Wall clock time and date at job start Mon Mar 30 2020 04:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47003 * 2 1 4 4 C 1.50709 * 109.46869 * 119.99199 * 2 1 3 5 5 H 1.07996 * 119.99551 * 120.00230 * 4 2 1 6 6 C 1.37872 * 120.00129 * 299.99918 * 4 2 1 7 7 N 1.31514 * 120.00108 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47434 * 89.99976 * 8 6 4 10 10 H 1.48501 * 109.46875 * 210.00397 * 8 6 4 11 11 H 1.48501 * 109.46907 * 330.00176 * 8 6 4 12 12 N 1.46496 * 109.47381 * 239.99411 * 2 1 3 13 13 C 1.39288 * 125.81924 * 120.00219 * 12 2 1 14 14 C 1.38665 * 133.33364 * 0.02562 * 13 12 2 15 15 C 1.38106 * 119.84907 * 179.68759 * 14 13 12 16 16 C 1.38439 * 120.28266 * 0.02562 * 15 14 13 17 17 C 1.38105 * 120.28417 * 359.97438 * 16 15 14 18 18 C 1.38659 * 119.85051 * 359.97438 * 17 16 15 19 19 N 1.39290 * 133.33434 * 180.02562 * 18 17 16 20 20 C 1.46503 * 125.81513 * 0.02562 * 19 18 17 21 21 C 1.34634 * 108.36340 * 180.02562 * 19 18 17 22 22 O 1.21687 * 125.16168 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.47115 * 300.00831 * 1 2 3 24 24 H 1.08995 * 109.46723 * 60.00533 * 1 2 3 25 25 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 26 26 H 0.96999 * 120.00034 * 179.97438 * 7 6 4 27 27 H 1.08007 * 120.07365 * 359.66161 * 14 13 12 28 28 H 1.08002 * 119.85215 * 180.02562 * 15 14 13 29 29 H 1.08006 * 119.85463 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.07155 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47413 * 90.00070 * 20 19 18 32 32 H 1.09003 * 109.46644 * 209.99738 * 20 19 18 33 33 H 1.09001 * 109.46959 * 329.99135 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3225 -1.1191 4.0081 9 1 3.6304 -0.5436 4.4120 10 1 1.3443 -0.9484 5.1124 11 1 2.4880 -2.5649 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 2.8226 -0.1339 -2.1877 14 6 3.3780 1.1239 -2.3676 15 6 4.1568 1.3788 -3.4793 16 6 4.3849 0.3842 -4.4148 17 6 3.8359 -0.8716 -4.2442 18 6 3.0535 -1.1373 -3.1307 19 7 2.3783 -2.2713 -2.6854 20 6 2.3414 -3.5689 -3.3644 21 6 1.7653 -1.9716 -1.5248 22 8 1.0888 -2.7426 -0.8701 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7081 1.1612 3.4843 27 1 3.2016 1.9026 -1.6402 28 1 4.5898 2.3583 -3.6192 29 1 4.9947 0.5912 -5.2819 30 1 4.0157 -1.6449 -4.9764 31 1 3.1692 -4.1857 -3.0146 32 1 1.3978 -4.0679 -3.1433 33 1 2.4295 -3.4186 -4.4404 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261212587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:24 Heat of formation + Delta-G solvation = 29.169547 kcal Electronic energy + Delta-G solvation = -17962.327230 eV Core-core repulsion = 15182.079153 eV Total energy + Delta-G solvation = -2780.248077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80638 -37.76859 -35.64092 -35.18505 -33.04697 -30.32438 -30.05236 -28.07505 -26.71248 -25.24472 -22.31243 -21.96941 -21.68030 -19.33998 -17.44631 -16.94069 -16.30654 -15.67407 -15.40110 -14.86988 -13.95477 -13.80804 -13.75543 -13.61908 -13.28234 -12.61355 -12.45200 -12.24945 -11.92276 -11.67413 -11.25520 -11.03763 -10.89423 -10.61156 -10.44032 -10.19208 -10.02852 -9.97369 -9.49236 -8.98691 -8.47992 -7.90465 -7.11895 -6.12983 -4.18695 1.57587 1.77764 2.85961 3.28352 3.34336 3.41911 3.73617 3.94664 4.10184 4.40292 4.89473 5.06677 5.19703 5.23076 5.42628 5.50076 5.63627 5.69758 5.81319 5.90750 6.16134 6.31036 6.58962 6.76593 6.79067 6.86836 6.90866 7.03215 7.09353 7.36198 7.59548 7.68535 7.92140 8.02900 8.30042 8.80109 9.05816 9.47269 10.92862 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.007988 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.931472 B = 3504.374653 C = 4004.900864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.282 3.718 3 H 0.057 0.943 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.514 5.514 13 C 0.112 3.888 14 C -0.108 4.108 15 C -0.115 4.115 16 C -0.130 4.130 17 C -0.110 4.110 18 C 0.075 3.925 19 N -0.554 5.554 20 C 0.106 3.894 21 C 0.676 3.324 22 O -0.544 6.544 23 H 0.100 0.900 24 H 0.011 0.989 25 H 0.048 0.952 26 H 0.265 0.735 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -0.610 -13.476 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.183 3.817 3 H 0.074 0.926 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.532 5.532 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.232 5.232 13 C 0.008 3.992 14 C -0.130 4.130 15 C -0.135 4.135 16 C -0.150 4.150 17 C -0.132 4.132 18 C -0.027 4.027 19 N -0.278 5.278 20 C -0.036 4.036 21 C 0.379 3.621 22 O -0.419 6.419 23 H 0.118 0.882 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.798 -1.145 -12.709 13.633 hybrid contribution 0.317 -0.494 0.832 1.018 sum 5.115 -1.639 -11.877 13.035 Atomic orbital electron populations 1.22146 0.96973 1.01313 1.00816 1.19093 0.91972 0.92234 0.78357 0.92577 1.21212 1.31778 1.12776 0.89685 0.92073 1.24830 0.94813 0.95011 0.98977 1.69851 1.36424 1.22840 1.24037 0.86385 0.78447 0.80220 0.81821 1.20544 1.20937 1.19742 1.46237 1.44983 1.10266 1.21747 1.18324 0.96715 0.94482 0.89727 1.20146 0.99355 0.94207 0.99290 1.20746 0.99409 0.99306 0.94083 1.20651 1.01877 0.92515 0.99998 1.19884 0.99525 0.97901 0.95886 1.18119 1.00628 0.86496 0.97435 1.45197 1.48610 1.10933 1.23072 1.21551 1.03421 0.82136 0.96487 1.16078 0.82129 0.83054 0.80860 1.90969 1.43614 1.52147 1.55186 0.88209 0.96996 0.93315 0.92538 0.85264 0.85699 0.85868 0.86211 0.92013 0.89939 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.00 37.16 0.33 -3.62 16 2 C 0.28 7.33 2.88 -69.08 -0.20 7.13 16 3 H 0.06 1.47 7.48 -51.93 -0.39 1.08 16 4 C -0.52 -14.77 8.20 -34.44 -0.28 -15.06 16 5 H 0.06 1.84 7.72 -52.49 -0.41 1.44 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.49 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.51 -12.17 2.65 -113.02 -0.30 -12.47 16 13 C 0.11 2.23 6.83 -83.80 -0.57 1.66 16 14 C -0.11 -1.82 9.85 -39.47 -0.39 -2.20 16 15 C -0.12 -1.52 10.03 -39.56 -0.40 -1.91 16 16 C -0.13 -1.58 10.03 -39.56 -0.40 -1.97 16 17 C -0.11 -1.49 10.02 -39.47 -0.40 -1.89 16 18 C 0.08 1.32 6.83 -83.80 -0.57 0.75 16 19 N -0.55 -10.42 3.19 -126.32 -0.40 -10.83 16 20 C 0.11 1.44 11.00 59.85 0.66 2.10 16 21 C 0.68 16.01 7.79 -87.17 -0.68 15.34 16 22 O -0.54 -14.61 16.04 5.20 0.08 -14.53 16 23 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 1.31 6.94 -51.93 -0.36 0.95 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.13 2.12 7.65 -52.48 -0.40 1.72 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -32.38 282.61 -7.70 -40.08 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.96 Total: -1.10 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.98 Total: 2.06 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.07 Total: -47.78 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.38 -7.70 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.248 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds