Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38264 * 120.01603 * 2 1 4 4 C 1.38245 * 120.29505 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.14701 * 0.05236 * 4 3 2 6 6 C 1.38449 * 119.87880 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.01948 * 180.02562 * 2 1 3 8 8 N 1.39683 * 120.16094 * 359.85560 * 7 2 1 9 9 C 1.46901 * 111.00094 * 268.96226 * 8 7 2 10 10 C 1.50699 * 109.47413 * 168.93429 * 9 8 7 11 11 H 1.08005 * 120.00053 * 4.88667 * 10 9 8 12 12 C 1.37879 * 120.00497 * 184.88009 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00134 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47324 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46762 * 120.00492 * 14 12 10 17 17 H 1.48496 * 109.46819 * 239.99978 * 14 12 10 18 18 C 1.46635 * 111.93985 * 144.32258 * 8 7 2 19 19 C 1.50672 * 110.05438 * 50.61911 * 18 8 7 20 20 O 1.21293 * 120.27252 * 145.05601 * 19 18 8 21 21 N 1.35135 * 119.45475 * 325.07188 * 19 18 8 22 22 H 1.09003 * 109.46993 * 269.97459 * 1 2 3 23 23 H 1.08998 * 109.47204 * 29.98064 * 1 2 3 24 24 H 1.08997 * 109.46753 * 149.97936 * 1 2 3 25 25 H 1.08000 * 119.85379 * 0.03566 * 3 2 1 26 26 H 1.07997 * 119.92484 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.05631 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47480 * 288.93880 * 9 8 7 29 29 H 1.08998 * 109.46927 * 48.93716 * 9 8 7 30 30 H 0.96992 * 119.99999 * 180.02562 * 13 12 10 31 31 H 1.09007 * 109.37558 * 170.80000 * 18 8 7 32 32 H 1.09004 * 109.36940 * 290.43872 * 18 8 7 33 33 H 0.96997 * 120.70328 * 180.80881 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1972 0.0000 4 6 3.5811 1.2039 -0.0005 5 6 4.2817 0.0110 -0.0022 6 6 3.5959 -1.1917 -0.0038 7 6 2.2009 -1.2010 -0.0005 8 7 1.5063 -2.4129 0.0020 9 6 1.2691 -2.8809 1.3741 10 6 0.2952 -4.0307 1.3514 11 1 -0.0466 -4.4304 0.4080 12 6 -0.1597 -4.5725 2.5349 13 7 0.2561 -4.0855 3.6836 14 14 -1.3664 -5.9981 2.5066 15 1 -1.6746 -6.3580 1.0993 16 1 -0.7661 -7.1683 3.1963 17 1 -2.6171 -5.6017 3.2020 18 6 2.1908 -3.4383 -0.7920 19 6 3.6377 -3.5292 -0.3816 20 8 4.2080 -4.5997 -0.3844 21 7 4.2947 -2.4083 -0.0100 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6565 2.1313 0.0006 26 1 4.1153 2.1425 -0.0001 27 1 5.3617 0.0180 -0.0030 28 1 2.2105 -3.2108 1.8134 29 1 0.8560 -2.0666 1.9693 30 1 -0.0635 -4.4668 4.5162 31 1 1.7080 -4.4023 -0.6310 32 1 2.1302 -3.1776 -1.8486 33 1 5.2294 -2.4441 0.2463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261208026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -4.181027 kcal Electronic energy + Delta-G solvation = -17940.674868 eV Core-core repulsion = 15158.980602 eV Total energy + Delta-G solvation = -2781.694266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88712 -38.36775 -36.07491 -34.90115 -32.71703 -31.47824 -29.21208 -27.96639 -26.58185 -25.29132 -22.74770 -22.05151 -21.14743 -19.01347 -17.41510 -17.03842 -16.18051 -15.94230 -15.28299 -14.64154 -14.46869 -14.30919 -13.71576 -13.50009 -13.12152 -12.90669 -12.41649 -12.06089 -11.99800 -11.80308 -11.24643 -11.07528 -11.02488 -10.74519 -10.69557 -10.24997 -10.16431 -10.07340 -9.41804 -8.58430 -8.41619 -7.93084 -7.34345 -6.12802 -4.16249 1.49001 1.59944 2.89641 3.27881 3.32668 3.35563 3.39692 3.98552 4.33330 4.54760 4.77912 5.04993 5.17062 5.24242 5.47400 5.58436 5.65329 5.73355 5.96196 6.06562 6.15418 6.23155 6.34092 6.60250 6.64082 6.81044 6.94580 7.00448 7.11469 7.20527 7.39956 7.62247 7.78214 7.97204 8.31579 8.35790 8.88704 9.48658 10.97851 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.008327 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.126578 B = 3361.640956 C = 4080.845247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.042 4.042 3 C -0.138 4.138 4 C -0.105 4.105 5 C -0.154 4.154 6 C 0.122 3.878 7 C 0.076 3.924 8 N -0.482 5.482 9 C 0.198 3.802 10 C -0.517 4.517 11 H 0.068 0.932 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.901 3.099 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.046 3.954 19 C 0.496 3.504 20 O -0.531 6.531 21 N -0.668 5.668 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.120 0.880 28 H -0.006 1.006 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 10.220 -7.584 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.044 4.044 3 C -0.157 4.157 4 C -0.124 4.124 5 C -0.176 4.176 6 C 0.024 3.976 7 C -0.023 4.023 8 N -0.201 5.201 9 C 0.076 3.924 10 C -0.555 4.555 11 H 0.086 0.914 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.085 4.085 19 C 0.283 3.717 20 O -0.405 6.405 21 N -0.314 5.314 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.803 9.533 -7.647 12.799 hybrid contribution 0.763 -0.826 0.739 1.345 sum 4.566 8.707 -6.908 12.016 Atomic orbital electron populations 1.20687 0.90175 1.02715 1.02782 1.19615 0.96701 0.90534 0.97581 1.20881 0.93983 0.97193 1.03649 1.20801 0.94116 0.96920 1.00612 1.20540 0.99301 0.90902 1.06808 1.18445 0.91758 0.85717 1.01720 1.18634 0.88049 0.92738 1.02836 1.59453 1.42742 0.99859 1.18032 1.19906 0.96026 0.96441 0.79989 1.21119 1.26090 1.15360 0.92947 0.91393 1.24976 0.96642 0.97365 0.95285 1.69964 1.44113 1.41712 0.97399 0.86389 0.80606 0.81851 0.78319 1.19461 1.21008 1.20889 1.22503 0.86758 1.00317 0.98877 1.22334 0.90979 0.82713 0.75634 1.90704 1.69951 1.27533 1.52303 1.43928 1.14314 1.06649 1.66510 0.91027 0.92575 0.89642 0.85977 0.86045 0.86175 0.98802 0.93858 0.92749 0.85028 0.88587 0.75801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.77 36.01 0.35 -1.28 16 2 C -0.04 -0.69 5.90 -104.44 -0.62 -1.30 16 3 C -0.14 -1.84 9.69 -39.57 -0.38 -2.23 16 4 C -0.11 -1.32 10.04 -39.54 -0.40 -1.71 16 5 C -0.15 -2.12 9.95 -39.46 -0.39 -2.51 16 6 C 0.12 2.06 6.50 -83.43 -0.54 1.51 16 7 C 0.08 1.40 4.79 -83.64 -0.40 1.00 16 8 N -0.48 -9.98 3.59 -173.94 -0.62 -10.60 16 9 C 0.20 5.01 4.58 -4.98 -0.02 4.99 16 10 C -0.52 -13.96 8.42 -34.44 -0.29 -14.25 16 11 H 0.07 1.78 7.02 -52.48 -0.37 1.41 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 14 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.05 0.90 5.78 -5.13 -0.03 0.87 16 19 C 0.50 9.99 7.06 -10.84 -0.08 9.91 16 20 O -0.53 -12.11 17.96 5.55 0.10 -12.01 16 21 N -0.67 -11.60 5.49 -9.65 -0.05 -11.66 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.08 1.43 7.46 -51.93 -0.39 1.04 16 25 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H -0.01 -0.16 7.46 -51.93 -0.39 -0.55 16 29 H 0.04 1.17 8.04 -51.93 -0.42 0.76 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.13 2.76 6.48 -51.93 -0.34 2.42 16 32 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.40 6.05 8.90 -40.82 -0.36 5.69 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -31.09 281.33 -7.45 -38.53 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.93 Total: 4.02 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.90 Total: -3.43 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.06 Total: -47.62 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.10 Total: -12.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.09 -7.45 -38.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.353 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds