Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38283 * 119.92228 * 2 1 4 4 C 1.38220 * 120.29030 * 180.37210 * 3 2 1 5 5 C 1.38755 * 119.96476 * 359.42922 * 4 3 2 6 6 C 1.39445 * 119.63700 * 0.16471 * 5 4 3 7 7 C 1.38295 * 119.92390 * 179.73467 * 2 1 3 8 8 N 1.40295 * 119.49178 * 180.23914 * 6 5 4 9 9 C 1.35133 * 118.60031 * 17.93679 * 8 6 5 10 10 O 1.21293 * 120.27211 * 180.85492 * 9 8 6 11 11 C 1.50683 * 119.45363 * 0.82929 * 9 8 6 12 12 N 1.39689 * 120.14618 * 179.97438 * 5 4 3 13 13 C 1.46898 * 110.99707 * 19.80551 * 12 5 4 14 14 C 1.50704 * 109.46521 * 175.73575 * 13 12 5 15 15 H 1.07994 * 120.00283 * 5.45705 * 14 13 12 16 16 C 1.37883 * 119.99778 * 185.46305 * 14 13 12 17 17 N 1.31519 * 119.99900 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99914 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47114 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46971 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.46980 * 239.99601 * 18 16 14 22 22 H 1.08998 * 109.46641 * 270.26563 * 1 2 3 23 23 H 1.08994 * 109.46851 * 30.26086 * 1 2 3 24 24 H 1.09000 * 109.47047 * 150.26597 * 1 2 3 25 25 H 1.08006 * 119.85987 * 0.08152 * 3 2 1 26 26 H 1.08005 * 120.02064 * 179.70916 * 4 3 2 27 27 H 1.07998 * 120.06044 * 359.95285 * 7 2 1 28 28 H 0.96998 * 120.70220 * 197.96033 * 8 6 5 29 29 H 1.09006 * 109.37131 * 85.28380 * 11 9 8 30 30 H 1.09003 * 109.37453 * 205.03998 * 11 9 8 31 31 H 1.08998 * 109.47493 * 295.73245 * 13 12 5 32 32 H 1.09000 * 109.47039 * 55.74378 * 13 12 5 33 33 H 0.96996 * 119.99856 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5790 1.2074 -0.0078 5 6 4.2798 0.0098 -0.0036 6 6 3.5820 -1.1974 0.0049 7 6 2.1970 -1.1986 0.0056 8 7 4.2936 -2.4065 0.0142 9 6 5.5943 -2.3887 0.3801 10 8 6.2425 -3.4139 0.3841 11 6 6.2330 -1.0846 0.7827 12 7 5.6767 0.0144 -0.0119 13 6 6.2015 1.3096 0.4406 14 6 7.7051 1.2427 0.5184 15 1 8.2249 0.3608 0.1745 16 6 8.4170 2.3076 1.0287 17 7 7.7840 3.3818 1.4471 18 14 10.2807 2.2250 1.1244 19 1 10.7463 0.9187 0.5935 20 1 10.8670 3.3252 0.3174 21 1 10.7104 2.3654 2.5389 22 1 -0.3632 0.0048 1.0277 23 1 -0.3633 0.8876 -0.5179 24 1 -0.3633 -0.8924 -0.5097 25 1 1.6533 2.1318 0.0013 26 1 4.1133 2.1460 -0.0125 27 1 1.6567 -2.1337 0.0107 28 1 3.8612 -3.2376 -0.2371 29 1 6.0413 -0.8993 1.8397 30 1 7.3086 -1.1418 0.6149 31 1 5.9084 2.0870 -0.2649 32 1 5.7968 1.5414 1.4258 33 1 8.2848 4.1310 1.8057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215278.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -5.464330 kcal Electronic energy + Delta-G solvation = -17523.833053 eV Core-core repulsion = 14742.083139 eV Total energy + Delta-G solvation = -2781.749914 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80243 -38.47346 -36.53107 -34.94925 -32.76314 -31.41987 -29.41418 -28.15659 -27.24492 -24.74236 -22.86839 -22.33311 -21.01672 -18.75006 -17.73428 -17.22526 -16.35359 -15.69174 -15.38084 -14.59767 -14.41065 -14.20187 -13.77711 -13.69132 -13.41803 -13.22545 -12.65226 -12.16318 -12.06020 -11.98357 -11.68911 -11.32835 -10.95681 -10.85858 -10.80883 -10.27153 -10.16244 -9.69647 -9.57777 -9.04926 -8.56810 -8.11931 -6.92854 -6.23590 -4.27997 1.51441 1.66518 2.79153 3.22404 3.30620 3.31400 3.35768 4.01308 4.26397 4.50830 4.72626 4.96756 5.10633 5.15089 5.36330 5.49203 5.66429 5.67920 5.77071 5.86863 5.97219 6.04817 6.24226 6.30658 6.50789 6.81876 6.91879 6.96298 7.10240 7.11691 7.32745 7.56713 7.62673 7.86134 8.21211 8.26892 8.77655 9.38584 10.86999 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.007102 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.905324 B = 3941.414152 C = 4989.615668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.133 4.133 5 C 0.101 3.899 6 C 0.105 3.895 7 C -0.127 4.127 8 N -0.664 5.664 9 C 0.524 3.476 10 O -0.533 6.533 11 C 0.053 3.947 12 N -0.483 5.483 13 C 0.192 3.808 14 C -0.531 4.531 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.406 0.594 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 -5.130 -1.356 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.128 4.128 4 C -0.154 4.154 5 C -0.002 4.002 6 C 0.008 3.992 7 C -0.148 4.148 8 N -0.310 5.310 9 C 0.312 3.688 10 O -0.408 6.408 11 C -0.076 4.076 12 N -0.197 5.197 13 C 0.070 3.930 14 C -0.569 4.569 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.728 3.272 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.243 0.757 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.529 -5.473 -1.675 12.872 hybrid contribution 0.572 -0.106 0.562 0.809 sum -10.958 -5.579 -1.112 12.346 Atomic orbital electron populations 1.20663 0.91429 1.02205 1.01788 1.19478 0.95535 0.92443 1.03506 1.20831 0.93624 0.97249 1.01143 1.21147 0.93989 0.97372 1.02925 1.19006 0.89625 0.92080 0.99487 1.17496 0.91215 0.84357 1.06172 1.20301 0.90914 0.98159 1.05471 1.43747 1.11545 1.08978 1.66721 1.21301 0.80877 0.91671 0.74932 1.90718 1.62202 1.35476 1.52437 1.22203 1.02585 0.85621 0.97188 1.58663 1.02115 1.07913 1.50964 1.20054 0.95689 0.82164 0.95078 1.21201 0.90518 1.02792 1.42415 0.91334 1.24958 0.99218 0.95065 0.94716 1.69944 1.35975 1.05567 1.41380 0.86387 0.84604 0.78410 0.77809 1.19421 1.20765 1.20837 0.91743 0.91819 0.92120 0.86124 0.84134 0.86102 0.75673 0.90669 0.85011 0.93727 0.96560 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.11 -1.40 5.88 -104.58 -0.62 -2.01 16 3 C -0.11 -1.56 9.68 -39.57 -0.38 -1.94 16 4 C -0.13 -2.30 8.96 -39.40 -0.35 -2.66 16 5 C 0.10 1.89 5.91 -83.64 -0.49 1.40 16 6 C 0.10 1.72 6.51 -83.43 -0.54 1.17 16 7 C -0.13 -1.72 9.60 -39.46 -0.38 -2.10 16 8 N -0.66 -10.58 5.49 -9.65 -0.05 -10.63 16 9 C 0.52 9.87 7.91 -10.83 -0.09 9.79 16 10 O -0.53 -11.16 17.96 5.55 0.10 -11.06 16 11 C 0.05 1.06 5.08 -5.15 -0.03 1.03 16 12 N -0.48 -10.24 4.77 -173.97 -0.83 -11.07 16 13 C 0.19 4.63 3.74 -4.97 -0.02 4.61 16 14 C -0.53 -13.92 8.39 -34.44 -0.29 -14.21 16 15 H 0.07 1.78 6.25 -52.49 -0.33 1.45 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 26 H 0.14 2.58 6.00 -52.48 -0.31 2.27 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.41 5.31 8.90 -40.82 -0.36 4.95 16 29 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 30 H 0.13 2.78 6.23 -51.93 -0.32 2.45 16 31 H 0.04 1.12 6.82 -51.93 -0.35 0.77 16 32 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -29.30 278.52 -7.56 -36.86 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.76 Total: 4.03 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.92 Total: -3.95 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.15 Total: -45.72 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.10 Total: -11.06 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.30 -7.56 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215278.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds