Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38281 * 119.85594 * 2 1 4 4 C 1.38302 * 120.15036 * 179.97438 * 3 2 1 5 5 C 1.38495 * 119.87845 * 359.97438 * 4 3 2 6 6 C 1.39452 * 120.07593 * 0.12207 * 5 4 3 7 7 C 1.38221 * 119.84885 * 180.02562 * 2 1 3 8 8 N 1.39682 * 120.21527 * 179.73606 * 6 5 4 9 9 C 1.46898 * 111.00359 * 160.35940 * 8 6 5 10 10 C 1.50697 * 109.47573 * 184.04946 * 9 8 6 11 11 H 1.08004 * 119.99976 * 354.77145 * 10 9 8 12 12 C 1.37880 * 120.00114 * 174.77841 * 10 9 8 13 13 N 1.31509 * 120.00183 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46846 * 89.99860 * 14 12 10 16 16 H 1.48503 * 109.46753 * 209.99484 * 14 12 10 17 17 H 1.48489 * 109.47421 * 329.99725 * 14 12 10 18 18 C 1.46640 * 111.93411 * 35.72556 * 8 6 5 19 19 C 1.50679 * 110.04703 * 309.38103 * 18 8 6 20 20 O 1.21299 * 120.27543 * 214.94296 * 19 18 8 21 21 N 1.35135 * 119.44863 * 34.91604 * 19 18 8 22 22 H 1.08990 * 109.47369 * 269.99592 * 1 2 3 23 23 H 1.08999 * 109.46492 * 29.99220 * 1 2 3 24 24 H 1.09003 * 109.46972 * 149.98502 * 1 2 3 25 25 H 1.08001 * 119.92338 * 359.94057 * 3 2 1 26 26 H 1.08003 * 120.05794 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.02228 * 0.32999 * 7 2 1 28 28 H 1.09005 * 109.47192 * 304.04849 * 9 8 6 29 29 H 1.09000 * 109.47211 * 64.04377 * 9 8 6 30 30 H 0.96996 * 120.00511 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.37411 * 69.55659 * 18 8 6 32 32 H 1.09006 * 109.37827 * 189.32086 * 18 8 6 33 33 H 0.97003 * 120.69798 * 179.22016 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1993 0.0000 4 6 3.5785 1.2064 0.0005 5 6 4.2745 0.0091 0.0016 6 6 3.5825 -1.2016 -0.0004 7 6 2.1950 -1.1988 -0.0005 8 7 4.2817 -2.4109 -0.0049 9 6 3.4278 -3.5144 0.4546 10 6 4.2412 -4.7807 0.5312 11 1 5.2644 -4.7870 0.1855 12 6 3.6792 -5.9313 1.0424 13 7 2.4334 -5.9236 1.4636 14 14 4.6873 -7.5011 1.1366 15 1 5.3901 -7.5603 2.4434 16 1 3.7880 -8.6755 1.0045 17 1 5.6850 -7.5155 0.0369 18 6 5.5132 -2.3345 0.7874 19 6 6.3177 -1.1285 0.3766 20 8 7.5299 -1.1727 0.3776 21 7 5.6775 0.0026 0.0066 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3632 0.8901 -0.5137 24 1 -0.3633 -0.8899 -0.5141 25 1 1.6519 2.1325 -0.0010 26 1 4.1146 2.1439 0.0010 27 1 1.6529 -2.1330 -0.0063 28 1 3.0289 -3.2786 1.4412 29 1 2.6047 -3.6531 -0.2464 30 1 2.0381 -6.7328 1.8236 31 1 5.2589 -2.2567 1.8444 32 1 6.1053 -3.2350 0.6233 33 1 6.1774 0.7932 -0.2504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -25.403373 kcal Electronic energy + Delta-G solvation = -17590.519780 eV Core-core repulsion = 14807.905244 eV Total energy + Delta-G solvation = -2782.614536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.21661 -39.88748 -37.93067 -36.47016 -34.70614 -32.30884 -31.27443 -29.97597 -27.61973 -27.05467 -24.73340 -23.12338 -22.54440 -20.15414 -19.44042 -18.62134 -18.19812 -17.06645 -17.03092 -16.11436 -15.90894 -15.59727 -15.18533 -15.02663 -14.85943 -14.47341 -14.18412 -13.70121 -13.50484 -13.34872 -12.99102 -12.77879 -12.74460 -12.44786 -12.27640 -11.91133 -11.54674 -11.37112 -11.21516 -10.82602 -10.52810 -9.30075 -8.40248 -8.29394 -6.40867 0.21034 0.46532 1.33883 1.40658 1.41323 1.52705 1.98464 2.35205 2.71649 2.96879 3.06018 3.30342 3.78526 4.04304 4.12901 4.35937 4.38109 4.46854 4.49532 4.80991 4.88510 4.93107 5.02048 5.05659 5.16610 5.23201 5.33714 5.52567 5.68725 5.73428 5.82863 5.86092 5.96938 6.08663 6.49230 6.71205 6.89302 7.29571 8.81643 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.008010 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.162764 B = 3494.636582 C = 4779.902479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.107 4.107 5 C 0.083 3.917 6 C 0.070 3.930 7 C -0.157 4.157 8 N -0.494 5.494 9 C 0.216 3.784 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.016 3.984 13 N -0.921 5.921 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.268 1.268 18 C 0.054 3.946 19 C 0.529 3.471 20 O -0.558 6.558 21 N -0.645 5.645 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.164 0.836 26 H 0.164 0.836 27 H 0.113 0.887 28 H -0.010 1.010 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 14.834 -1.649 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.128 4.128 5 C -0.014 4.014 6 C -0.030 4.030 7 C -0.179 4.179 8 N -0.209 5.209 9 C 0.093 3.907 10 C -0.586 4.586 11 H 0.084 0.916 12 C -0.184 4.184 13 N -0.560 5.560 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.192 1.192 18 C -0.075 4.075 19 C 0.317 3.683 20 O -0.435 6.435 21 N -0.292 5.292 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.182 0.818 26 H 0.181 0.819 27 H 0.131 0.869 28 H 0.008 0.992 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.965 14.338 -1.987 14.608 hybrid contribution 0.375 -0.997 0.639 1.242 sum -1.590 13.341 -1.348 13.503 Atomic orbital electron populations 1.20816 0.89210 1.03582 1.03030 1.20095 0.97543 0.92005 0.98264 1.21119 0.92979 0.98159 1.01841 1.20925 0.94803 0.95485 1.01555 1.17695 0.82015 0.93708 1.07947 1.19189 0.93435 0.88826 1.01597 1.20998 0.91666 0.99463 1.05782 1.58605 1.06749 1.03981 1.51559 1.19551 0.91589 0.86648 0.92956 1.21484 0.99538 0.95148 1.42418 0.91600 1.25781 0.96066 1.02306 0.94288 1.70037 1.14141 1.29936 1.41916 0.85435 0.78458 0.78271 0.78850 1.19681 1.20389 1.19245 1.22074 0.91344 0.97103 0.97007 1.20884 0.87529 0.84750 0.75148 1.90704 1.14625 1.84130 1.54073 1.43479 1.05230 1.15169 1.65311 0.90491 0.88874 0.92332 0.81843 0.81876 0.86894 0.99210 0.95855 0.92271 0.91095 0.86745 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.00 71.24 0.71 -1.53 16 2 C -0.08 -2.08 5.88 -19.86 -0.12 -2.19 16 3 C -0.12 -2.57 9.69 22.30 0.22 -2.36 16 4 C -0.11 -2.40 9.95 22.35 0.22 -2.18 16 5 C 0.08 2.57 6.50 38.14 0.25 2.82 16 6 C 0.07 2.70 5.91 38.31 0.23 2.93 16 7 C -0.16 -5.65 8.61 22.39 0.19 -5.46 16 8 N -0.49 -22.06 4.77 -704.23 -3.36 -25.42 16 9 C 0.22 11.13 3.74 85.56 0.32 11.45 16 10 C -0.55 -30.08 8.39 25.60 0.21 -29.86 16 11 H 0.07 3.57 6.26 -2.91 -0.02 3.55 16 12 C 0.02 0.87 5.46 84.66 0.46 1.33 16 13 N -0.92 -52.85 13.29 21.45 0.28 -52.56 16 14 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 C 0.05 2.25 5.08 85.60 0.44 2.69 16 19 C 0.53 20.03 7.91 87.59 0.69 20.72 16 20 O -0.56 -23.38 17.96 -3.09 -0.06 -23.43 16 21 N -0.64 -19.55 5.49 -302.61 -1.66 -21.21 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 24 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.11 4.58 5.99 -2.91 -0.02 4.56 16 28 H -0.01 -0.55 7.99 -2.38 -0.02 -0.57 16 29 H 0.02 1.28 6.80 -2.39 -0.02 1.27 16 30 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.07 2.95 8.13 -2.39 -0.02 2.93 16 32 H 0.11 5.11 6.24 -2.38 -0.01 5.09 16 33 H 0.42 9.91 8.90 -92.71 -0.83 9.08 16 Total: -1.00 -65.85 278.53 1.38 -64.48 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.31 Total: 14.59 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 3.83 Total: -1.64 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.74 Total: -99.19 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.85 1.38 -64.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.074 kcal (2) G-P(sol) polarization free energy of solvation -65.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds