Wall clock time and date at job start Mon Mar 30 2020 04:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47003 * 2 1 4 4 C 1.50709 * 109.46869 * 119.99199 * 2 1 3 5 5 H 1.07996 * 119.99551 * 120.00230 * 4 2 1 6 6 C 1.37872 * 120.00129 * 299.99918 * 4 2 1 7 7 N 1.31514 * 120.00108 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47434 * 89.99976 * 8 6 4 10 10 H 1.48501 * 109.46875 * 210.00397 * 8 6 4 11 11 H 1.48501 * 109.46907 * 330.00176 * 8 6 4 12 12 N 1.46496 * 109.47381 * 239.99411 * 2 1 3 13 13 C 1.39288 * 125.81924 * 120.00219 * 12 2 1 14 14 C 1.38665 * 133.33364 * 0.02562 * 13 12 2 15 15 C 1.38106 * 119.84907 * 179.68759 * 14 13 12 16 16 C 1.38439 * 120.28266 * 0.02562 * 15 14 13 17 17 C 1.38105 * 120.28417 * 359.97438 * 16 15 14 18 18 C 1.38659 * 119.85051 * 359.97438 * 17 16 15 19 19 N 1.39290 * 133.33434 * 180.02562 * 18 17 16 20 20 C 1.46503 * 125.81513 * 0.02562 * 19 18 17 21 21 C 1.34634 * 108.36340 * 180.02562 * 19 18 17 22 22 O 1.21687 * 125.16168 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.47115 * 300.00831 * 1 2 3 24 24 H 1.08995 * 109.46723 * 60.00533 * 1 2 3 25 25 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 26 26 H 0.96999 * 120.00034 * 179.97438 * 7 6 4 27 27 H 1.08007 * 120.07365 * 359.66161 * 14 13 12 28 28 H 1.08002 * 119.85215 * 180.02562 * 15 14 13 29 29 H 1.08006 * 119.85463 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.07155 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47413 * 90.00070 * 20 19 18 32 32 H 1.09003 * 109.46644 * 209.99738 * 20 19 18 33 33 H 1.09001 * 109.46959 * 329.99135 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3225 -1.1191 4.0081 9 1 3.6304 -0.5436 4.4120 10 1 1.3443 -0.9484 5.1124 11 1 2.4880 -2.5649 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 2.8226 -0.1339 -2.1877 14 6 3.3780 1.1239 -2.3676 15 6 4.1568 1.3788 -3.4793 16 6 4.3849 0.3842 -4.4148 17 6 3.8359 -0.8716 -4.2442 18 6 3.0535 -1.1373 -3.1307 19 7 2.3783 -2.2713 -2.6854 20 6 2.3414 -3.5689 -3.3644 21 6 1.7653 -1.9716 -1.5248 22 8 1.0888 -2.7426 -0.8701 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7081 1.1612 3.4843 27 1 3.2016 1.9026 -1.6402 28 1 4.5898 2.3583 -3.6192 29 1 4.9947 0.5912 -5.2819 30 1 4.0157 -1.6449 -4.9764 31 1 3.1692 -4.1857 -3.0146 32 1 1.3978 -4.0679 -3.1433 33 1 2.4295 -3.4186 -4.4404 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261212587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:24 Heat of formation + Delta-G solvation = 9.347998 kcal Electronic energy + Delta-G solvation = -17963.186757 eV Core-core repulsion = 15182.079153 eV Total energy + Delta-G solvation = -2781.107603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.29102 -39.18767 -37.37673 -36.73052 -34.94824 -32.13528 -31.25178 -29.49109 -28.08067 -27.41928 -23.96090 -23.25810 -23.16778 -20.98844 -18.96237 -18.53508 -18.02210 -17.30588 -16.84537 -16.78768 -15.60847 -15.21805 -15.08820 -14.91254 -14.78835 -14.39025 -13.88470 -13.66778 -13.36093 -13.25532 -13.02909 -12.90513 -12.75640 -12.46977 -12.28124 -11.87063 -11.77083 -11.35059 -11.27459 -10.88704 -10.61804 -9.18757 -8.62400 -8.26392 -6.41123 0.37773 0.57814 1.31855 1.34862 1.38743 1.47522 2.03999 2.32161 2.54141 2.91457 3.00481 3.67485 3.92547 4.17191 4.34936 4.43138 4.49493 4.51189 4.58339 4.67652 4.72983 4.76962 4.85559 5.02911 5.18747 5.28277 5.44995 5.61097 5.64660 5.67298 5.72511 5.93934 5.97795 6.10758 6.59927 6.62790 7.21884 7.40768 8.77354 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.007988 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.931472 B = 3504.374653 C = 4004.900864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.288 3.712 3 H 0.046 0.954 4 C -0.538 4.538 5 H 0.034 0.966 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.962 3.038 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.058 3.942 14 C -0.126 4.126 15 C -0.102 4.102 16 C -0.108 4.108 17 C -0.098 4.098 18 C 0.061 3.939 19 N -0.548 5.548 20 C 0.097 3.903 21 C 0.656 3.344 22 O -0.599 6.599 23 H 0.084 0.916 24 H 0.029 0.971 25 H 0.025 0.975 26 H 0.271 0.729 27 H 0.118 0.882 28 H 0.162 0.838 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 -0.013 -16.145 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.188 3.812 3 H 0.064 0.936 4 C -0.576 4.576 5 H 0.052 0.948 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.211 1.211 12 N -0.249 5.249 13 C -0.044 4.044 14 C -0.147 4.147 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.040 4.040 19 N -0.271 5.271 20 C -0.043 4.043 21 C 0.359 3.641 22 O -0.479 6.479 23 H 0.103 0.897 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.180 0.820 29 H 0.191 0.809 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.129 -0.514 -15.455 17.027 hybrid contribution -0.275 -0.580 1.476 1.609 sum 6.853 -1.094 -13.979 15.607 Atomic orbital electron populations 1.21928 0.97223 0.99661 1.00806 1.18710 0.91736 0.91660 0.79120 0.93608 1.21288 1.32386 1.12387 0.91577 0.94776 1.25550 0.94875 0.95696 1.01383 1.69918 1.36455 1.23331 1.24967 0.85504 0.78852 0.78273 0.78712 1.18927 1.19455 1.21084 1.45954 1.46135 1.10781 1.22011 1.18842 0.98666 0.96724 0.90153 1.20380 1.00455 0.93017 1.00832 1.21231 0.97252 1.01386 0.92314 1.21295 1.00027 0.91030 1.00396 1.20448 0.97222 0.99623 0.94608 1.18542 1.01786 0.85192 0.98505 1.45233 1.47522 1.12795 1.21573 1.21936 1.03531 0.80175 0.98609 1.16364 0.82705 0.82847 0.82225 1.90890 1.46260 1.53470 1.57297 0.89739 0.95234 0.95607 0.91982 0.86374 0.82045 0.80857 0.82172 0.90758 0.90904 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.47 9.00 71.98 0.65 -6.82 16 2 C 0.29 15.86 2.88 44.25 0.13 15.99 16 3 H 0.05 2.56 7.48 -2.39 -0.02 2.54 16 4 C -0.54 -32.50 8.20 25.60 0.21 -32.29 16 5 H 0.03 2.19 7.72 -2.91 -0.02 2.17 16 6 C 0.03 1.47 5.30 84.65 0.45 1.91 16 7 N -0.91 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 9 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 N -0.53 -26.40 2.65 -629.78 -1.67 -28.07 16 13 C 0.06 2.34 6.83 38.39 0.26 2.60 16 14 C -0.13 -4.12 9.85 22.34 0.22 -3.90 16 15 C -0.10 -2.27 10.03 22.29 0.22 -2.04 16 16 C -0.11 -1.96 10.03 22.29 0.22 -1.73 16 17 C -0.10 -2.17 10.02 22.34 0.22 -1.95 16 18 C 0.06 2.04 6.83 38.39 0.26 2.30 16 19 N -0.55 -20.62 3.19 -671.87 -2.14 -22.76 16 20 C 0.10 2.51 11.00 127.77 1.41 3.91 16 21 C 0.66 32.70 7.79 179.14 1.40 34.10 16 22 O -0.60 -34.44 16.04 -4.31 -0.07 -34.51 16 23 H 0.08 4.78 6.07 -2.39 -0.01 4.77 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.02 1.46 6.94 -2.39 -0.02 1.44 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.12 3.99 7.65 -2.91 -0.02 3.97 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.01 8.03 -2.39 -0.02 1.99 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.66 282.61 5.15 -71.51 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.11 Total: 5.60 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.65 Total: 12.09 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.57 Total: -102.93 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.07 Total: -34.51 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.66 5.15 -71.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.855 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds