Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38281 * 119.85594 * 2 1 4 4 C 1.38302 * 120.15036 * 179.97438 * 3 2 1 5 5 C 1.38495 * 119.87845 * 359.97438 * 4 3 2 6 6 C 1.39452 * 120.07593 * 0.12207 * 5 4 3 7 7 C 1.38221 * 119.84885 * 180.02562 * 2 1 3 8 8 N 1.39682 * 120.21527 * 179.73606 * 6 5 4 9 9 C 1.46898 * 111.00359 * 160.35940 * 8 6 5 10 10 C 1.50697 * 109.47573 * 184.04946 * 9 8 6 11 11 H 1.08004 * 119.99976 * 354.77145 * 10 9 8 12 12 C 1.37880 * 120.00114 * 174.77841 * 10 9 8 13 13 N 1.31509 * 120.00183 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46846 * 89.99860 * 14 12 10 16 16 H 1.48503 * 109.46753 * 209.99484 * 14 12 10 17 17 H 1.48489 * 109.47421 * 329.99725 * 14 12 10 18 18 C 1.46640 * 111.93411 * 35.72556 * 8 6 5 19 19 C 1.50679 * 110.04703 * 309.38103 * 18 8 6 20 20 O 1.21299 * 120.27543 * 214.94296 * 19 18 8 21 21 N 1.35135 * 119.44863 * 34.91604 * 19 18 8 22 22 H 1.08990 * 109.47369 * 269.99592 * 1 2 3 23 23 H 1.08999 * 109.46492 * 29.99220 * 1 2 3 24 24 H 1.09003 * 109.46972 * 149.98502 * 1 2 3 25 25 H 1.08001 * 119.92338 * 359.94057 * 3 2 1 26 26 H 1.08003 * 120.05794 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.02228 * 0.32999 * 7 2 1 28 28 H 1.09005 * 109.47192 * 304.04849 * 9 8 6 29 29 H 1.09000 * 109.47211 * 64.04377 * 9 8 6 30 30 H 0.96996 * 120.00511 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.37411 * 69.55659 * 18 8 6 32 32 H 1.09006 * 109.37827 * 189.32086 * 18 8 6 33 33 H 0.97003 * 120.69798 * 179.22016 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1993 0.0000 4 6 3.5785 1.2064 0.0005 5 6 4.2745 0.0091 0.0016 6 6 3.5825 -1.2016 -0.0004 7 6 2.1950 -1.1988 -0.0005 8 7 4.2817 -2.4109 -0.0049 9 6 3.4278 -3.5144 0.4546 10 6 4.2412 -4.7807 0.5312 11 1 5.2644 -4.7870 0.1855 12 6 3.6792 -5.9313 1.0424 13 7 2.4334 -5.9236 1.4636 14 14 4.6873 -7.5011 1.1366 15 1 5.3901 -7.5603 2.4434 16 1 3.7880 -8.6755 1.0045 17 1 5.6850 -7.5155 0.0369 18 6 5.5132 -2.3345 0.7874 19 6 6.3177 -1.1285 0.3766 20 8 7.5299 -1.1727 0.3776 21 7 5.6775 0.0026 0.0066 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3632 0.8901 -0.5137 24 1 -0.3633 -0.8899 -0.5141 25 1 1.6519 2.1325 -0.0010 26 1 4.1146 2.1439 0.0010 27 1 1.6529 -2.1330 -0.0063 28 1 3.0289 -3.2786 1.4412 29 1 2.6047 -3.6531 -0.2464 30 1 2.0381 -6.7328 1.8236 31 1 5.2589 -2.2567 1.8444 32 1 6.1053 -3.2350 0.6233 33 1 6.1774 0.7932 -0.2504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -5.525808 kcal Electronic energy + Delta-G solvation = -17589.657825 eV Core-core repulsion = 14807.905244 eV Total energy + Delta-G solvation = -2781.752580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79699 -38.47499 -36.42099 -35.08669 -32.71366 -31.15509 -29.91679 -28.13504 -26.28589 -25.54447 -23.13395 -21.74482 -21.02295 -18.80283 -17.92916 -17.14870 -16.40826 -15.47794 -15.37025 -14.50785 -14.41697 -14.34989 -13.73504 -13.64338 -13.36609 -13.25146 -12.59601 -12.16561 -12.10428 -11.86096 -11.68802 -11.27130 -10.96102 -10.87907 -10.81620 -10.17083 -10.15437 -9.69264 -9.64049 -9.11032 -8.57542 -8.01260 -6.96455 -6.23412 -4.27971 1.49277 1.70604 2.78915 3.23328 3.30261 3.32811 3.34836 4.01624 4.26074 4.49833 4.73352 4.98875 5.11862 5.15479 5.44611 5.53972 5.70359 5.74546 5.81082 5.83535 6.04248 6.17734 6.23853 6.32667 6.45981 6.82869 6.92666 6.97545 7.09936 7.13133 7.33011 7.56199 7.62779 7.86063 8.21053 8.27592 8.77257 9.38499 10.87042 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.008010 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.162764 B = 3494.636582 C = 4779.902479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.124 4.124 5 C 0.096 3.904 6 C 0.109 3.891 7 C -0.136 4.136 8 N -0.483 5.483 9 C 0.194 3.806 10 C -0.532 4.532 11 H 0.068 0.932 12 C 0.064 3.936 13 N -0.890 5.890 14 Si 0.901 3.099 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.053 3.947 19 C 0.523 3.477 20 O -0.534 6.534 21 N -0.664 5.664 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.140 0.860 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 12.316 -1.377 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.080 4.080 3 C -0.158 4.158 4 C -0.145 4.145 5 C -0.002 4.002 6 C 0.006 3.994 7 C -0.158 4.158 8 N -0.196 5.196 9 C 0.071 3.929 10 C -0.570 4.570 11 H 0.086 0.914 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.728 3.272 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.076 4.076 19 C 0.312 3.688 20 O -0.409 6.409 21 N -0.310 5.310 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.158 0.842 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.685 11.759 -1.699 12.000 hybrid contribution 0.434 -0.374 0.561 0.802 sum -1.252 11.385 -1.138 11.510 Atomic orbital electron populations 1.20742 0.91356 1.02442 1.02139 1.19715 0.95879 0.92615 0.99786 1.20588 0.92992 0.97297 1.04895 1.20432 0.94390 0.95281 1.04404 1.17516 0.82099 0.93540 1.07012 1.18991 0.92722 0.88870 0.98816 1.21032 0.91869 0.98885 1.04044 1.58666 1.06701 1.03328 1.50946 1.20039 0.91995 0.85855 0.94980 1.21163 0.99374 0.94004 1.42509 0.91394 1.24950 0.95059 0.99188 0.94721 1.69928 1.12708 1.29000 1.41166 0.86443 0.79919 0.82166 0.78697 1.20429 1.21015 1.19558 1.22206 0.91548 0.96658 0.97163 1.21293 0.88153 0.84360 0.75024 1.90719 1.13937 1.83635 1.52612 1.43737 1.05161 1.15547 1.66512 0.91371 0.91954 0.91465 0.86249 0.86042 0.84191 0.96599 0.93748 0.92499 0.90654 0.85032 0.75682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.00 36.01 0.36 -0.90 16 2 C -0.08 -1.13 5.88 -104.61 -0.62 -1.75 16 3 C -0.14 -1.78 9.69 -39.54 -0.38 -2.16 16 4 C -0.12 -1.66 9.95 -39.46 -0.39 -2.05 16 5 C 0.10 1.56 6.50 -83.44 -0.54 1.02 16 6 C 0.11 2.05 5.91 -83.64 -0.49 1.56 16 7 C -0.14 -2.39 8.61 -39.40 -0.34 -2.73 16 8 N -0.48 -10.26 4.77 -173.94 -0.83 -11.09 16 9 C 0.19 4.67 3.74 -4.98 -0.02 4.65 16 10 C -0.53 -13.98 8.39 -34.44 -0.29 -14.26 16 11 H 0.07 1.76 6.26 -52.48 -0.33 1.44 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 14 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.05 1.06 5.08 -5.13 -0.03 1.04 16 19 C 0.52 9.88 7.91 -10.83 -0.09 9.79 16 20 O -0.53 -11.18 17.96 5.54 0.10 -11.08 16 21 N -0.66 -10.59 5.49 -9.65 -0.05 -10.64 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 24 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.14 2.61 5.99 -52.48 -0.31 2.30 16 28 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 29 H 0.04 1.12 6.80 -51.93 -0.35 0.77 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 32 H 0.13 2.77 6.24 -51.93 -0.32 2.44 16 33 H 0.41 5.31 8.90 -40.82 -0.36 4.95 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -29.30 278.53 -7.56 -36.86 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.76 Total: 4.27 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.92 Total: -4.20 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.15 Total: -45.69 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.10 Total: -11.08 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.30 -7.56 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.330 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds