Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38264 * 120.01603 * 2 1 4 4 C 1.38245 * 120.29505 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.14701 * 0.05236 * 4 3 2 6 6 C 1.38449 * 119.87880 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.01948 * 180.02562 * 2 1 3 8 8 N 1.39683 * 120.16094 * 359.85560 * 7 2 1 9 9 C 1.46901 * 111.00094 * 268.96226 * 8 7 2 10 10 C 1.50699 * 109.47413 * 168.93429 * 9 8 7 11 11 H 1.08005 * 120.00053 * 4.88667 * 10 9 8 12 12 C 1.37879 * 120.00497 * 184.88009 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00134 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47324 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46762 * 120.00492 * 14 12 10 17 17 H 1.48496 * 109.46819 * 239.99978 * 14 12 10 18 18 C 1.46635 * 111.93985 * 144.32258 * 8 7 2 19 19 C 1.50672 * 110.05438 * 50.61911 * 18 8 7 20 20 O 1.21293 * 120.27252 * 145.05601 * 19 18 8 21 21 N 1.35135 * 119.45475 * 325.07188 * 19 18 8 22 22 H 1.09003 * 109.46993 * 269.97459 * 1 2 3 23 23 H 1.08998 * 109.47204 * 29.98064 * 1 2 3 24 24 H 1.08997 * 109.46753 * 149.97936 * 1 2 3 25 25 H 1.08000 * 119.85379 * 0.03566 * 3 2 1 26 26 H 1.07997 * 119.92484 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.05631 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47480 * 288.93880 * 9 8 7 29 29 H 1.08998 * 109.46927 * 48.93716 * 9 8 7 30 30 H 0.96992 * 119.99999 * 180.02562 * 13 12 10 31 31 H 1.09007 * 109.37558 * 170.80000 * 18 8 7 32 32 H 1.09004 * 109.36940 * 290.43872 * 18 8 7 33 33 H 0.96997 * 120.70328 * 180.80881 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1972 0.0000 4 6 3.5811 1.2039 -0.0005 5 6 4.2817 0.0110 -0.0022 6 6 3.5959 -1.1917 -0.0038 7 6 2.2009 -1.2010 -0.0005 8 7 1.5063 -2.4129 0.0020 9 6 1.2691 -2.8809 1.3741 10 6 0.2952 -4.0307 1.3514 11 1 -0.0466 -4.4304 0.4080 12 6 -0.1597 -4.5725 2.5349 13 7 0.2561 -4.0855 3.6836 14 14 -1.3664 -5.9981 2.5066 15 1 -1.6746 -6.3580 1.0993 16 1 -0.7661 -7.1683 3.1963 17 1 -2.6171 -5.6017 3.2020 18 6 2.1908 -3.4383 -0.7920 19 6 3.6377 -3.5292 -0.3816 20 8 4.2080 -4.5997 -0.3844 21 7 4.2947 -2.4083 -0.0100 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6565 2.1313 0.0006 26 1 4.1153 2.1425 -0.0001 27 1 5.3617 0.0180 -0.0030 28 1 2.2105 -3.2108 1.8134 29 1 0.8560 -2.0666 1.9693 30 1 -0.0635 -4.4668 4.5162 31 1 1.7080 -4.4023 -0.6310 32 1 2.1302 -3.1776 -1.8486 33 1 5.2294 -2.4441 0.2463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -25.326464 kcal Electronic energy + Delta-G solvation = -17941.591803 eV Core-core repulsion = 15158.980602 eV Total energy + Delta-G solvation = -2782.611201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.31926 -39.80031 -37.60673 -36.32439 -34.73742 -32.76149 -30.54831 -29.87906 -27.83748 -26.95076 -24.26245 -23.79369 -22.41095 -20.40808 -19.01677 -18.46273 -18.09606 -17.49917 -16.74485 -16.43152 -15.78947 -15.71308 -15.33247 -14.98918 -14.49257 -14.30122 -14.16772 -13.74783 -13.32144 -13.09375 -12.91714 -12.77740 -12.52179 -12.39234 -12.14995 -12.01335 -11.75188 -11.54653 -11.40648 -10.67988 -9.89827 -9.22252 -8.80728 -8.26106 -6.36874 0.23156 0.41760 1.38332 1.40236 1.41529 1.54387 1.93623 2.37112 2.77886 3.00954 3.10979 3.31278 3.87649 4.11682 4.15757 4.37222 4.47201 4.48380 4.65454 4.76669 4.92094 4.95131 5.01199 5.11931 5.18636 5.41035 5.46694 5.57189 5.61805 5.75644 5.85655 5.95963 5.97210 6.08856 6.60024 6.75716 6.86076 7.32769 8.85386 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.008327 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.126578 B = 3361.640956 C = 4080.845247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.057 4.057 3 C -0.129 4.129 4 C -0.090 4.090 5 C -0.146 4.146 6 C 0.098 3.902 7 C 0.033 3.967 8 N -0.478 5.478 9 C 0.223 3.777 10 C -0.528 4.528 11 H 0.071 0.929 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.969 3.031 15 H -0.259 1.259 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.046 3.954 19 C 0.491 3.509 20 O -0.569 6.569 21 N -0.658 5.658 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.157 0.843 26 H 0.166 0.834 27 H 0.151 0.849 28 H -0.046 1.046 29 H 0.016 0.984 30 H 0.265 0.735 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 12.468 -8.612 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.167 4.167 6 C 0.001 3.999 7 C -0.065 4.065 8 N -0.197 5.197 9 C 0.099 3.901 10 C -0.566 4.566 11 H 0.090 0.910 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.794 3.206 15 H -0.183 1.183 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.084 4.084 19 C 0.279 3.721 20 O -0.446 6.446 21 N -0.304 5.304 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.175 0.825 26 H 0.184 0.816 27 H 0.169 0.831 28 H -0.028 1.028 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.063 11.843 -8.695 15.244 hybrid contribution 0.760 -1.320 1.042 1.846 sum 4.824 10.523 -7.653 13.877 Atomic orbital electron populations 1.20639 0.90076 1.03383 1.01827 1.19896 0.97152 0.90947 0.97899 1.21313 0.94780 0.97219 1.01497 1.21354 0.93879 0.98085 0.97525 1.20963 1.00955 0.89938 1.04852 1.18681 0.91405 0.86390 1.03385 1.18890 0.89130 0.92284 1.06161 1.59305 1.44203 1.00956 1.15217 1.19383 0.93401 0.94933 0.82386 1.21474 1.26105 1.15883 0.93175 0.91049 1.25905 0.98512 1.00081 0.94890 1.70090 1.45620 1.43329 0.98085 0.85326 0.78287 0.78194 0.78817 1.18285 1.21003 1.19950 1.22483 0.86355 0.99232 1.00373 1.22394 0.91252 0.82921 0.75539 1.90672 1.70691 1.28893 1.54380 1.43768 1.14756 1.06396 1.65466 0.92741 0.89012 0.91875 0.82537 0.81618 0.83148 1.02850 0.96548 0.92606 0.87116 0.85488 0.74541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.06 9.77 71.24 0.70 -2.36 16 2 C -0.06 -1.77 5.90 -19.75 -0.12 -1.89 16 3 C -0.13 -2.94 9.69 22.28 0.22 -2.72 16 4 C -0.09 -1.79 10.04 22.30 0.22 -1.57 16 5 C -0.15 -3.50 9.95 22.35 0.22 -3.28 16 6 C 0.10 3.22 6.50 38.14 0.25 3.46 16 7 C 0.03 1.21 4.79 38.31 0.18 1.39 16 8 N -0.48 -20.47 3.59 -704.24 -2.53 -23.00 16 9 C 0.22 11.84 4.58 85.56 0.39 12.23 16 10 C -0.53 -29.60 8.42 25.60 0.22 -29.38 16 11 H 0.07 3.86 7.02 -2.91 -0.02 3.84 16 12 C 0.00 0.27 5.46 84.65 0.46 0.74 16 13 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 14 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 15 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.05 1.86 5.78 85.60 0.49 2.36 16 19 C 0.49 20.39 7.06 87.59 0.62 21.01 16 20 O -0.57 -26.92 17.96 -3.07 -0.06 -26.98 16 21 N -0.66 -22.88 5.49 -302.62 -1.66 -24.54 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 24 H 0.06 2.14 7.46 -2.39 -0.02 2.12 16 25 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 26 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H -0.05 -2.77 7.46 -2.39 -0.02 -2.79 16 29 H 0.02 0.94 8.04 -2.39 -0.02 0.93 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.11 4.88 6.48 -2.38 -0.02 4.87 16 32 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.42 12.28 8.90 -92.71 -0.83 11.45 16 Total: -1.00 -70.78 281.33 2.23 -68.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.31 Total: 15.47 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.86 Total: 0.00 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.90 Total: -103.45 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.78 2.23 -68.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.226 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds