 0.097 0.903 28 H 0.137 0.863 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.096 0.904 33 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -0.669 -9.522 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 H 0.141 0.859 4 C 0.217 3.783 5 O -0.487 6.487 6 N -0.105 5.105 7 C -0.505 4.505 8 H 0.087 0.913 9 C -0.186 4.186 10 N -0.498 5.498 11 Si 0.804 3.196 12 H -0.179 1.179 13 H -0.196 1.196 14 H -0.198 1.198 15 C 0.047 3.953 16 C -0.144 4.144 17 C -0.129 4.129 18 C -0.165 4.165 19 C -0.100 4.100 20 C -0.080 4.080 21 N -0.186 5.186 22 C -0.115 4.115 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -5.191 -0.203 -9.418 10.756 hybrid contribution 1.125 -0.832 2.083 2.509 sum -4.066 -1.035 -7.335 8.450 Atomic orbital electron populations 1.21636 0.90186 1.02256 1.03924 1.22132 0.99356 0.98647 0.83907 0.85918 1.22570 0.81156 0.83168 0.91407 1.90483 1.54175 1.66146 1.37887 1.41510 1.53485 1.04610 1.10895 1.19364 1.27689 1.16801 0.86616 0.91337 1.26154 0.92711 0.99434 1.00272 1.70071 1.22394 1.29871 1.27425 0.85124 0.78400 0.78269 0.77836 1.17939 1.19587 1.19850 1.18780 0.96685 0.93333 0.86529 1.20643 1.01958 0.92722 0.99101 1.21184 0.99529 1.00206 0.91954 1.21168 1.03453 0.93798 0.98131 1.20872 0.98581 0.94190 0.96359 1.18645 1.08142 0.88920 0.92340 1.59578 1.17252 1.07396 1.34383 1.22464 0.85778 1.02912 1.00312 0.93847 0.91669 0.87607 0.91333 0.88453 0.84496 0.82620 0.83058 0.89316 0.88588 0.99121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 9.18 71.98 0.66 -3.37 16 2 C 0.07 2.82 2.73 44.21 0.12 2.94 16 3 H 0.12 4.42 7.97 -2.39 -0.02 4.40 16 4 C 0.43 22.49 6.07 87.64 0.53 23.02 16 5 O -0.60 -36.16 17.10 -3.06 -0.05 -36.21 16 6 N -0.40 -21.74 2.75 -458.47 -1.26 -23.00 16 7 C -0.38 -22.14 8.34 84.02 0.70 -21.44 16 8 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 9 C 0.02 1.13 3.58 84.90 0.30 1.43 16 10 N -0.86 -47.18 11.42 21.65 0.25 -46.93 16 11 Si 0.98 42.36 29.58 68.60 2.03 44.39 16 12 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 C 0.15 6.96 5.06 38.26 0.19 7.16 16 16 C -0.12 -5.55 7.70 22.36 0.17 -5.38 16 17 C -0.11 -3.88 10.04 22.29 0.22 -3.66 16 18 C -0.15 -4.38 10.03 22.29 0.22 -4.16 16 19 C -0.08 -2.61 9.97 22.39 0.22 -2.38 16 20 C 0.02 0.66 4.01 38.38 0.15 0.82 16 21 N -0.47 -17.26 4.62 -700.51 -3.24 -20.50 16 22 C 0.03 1.13 9.33 127.69 1.19 2.32 16 23 H 0.04 1.56 7.29 -2.39 -0.02 1.54 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.10 4.81 6.21 -2.91 -0.02 4.80 16 28 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.09 2.81 8.12 -2.39 -0.02 2.79 16 32 H 0.10 2.81 8.07 -2.38 -0.02 2.79 16 33 H -0.01 -0.47 7.63 -2.39 -0.02 -0.49 16 Total: -1.00 -70.58 274.73 3.53 -67.04 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.11 Total: 17.91 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.70 Total: -2.71 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -4.25 Total: -90.44 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.05 Total: -36.21 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -70.58 3.53 -67.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.557 kcal (2) G-P(sol) polarization free energy of solvation -70.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds